EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMOCG00000006060 (Gene tree)
Gene ID: 101985614
Gene Symbol: Pspc1
Alias: 5730470C09Rik|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Microtus_ochrogaster
Status: putative
Strand: Plus strand
Length: 64244 bases
Position: chr17:8648195-8712438
Accession: 101985614
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMOCP00000006412	RRM_1	PF00076.22	2.6e-32	1	2
ENSMOCP00000006412	RRM_1	PF00076.22	2.6e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMOCT00000007865	-	2454	XM_005355442	ENSMOCP00000006412	522 (aa)	XP_005355499	UPI00038BB512

Gene Model

Click here to download ENSMOCG00000006060's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000006060's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMOCG00000006060	Pspc1	91	55.372	ENSMOCG00000019075	Sfpq	77	63.780
ENSMOCG00000006060	Pspc1	91	59.494	ENSMOCG00000005532	-	85	66.494
ENSMOCG00000006060	Pspc1	78	55.769	ENSMOCG00000020099	-	83	57.256
ENSMOCG00000006060	Pspc1	91	47.468	ENSMOCG00000021293	-	87	48.478

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMOCG00000006060	Pspc1	100	97.323	ENSG00000121390	PSPC1	100	97.323	Homo_sapiens
ENSMOCG00000006060	Pspc1	90	69.610	ENSAPOG00000015946	pspc1	77	74.163	Acanthochromis_polyacanthus
ENSMOCG00000006060	Pspc1	100	96.941	ENSAMEG00000017420	PSPC1	100	96.941	Ailuropoda_melanoleuca
ENSMOCG00000006060	Pspc1	99	57.407	ENSACIG00000018695	pspc1	87	59.023	Amphilophus_citrinellus
ENSMOCG00000006060	Pspc1	90	68.583	ENSAOCG00000005279	pspc1	77	73.684	Amphiprion_ocellaris
ENSMOCG00000006060	Pspc1	90	69.665	ENSAPEG00000015927	pspc1	78	73.684	Amphiprion_percula
ENSMOCG00000006060	Pspc1	88	57.749	ENSATEG00000004878	pspc1	76	61.650	Anabas_testudineus
ENSMOCG00000006060	Pspc1	77	93.564	ENSAPLG00000006246	PSPC1	100	93.564	Anas_platyrhynchos
ENSMOCG00000006060	Pspc1	89	60.944	ENSAPLG00000003643	SFPQ	69	69.126	Anas_platyrhynchos
ENSMOCG00000006060	Pspc1	99	84.571	ENSACAG00000002093	PSPC1	99	84.762	Anolis_carolinensis
ENSMOCG00000006060	Pspc1	89	53.066	ENSACAG00000013307	-	56	65.027	Anolis_carolinensis
ENSMOCG00000006060	Pspc1	100	97.514	ENSANAG00000000059	PSPC1	100	97.514	Aotus_nancymaae
ENSMOCG00000006060	Pspc1	99	56.296	ENSACLG00000027220	pspc1	87	58.244	Astatotilapia_calliptera
ENSMOCG00000006060	Pspc1	99	63.370	ENSAMXG00000036881	pspc1	83	70.575	Astyanax_mexicanus
ENSMOCG00000006060	Pspc1	100	95.029	ENSBTAG00000003934	PSPC1	100	94.455	Bos_taurus
ENSMOCG00000006060	Pspc1	100	97.514	ENSCJAG00000004554	PSPC1	100	97.514	Callithrix_jacchus
ENSMOCG00000006060	Pspc1	100	97.132	ENSCAFG00020002009	PSPC1	100	97.132	Canis_lupus_dingo
ENSMOCG00000006060	Pspc1	100	95.029	ENSCHIG00000016708	PSPC1	100	94.455	Capra_hircus
ENSMOCG00000006060	Pspc1	80	87.678	ENSTSYG00000032882	PSPC1	93	85.036	Carlito_syrichta
ENSMOCG00000006060	Pspc1	100	95.220	ENSCPOG00000000395	PSPC1	100	94.646	Cavia_porcellus
ENSMOCG00000006060	Pspc1	100	97.514	ENSCCAG00000033498	PSPC1	100	97.514	Cebus_capucinus
ENSMOCG00000006060	Pspc1	100	97.132	ENSCATG00000036434	PSPC1	100	97.132	Cercocebus_atys
ENSMOCG00000006060	Pspc1	89	87.097	ENSCLAG00000005241	PSPC1	100	87.097	Chinchilla_lanigera
ENSMOCG00000006060	Pspc1	100	90.822	ENSCHOG00000008913	PSPC1	100	90.631	Choloepus_hoffmanni
ENSMOCG00000006060	Pspc1	99	86.857	ENSCPBG00000020859	PSPC1	99	87.066	Chrysemys_picta_bellii
ENSMOCG00000006060	Pspc1	62	56.575	ENSCSAVG00000003533	-	58	58.632	Ciona_savignyi
ENSMOCG00000006060	Pspc1	78	84.938	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSMOCG00000006060	Pspc1	100	98.659	ENSCGRG00001018368	Pspc1	100	98.659	Cricetulus_griseus_chok1gshd
ENSMOCG00000006060	Pspc1	100	98.659	ENSCGRG00000011724	Pspc1	100	98.659	Cricetulus_griseus_crigri
ENSMOCG00000006060	Pspc1	87	65.875	ENSCVAG00000007679	-	83	66.071	Cyprinodon_variegatus
ENSMOCG00000006060	Pspc1	99	65.985	ENSDARG00000006621	pspc1	100	67.391	Danio_rerio
ENSMOCG00000006060	Pspc1	100	95.985	ENSDNOG00000011078	PSPC1	100	96.176	Dasypus_novemcinctus
ENSMOCG00000006060	Pspc1	100	94.264	ENSDORG00000016050	Pspc1	100	94.264	Dipodomys_ordii
ENSMOCG00000006060	Pspc1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSMOCG00000006060	Pspc1	57	46.462	ENSEBUG00000010133	pspc1	77	48.980	Eptatretus_burgeri
ENSMOCG00000006060	Pspc1	88	59.091	ENSEBUG00000003964	-	62	72.254	Eptatretus_burgeri
ENSMOCG00000006060	Pspc1	100	96.935	ENSEASG00005000119	PSPC1	100	96.935	Equus_asinus_asinus
ENSMOCG00000006060	Pspc1	100	96.935	ENSECAG00000017286	PSPC1	100	96.935	Equus_caballus
ENSMOCG00000006060	Pspc1	73	96.721	ENSEEUG00000011288	-	100	65.392	Erinaceus_europaeus
ENSMOCG00000006060	Pspc1	99	65.498	ENSELUG00000003746	pspc1	94	72.194	Esox_lucius
ENSMOCG00000006060	Pspc1	100	97.132	ENSFCAG00000027841	PSPC1	100	97.132	Felis_catus
ENSMOCG00000006060	Pspc1	99	87.954	ENSFALG00000008750	PSPC1	99	87.954	Ficedula_albicollis
ENSMOCG00000006060	Pspc1	100	93.678	ENSFDAG00000002617	PSPC1	100	93.678	Fukomys_damarensis
ENSMOCG00000006060	Pspc1	89	66.453	ENSGMOG00000015074	pspc1	86	65.591	Gadus_morhua
ENSMOCG00000006060	Pspc1	99	87.287	ENSGALG00000017142	PSPC1	99	87.908	Gallus_gallus
ENSMOCG00000006060	Pspc1	66	74.785	ENSGAFG00000006327	pspc1	72	74.785	Gambusia_affinis
ENSMOCG00000006060	Pspc1	88	65.302	ENSGACG00000014901	pspc1	92	73.394	Gasterosteus_aculeatus
ENSMOCG00000006060	Pspc1	99	85.795	ENSGAGG00000019164	PSPC1	99	87.066	Gopherus_agassizii
ENSMOCG00000006060	Pspc1	92	59.336	ENSGAGG00000017325	-	58	66.754	Gopherus_agassizii
ENSMOCG00000006060	Pspc1	100	97.132	ENSGGOG00000003414	PSPC1	100	97.132	Gorilla_gorilla
ENSMOCG00000006060	Pspc1	99	64.662	ENSHBUG00000001139	pspc1	100	63.031	Haplochromis_burtoni
ENSMOCG00000006060	Pspc1	100	95.802	ENSHGLG00000018811	PSPC1	100	94.847	Heterocephalus_glaber_female
ENSMOCG00000006060	Pspc1	67	92.264	ENSHGLG00100007962	PSPC1	100	92.264	Heterocephalus_glaber_male
ENSMOCG00000006060	Pspc1	75	67.402	ENSHCOG00000013251	pspc1	93	64.762	Hippocampus_comes
ENSMOCG00000006060	Pspc1	91	73.140	ENSIPUG00000013192	pspc1	91	72.727	Ictalurus_punctatus
ENSMOCG00000006060	Pspc1	100	97.323	ENSSTOG00000026833	PSPC1	100	97.323	Ictidomys_tridecemlineatus
ENSMOCG00000006060	Pspc1	100	97.510	ENSJJAG00000018334	Pspc1	100	97.510	Jaculus_jaculus
ENSMOCG00000006060	Pspc1	88	55.292	ENSKMAG00000013525	-	84	52.688	Kryptolebias_marmoratus
ENSMOCG00000006060	Pspc1	90	65.854	ENSLBEG00000004474	pspc1	72	75.510	Labrus_bergylta
ENSMOCG00000006060	Pspc1	99	75.651	ENSLACG00000010762	PSPC1	99	76.779	Latimeria_chalumnae
ENSMOCG00000006060	Pspc1	89	84.017	ENSLOCG00000010832	pspc1	99	77.735	Lepisosteus_oculatus
ENSMOCG00000006060	Pspc1	100	95.977	ENSLAFG00000010968	PSPC1	100	95.977	Loxodonta_africana
ENSMOCG00000006060	Pspc1	100	97.514	ENSMFAG00000032728	PSPC1	100	97.514	Macaca_fascicularis
ENSMOCG00000006060	Pspc1	100	97.514	ENSMMUG00000020262	PSPC1	100	97.514	Macaca_mulatta
ENSMOCG00000006060	Pspc1	100	97.514	ENSMNEG00000027401	PSPC1	100	97.514	Macaca_nemestrina
ENSMOCG00000006060	Pspc1	100	98.747	ENSMLEG00000039043	PSPC1	100	98.747	Mandrillus_leucophaeus
ENSMOCG00000006060	Pspc1	88	67.010	ENSMAMG00000004333	pspc1	87	61.834	Mastacembelus_armatus
ENSMOCG00000006060	Pspc1	99	56.296	ENSMZEG00005005726	pspc1	87	58.244	Maylandia_zebra
ENSMOCG00000006060	Pspc1	78	93.350	ENSMGAG00000015134	PSPC1	100	93.350	Meleagris_gallopavo
ENSMOCG00000006060	Pspc1	88	93.059	ENSMAUG00000021067	Pspc1	99	93.059	Mesocricetus_auratus
ENSMOCG00000006060	Pspc1	100	97.126	ENSMICG00000013970	PSPC1	100	97.126	Microcebus_murinus
ENSMOCG00000006060	Pspc1	90	44.356	ENSMMOG00000004352	pspc1	59	52.083	Mola_mola
ENSMOCG00000006060	Pspc1	93	95.464	ENSMODG00000008029	PSPC1	78	95.464	Monodelphis_domestica
ENSMOCG00000006060	Pspc1	88	69.099	ENSMALG00000008914	pspc1	88	67.382	Monopterus_albus
ENSMOCG00000006060	Pspc1	100	99.235	MGP_CAROLIEiJ_G0019341	Pspc1	100	99.235	Mus_caroli
ENSMOCG00000006060	Pspc1	100	99.426	ENSMUSG00000021938	Pspc1	100	99.426	Mus_musculus
ENSMOCG00000006060	Pspc1	100	99.235	MGP_PahariEiJ_G0030359	Pspc1	100	99.235	Mus_pahari
ENSMOCG00000006060	Pspc1	100	99.235	MGP_SPRETEiJ_G0020232	Pspc1	100	99.235	Mus_spretus
ENSMOCG00000006060	Pspc1	100	96.947	ENSMPUG00000013347	PSPC1	100	96.947	Mustela_putorius_furo
ENSMOCG00000006060	Pspc1	100	95.057	ENSMLUG00000017663	PSPC1	100	94.867	Myotis_lucifugus
ENSMOCG00000006060	Pspc1	100	97.510	ENSNGAG00000011271	Pspc1	100	97.510	Nannospalax_galili
ENSMOCG00000006060	Pspc1	74	64.885	ENSNBRG00000014059	pspc1	92	60.345	Neolamprologus_brichardi
ENSMOCG00000006060	Pspc1	100	97.323	ENSNLEG00000001294	PSPC1	100	97.323	Nomascus_leucogenys
ENSMOCG00000006060	Pspc1	84	95.312	ENSMEUG00000000476	PSPC1	84	95.312	Notamacropus_eugenii
ENSMOCG00000006060	Pspc1	100	84.321	ENSODEG00000007817	-	100	80.907	Octodon_degus
ENSMOCG00000006060	Pspc1	100	83.588	ENSODEG00000019012	-	100	84.688	Octodon_degus
ENSMOCG00000006060	Pspc1	99	64.728	ENSONIG00000012010	pspc1	99	62.523	Oreochromis_niloticus
ENSMOCG00000006060	Pspc1	76	96.992	ENSOANG00000009017	-	100	96.992	Ornithorhynchus_anatinus
ENSMOCG00000006060	Pspc1	99	65.966	ENSOANG00000011381	-	99	63.862	Ornithorhynchus_anatinus
ENSMOCG00000006060	Pspc1	100	97.132	ENSOCUG00000006153	PSPC1	100	97.132	Oryctolagus_cuniculus
ENSMOCG00000006060	Pspc1	88	69.787	ENSORLG00000004232	-	87	63.975	Oryzias_latipes
ENSMOCG00000006060	Pspc1	88	69.149	ENSORLG00020000578	PSPC1	90	63.434	Oryzias_latipes_hni
ENSMOCG00000006060	Pspc1	88	70.000	ENSORLG00015017480	pspc1	77	71.359	Oryzias_latipes_hsok
ENSMOCG00000006060	Pspc1	100	97.897	ENSOGAG00000012643	PSPC1	100	97.897	Otolemur_garnettii
ENSMOCG00000006060	Pspc1	100	90.840	ENSOARG00000014163	PSPC1	100	90.840	Ovis_aries
ENSMOCG00000006060	Pspc1	89	91.828	ENSPPAG00000009836	PSPC1	93	99.390	Pan_paniscus
ENSMOCG00000006060	Pspc1	100	97.132	ENSPPRG00000008833	PSPC1	100	97.132	Panthera_pardus
ENSMOCG00000006060	Pspc1	100	82.375	ENSPTIG00000016917	PSPC1	100	82.375	Panthera_tigris_altaica
ENSMOCG00000006060	Pspc1	98	95.720	ENSPTRG00000005677	PSPC1	99	97.119	Pan_troglodytes
ENSMOCG00000006060	Pspc1	100	97.323	ENSPANG00000001992	PSPC1	100	97.323	Papio_anubis
ENSMOCG00000006060	Pspc1	82	78.322	ENSPKIG00000003578	pspc1	81	77.650	Paramormyrops_kingsleyae
ENSMOCG00000006060	Pspc1	99	86.629	ENSPSIG00000005168	PSPC1	99	86.038	Pelodiscus_sinensis
ENSMOCG00000006060	Pspc1	59	71.154	ENSPMGG00000015135	pspc1	86	69.968	Periophthalmus_magnuspinnatus
ENSMOCG00000006060	Pspc1	100	99.234	ENSPEMG00000015214	Pspc1	100	99.234	Peromyscus_maniculatus_bairdii
ENSMOCG00000006060	Pspc1	99	95.977	ENSPCIG00000017680	PSPC1	100	95.977	Phascolarctos_cinereus
ENSMOCG00000006060	Pspc1	92	67.206	ENSPFOG00000003362	pspc1	93	65.314	Poecilia_formosa
ENSMOCG00000006060	Pspc1	70	64.499	ENSPLAG00000004407	-	53	60.105	Poecilia_latipinna
ENSMOCG00000006060	Pspc1	92	66.802	ENSPLAG00000011540	pspc1	92	65.720	Poecilia_latipinna
ENSMOCG00000006060	Pspc1	68	65.546	ENSPMEG00000001025	-	51	60.976	Poecilia_mexicana
ENSMOCG00000006060	Pspc1	92	66.397	ENSPMEG00000008322	pspc1	92	65.314	Poecilia_mexicana
ENSMOCG00000006060	Pspc1	92	66.802	ENSPREG00000007786	pspc1	92	65.314	Poecilia_reticulata
ENSMOCG00000006060	Pspc1	100	97.126	ENSPPYG00000005186	PSPC1	100	97.126	Pongo_abelii
ENSMOCG00000006060	Pspc1	66	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSMOCG00000006060	Pspc1	100	93.499	ENSPCOG00000014364	PSPC1	100	93.499	Propithecus_coquereli
ENSMOCG00000006060	Pspc1	100	92.720	ENSPVAG00000005036	PSPC1	100	93.295	Pteropus_vampyrus
ENSMOCG00000006060	Pspc1	99	57.411	ENSPNYG00000008893	pspc1	100	53.761	Pundamilia_nyererei
ENSMOCG00000006060	Pspc1	99	67.351	ENSPNAG00000016511	pspc1	100	66.790	Pygocentrus_nattereri
ENSMOCG00000006060	Pspc1	100	99.042	ENSRNOG00000020782	Pspc1	100	99.042	Rattus_norvegicus
ENSMOCG00000006060	Pspc1	93	97.131	ENSRBIG00000036057	PSPC1	100	97.131	Rhinopithecus_bieti
ENSMOCG00000006060	Pspc1	100	97.137	ENSRROG00000036334	PSPC1	100	97.137	Rhinopithecus_roxellana
ENSMOCG00000006060	Pspc1	79	87.893	ENSSBOG00000028172	PSPC1	90	95.290	Saimiri_boliviensis_boliviensis
ENSMOCG00000006060	Pspc1	100	90.667	ENSSHAG00000004696	PSPC1	100	90.667	Sarcophilus_harrisii
ENSMOCG00000006060	Pspc1	81	79.529	ENSSFOG00015001395	pspc1	89	78.738	Scleropages_formosus
ENSMOCG00000006060	Pspc1	88	66.527	ENSSMAG00000001761	pspc1	85	74.928	Scophthalmus_maximus
ENSMOCG00000006060	Pspc1	88	68.560	ENSSDUG00000010651	pspc1	80	71.333	Seriola_dumerili
ENSMOCG00000006060	Pspc1	88	64.069	ENSSLDG00000004284	pspc1	86	59.649	Seriola_lalandi_dorsalis
ENSMOCG00000006060	Pspc1	100	89.080	ENSSARG00000000888	PSPC1	100	89.655	Sorex_araneus
ENSMOCG00000006060	Pspc1	90	53.571	ENSSPUG00000001136	-	53	61.453	Sphenodon_punctatus
ENSMOCG00000006060	Pspc1	99	74.480	ENSSPUG00000008550	PSPC1	99	75.240	Sphenodon_punctatus
ENSMOCG00000006060	Pspc1	90	67.879	ENSSPAG00000001921	pspc1	86	67.715	Stegastes_partitus
ENSMOCG00000006060	Pspc1	100	95.594	ENSSSCG00000009569	PSPC1	100	95.038	Sus_scrofa
ENSMOCG00000006060	Pspc1	89	94.433	ENSTGUG00000011295	PSPC1	100	94.433	Taeniopygia_guttata
ENSMOCG00000006060	Pspc1	88	63.270	ENSTRUG00000011335	pspc1	77	66.180	Takifugu_rubripes
ENSMOCG00000006060	Pspc1	88	64.807	ENSTNIG00000010358	pspc1	84	66.271	Tetraodon_nigroviridis
ENSMOCG00000006060	Pspc1	100	75.717	ENSTBEG00000002361	PSPC1	100	75.908	Tupaia_belangeri
ENSMOCG00000006060	Pspc1	100	95.977	ENSTTRG00000003343	PSPC1	100	95.977	Tursiops_truncatus
ENSMOCG00000006060	Pspc1	67	97.159	ENSUAMG00000012309	PSPC1	100	97.159	Ursus_americanus
ENSMOCG00000006060	Pspc1	93	96.920	ENSUMAG00000013993	PSPC1	100	96.920	Ursus_maritimus
ENSMOCG00000006060	Pspc1	76	98.246	ENSVPAG00000010029	PSPC1	100	98.246	Vicugna_pacos
ENSMOCG00000006060	Pspc1	100	97.132	ENSVVUG00000006414	PSPC1	100	97.409	Vulpes_vulpes
ENSMOCG00000006060	Pspc1	66	73.926	ENSXCOG00000017438	pspc1	83	73.926	Xiphophorus_couchianus
ENSMOCG00000006060	Pspc1	66	74.212	ENSXMAG00000007929	pspc1	83	74.212	Xiphophorus_maculatus