EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMOCG00000007551 (Gene tree)
Gene ID: 101991041
Gene Symbol: Pabpc4l
Alias: C330050A14Rik|EG241989
Full Name: poly(A) binding protein cytoplasmic 4 like
Gene Type: protein_coding
Species: Microtus_ochrogaster
Status: putative
Strand: Minus strand
Length: 1113 bases
Position: chr1:97657421-97658533
Accession: 101991041
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMOCP00000007699	RRM_5	PF13893.6	2.1e-11	1	3
ENSMOCP00000007699	RRM_5	PF13893.6	2.1e-11	2	3
ENSMOCP00000007699	RRM_5	PF13893.6	2.1e-11	3	3
ENSMOCP00000007699	RRM_1	PF00076.22	1.5e-83	1	4
ENSMOCP00000007699	RRM_1	PF00076.22	1.5e-83	2	4
ENSMOCP00000007699	RRM_1	PF00076.22	1.5e-83	3	4
ENSMOCP00000007699	RRM_1	PF00076.22	1.5e-83	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMOCT00000009747	-	1113	XM_005343944	ENSMOCP00000007699	370 (aa)	XP_005344001	UPI00038C615C

Gene Model

Click here to download ENSMOCG00000007551's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000007551's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMOCG00000007551	Pabpc4l	96	37.705	ENSMOCG00000013658	-	55	37.705
ENSMOCG00000007551	Pabpc4l	53	38.095	ENSMOCG00000011167	-	64	38.710
ENSMOCG00000007551	Pabpc4l	96	33.735	ENSMOCG00000016960	Elavl2	86	33.735
ENSMOCG00000007551	Pabpc4l	97	64.167	ENSMOCG00000001354	Pabpc2	63	64.167
ENSMOCG00000007551	Pabpc4l	66	31.250	ENSMOCG00000011189	Trnau1ap	54	30.882
ENSMOCG00000007551	Pabpc4l	82	38.158	ENSMOCG00000001511	Rbm3	58	38.158
ENSMOCG00000007551	Pabpc4l	97	59.444	ENSMOCG00000013186	Pabpc1l	61	59.444
ENSMOCG00000007551	Pabpc4l	98	30.519	ENSMOCG00000010309	Elavl4	82	30.723
ENSMOCG00000007551	Pabpc4l	98	67.218	ENSMOCG00000004921	-	59	67.218
ENSMOCG00000007551	Pabpc4l	73	36.364	ENSMOCG00000001878	Celf3	51	36.508
ENSMOCG00000007551	Pabpc4l	99	70.137	ENSMOCG00000006763	Pabpc4	62	69.565
ENSMOCG00000007551	Pabpc4l	97	60.784	ENSMOCG00000001554	Pabpc5	95	60.165
ENSMOCG00000007551	Pabpc4l	97	69.841	ENSMOCG00000018191	-	61	70.638

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMOCG00000007551	Pabpc4l	100	84.324	ENSG00000254535	PABPC4L	100	84.324	Homo_sapiens
ENSMOCG00000007551	Pabpc4l	100	83.514	ENSANAG00000017199	PABPC4L	87	83.514	Aotus_nancymaae
ENSMOCG00000007551	Pabpc4l	99	82.385	ENSBTAG00000046902	PABPC4L	99	82.385	Bos_taurus
ENSMOCG00000007551	Pabpc4l	100	84.054	ENSCJAG00000045332	PABPC4L	86	84.054	Callithrix_jacchus
ENSMOCG00000007551	Pabpc4l	99	70.380	ENSCAFG00020019182	-	54	70.380	Canis_lupus_dingo
ENSMOCG00000007551	Pabpc4l	99	82.385	ENSCHIG00000007231	PABPC4L	99	82.385	Capra_hircus
ENSMOCG00000007551	Pabpc4l	98	76.418	ENSCAPG00000000555	PABPC4L	100	76.418	Cavia_aperea
ENSMOCG00000007551	Pabpc4l	100	73.243	ENSCPOG00000033167	PABPC4L	100	73.243	Cavia_porcellus
ENSMOCG00000007551	Pabpc4l	100	83.784	ENSCCAG00000031681	PABPC4L	86	83.784	Cebus_capucinus
ENSMOCG00000007551	Pabpc4l	100	77.838	ENSCLAG00000017628	PABPC4L	100	77.838	Chinchilla_lanigera
ENSMOCG00000007551	Pabpc4l	100	82.162	ENSCANG00000037677	PABPC4L	100	82.162	Colobus_angolensis_palliatus
ENSMOCG00000007551	Pabpc4l	100	94.865	ENSCGRG00001002070	Pabpc4l	100	94.865	Cricetulus_griseus_chok1gshd
ENSMOCG00000007551	Pabpc4l	100	94.865	ENSCGRG00000020086	Pabpc4l	100	94.865	Cricetulus_griseus_crigri
ENSMOCG00000007551	Pabpc4l	100	82.432	ENSDNOG00000031077	PABPC4L	95	82.432	Dasypus_novemcinctus
ENSMOCG00000007551	Pabpc4l	99	81.030	ENSEASG00005007883	PABPC4L	99	81.030	Equus_asinus_asinus
ENSMOCG00000007551	Pabpc4l	99	81.301	ENSECAG00000031416	PABPC4L	99	81.301	Equus_caballus
ENSMOCG00000007551	Pabpc4l	99	81.843	ENSFCAG00000028270	PABPC4L	99	81.843	Felis_catus
ENSMOCG00000007551	Pabpc4l	99	76.423	ENSFDAG00000019606	PABPC4L	99	76.423	Fukomys_damarensis
ENSMOCG00000007551	Pabpc4l	100	83.784	ENSGGOG00000024991	PABPC4L	100	83.784	Gorilla_gorilla
ENSMOCG00000007551	Pabpc4l	99	77.778	ENSHGLG00000020104	PABPC4L	99	77.778	Heterocephalus_glaber_female
ENSMOCG00000007551	Pabpc4l	99	77.778	ENSHGLG00100020648	PABPC4L	99	77.778	Heterocephalus_glaber_male
ENSMOCG00000007551	Pabpc4l	100	83.827	ENSSTOG00000019472	PABPC4L	99	83.827	Ictidomys_tridecemlineatus
ENSMOCG00000007551	Pabpc4l	99	81.843	ENSJJAG00000004090	Pabpc4l	99	81.843	Jaculus_jaculus
ENSMOCG00000007551	Pabpc4l	100	95.676	ENSMAUG00000016313	Pabpc4l	100	95.676	Mesocricetus_auratus
ENSMOCG00000007551	Pabpc4l	100	83.243	ENSMICG00000029683	PABPC4L	100	83.243	Microcebus_murinus
ENSMOCG00000007551	Pabpc4l	100	89.189	MGP_CAROLIEiJ_G0024968	Pabpc4l	100	90.000	Mus_caroli
ENSMOCG00000007551	Pabpc4l	100	89.459	ENSMUSG00000090919	Pabpc4l	100	90.000	Mus_musculus
ENSMOCG00000007551	Pabpc4l	100	89.730	MGP_PahariEiJ_G0026409	Pabpc4l	100	89.730	Mus_pahari
ENSMOCG00000007551	Pabpc4l	100	88.919	MGP_SPRETEiJ_G0025903	Pabpc4l	100	90.000	Mus_spretus
ENSMOCG00000007551	Pabpc4l	99	74.797	ENSMLUG00000008254	PABPC4L	99	74.797	Myotis_lucifugus
ENSMOCG00000007551	Pabpc4l	100	89.189	ENSNGAG00000001502	Pabpc4l	100	89.189	Nannospalax_galili
ENSMOCG00000007551	Pabpc4l	100	84.054	ENSNLEG00000019300	PABPC4L	100	84.054	Nomascus_leucogenys
ENSMOCG00000007551	Pabpc4l	100	76.486	ENSOGAG00000026166	PABPC4L	100	76.486	Otolemur_garnettii
ENSMOCG00000007551	Pabpc4l	99	84.520	ENSPPAG00000043745	PABPC4L	93	84.520	Pan_paniscus
ENSMOCG00000007551	Pabpc4l	99	81.301	ENSPPRG00000018628	PABPC4L	99	81.301	Panthera_pardus
ENSMOCG00000007551	Pabpc4l	99	81.843	ENSPTIG00000010106	PABPC4L	99	81.843	Panthera_tigris_altaica
ENSMOCG00000007551	Pabpc4l	99	84.520	ENSPTRG00000045513	-	80	84.520	Pan_troglodytes
ENSMOCG00000007551	Pabpc4l	100	94.865	ENSPEMG00000012565	Pabpc4l	100	94.865	Peromyscus_maniculatus_bairdii
ENSMOCG00000007551	Pabpc4l	100	83.784	ENSPCOG00000025578	PABPC4L	100	83.784	Propithecus_coquereli
ENSMOCG00000007551	Pabpc4l	100	90.541	ENSRNOG00000029749	Pabpc4l	100	90.541	Rattus_norvegicus
ENSMOCG00000007551	Pabpc4l	100	81.081	ENSRBIG00000030229	PABPC4L	100	81.081	Rhinopithecus_bieti
ENSMOCG00000007551	Pabpc4l	100	80.811	ENSRROG00000020367	PABPC4L	100	80.811	Rhinopithecus_roxellana
ENSMOCG00000007551	Pabpc4l	100	83.243	ENSSBOG00000016382	PABPC4L	100	83.243	Saimiri_boliviensis_boliviensis
ENSMOCG00000007551	Pabpc4l	99	75.610	ENSSSCG00000009067	PABPC4L	99	75.610	Sus_scrofa
ENSMOCG00000007551	Pabpc4l	99	81.030	ENSUAMG00000001289	PABPC4L	99	81.030	Ursus_americanus
ENSMOCG00000007551	Pabpc4l	99	81.030	ENSUMAG00000014887	PABPC4L	99	81.030	Ursus_maritimus
ENSMOCG00000007551	Pabpc4l	89	71.341	ENSVVUG00000011060	-	75	71.341	Vulpes_vulpes