EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMOCG00000008665 (Gene tree)
Gene ID: -
Gene Symbol: Xrn1
Alias: Dhm2|mXrn1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Microtus_ochrogaster
Status: putative
Strand: Plus strand
Length: 56066 bases
Position: chrJH996442.1:5942282-5998347
Accession: 891964
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMOCP00000008652	XRN_N	PF03159.18	1.3e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMOCT00000011164	-	2904	-	ENSMOCP00000008652	967 (aa)	-	-

Gene Model

Click here to download ENSMOCG00000008665's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000008665's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMOCG00000008665	Xrn1	61	38.913	ENSMOCG00000012588	Xrn2	71	39.443

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMOCG00000008665	Xrn1	99	94.612	ENSG00000114127	XRN1	100	97.576	Homo_sapiens
ENSMOCG00000008665	Xrn1	99	78.413	ENSAPOG00000000622	xrn1	93	77.186	Acanthochromis_polyacanthus
ENSMOCG00000008665	Xrn1	99	94.295	ENSAMEG00000012538	XRN1	56	94.295	Ailuropoda_melanoleuca
ENSMOCG00000008665	Xrn1	99	78.130	ENSACIG00000001057	xrn1	60	78.288	Amphilophus_citrinellus
ENSMOCG00000008665	Xrn1	99	78.537	ENSAOCG00000014097	xrn1	95	69.277	Amphiprion_ocellaris
ENSMOCG00000008665	Xrn1	99	78.537	ENSAPEG00000006620	xrn1	62	77.583	Amphiprion_percula
ENSMOCG00000008665	Xrn1	99	76.190	ENSATEG00000009752	xrn1	61	76.424	Anabas_testudineus
ENSMOCG00000008665	Xrn1	97	88.411	ENSAPLG00000004905	XRN1	56	88.411	Anas_platyrhynchos
ENSMOCG00000008665	Xrn1	99	85.556	ENSACAG00000004985	XRN1	54	84.494	Anolis_carolinensis
ENSMOCG00000008665	Xrn1	99	95.231	ENSANAG00000029013	XRN1	86	95.231	Aotus_nancymaae
ENSMOCG00000008665	Xrn1	99	77.338	ENSACLG00000004806	xrn1	57	77.690	Astatotilapia_calliptera
ENSMOCG00000008665	Xrn1	99	73.651	ENSAMXG00000019370	xrn1	95	94.175	Astyanax_mexicanus
ENSMOCG00000008665	Xrn1	99	93.819	ENSBTAG00000011524	XRN1	57	93.819	Bos_taurus
ENSMOCG00000008665	Xrn1	93	52.632	WBGene00012730	xrn-1	62	50.896	Caenorhabditis_elegans
ENSMOCG00000008665	Xrn1	99	94.770	ENSCJAG00000001872	XRN1	60	94.770	Callithrix_jacchus
ENSMOCG00000008665	Xrn1	99	94.770	ENSCAFG00000007783	XRN1	56	94.770	Canis_familiaris
ENSMOCG00000008665	Xrn1	99	94.770	ENSCAFG00020009120	XRN1	99	92.539	Canis_lupus_dingo
ENSMOCG00000008665	Xrn1	99	94.136	ENSCHIG00000019192	XRN1	56	94.136	Capra_hircus
ENSMOCG00000008665	Xrn1	99	94.612	ENSTSYG00000002705	XRN1	58	94.612	Carlito_syrichta
ENSMOCG00000008665	Xrn1	97	71.958	ENSCAPG00000004604	-	100	71.958	Cavia_aperea
ENSMOCG00000008665	Xrn1	100	94.634	ENSCCAG00000034800	XRN1	100	94.634	Cebus_capucinus
ENSMOCG00000008665	Xrn1	99	95.246	ENSCATG00000041794	XRN1	58	95.246	Cercocebus_atys
ENSMOCG00000008665	Xrn1	100	93.705	ENSCLAG00000001451	XRN1	100	93.705	Chinchilla_lanigera
ENSMOCG00000008665	Xrn1	99	95.404	ENSCSAG00000011265	XRN1	58	95.404	Chlorocebus_sabaeus
ENSMOCG00000008665	Xrn1	83	61.026	ENSCSAVG00000008584	-	62	61.026	Ciona_savignyi
ENSMOCG00000008665	Xrn1	100	94.634	ENSCANG00000037495	XRN1	100	94.634	Colobus_angolensis_palliatus
ENSMOCG00000008665	Xrn1	100	96.904	ENSCGRG00001019411	Xrn1	100	96.904	Cricetulus_griseus_chok1gshd
ENSMOCG00000008665	Xrn1	100	96.904	ENSCGRG00000012464	Xrn1	100	96.904	Cricetulus_griseus_crigri
ENSMOCG00000008665	Xrn1	99	77.937	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSMOCG00000008665	Xrn1	99	71.065	ENSCVAG00000013089	xrn1	85	76.312	Cyprinodon_variegatus
ENSMOCG00000008665	Xrn1	99	79.239	ENSDARG00000091652	xrn1	98	79.958	Danio_rerio
ENSMOCG00000008665	Xrn1	99	94.118	ENSDORG00000013833	Xrn1	57	94.118	Dipodomys_ordii
ENSMOCG00000008665	Xrn1	94	55.294	FBgn0020261	pcm	54	55.294	Drosophila_melanogaster
ENSMOCG00000008665	Xrn1	100	94.324	ENSEASG00005002687	XRN1	100	94.324	Equus_asinus_asinus
ENSMOCG00000008665	Xrn1	99	94.770	ENSECAG00000008301	XRN1	57	94.770	Equus_caballus
ENSMOCG00000008665	Xrn1	99	78.323	ENSELUG00000000169	xrn1	56	78.481	Esox_lucius
ENSMOCG00000008665	Xrn1	99	91.124	ENSFCAG00000027589	XRN1	99	93.187	Felis_catus
ENSMOCG00000008665	Xrn1	99	87.758	ENSFALG00000007021	XRN1	55	88.076	Ficedula_albicollis
ENSMOCG00000008665	Xrn1	100	93.602	ENSFDAG00000020494	XRN1	100	93.602	Fukomys_damarensis
ENSMOCG00000008665	Xrn1	50	70.062	ENSFHEG00000017356	-	98	69.231	Fundulus_heteroclitus
ENSMOCG00000008665	Xrn1	99	75.040	ENSGMOG00000006396	xrn1	57	75.994	Gadus_morhua
ENSMOCG00000008665	Xrn1	99	88.076	ENSGALG00000002706	XRN1	55	88.076	Gallus_gallus
ENSMOCG00000008665	Xrn1	99	76.424	ENSGACG00000014328	xrn1	56	76.424	Gasterosteus_aculeatus
ENSMOCG00000008665	Xrn1	99	86.667	ENSGAGG00000017535	XRN1	58	86.667	Gopherus_agassizii
ENSMOCG00000008665	Xrn1	99	94.770	ENSGGOG00000008047	XRN1	58	94.770	Gorilla_gorilla
ENSMOCG00000008665	Xrn1	99	75.436	ENSHBUG00000005908	xrn1	98	73.101	Haplochromis_burtoni
ENSMOCG00000008665	Xrn1	99	94.295	ENSHGLG00000014476	XRN1	99	94.099	Heterocephalus_glaber_female
ENSMOCG00000008665	Xrn1	99	94.295	ENSHGLG00100015130	XRN1	99	94.099	Heterocephalus_glaber_male
ENSMOCG00000008665	Xrn1	99	76.462	ENSHCOG00000014062	xrn1	62	76.462	Hippocampus_comes
ENSMOCG00000008665	Xrn1	99	79.048	ENSIPUG00000015229	xrn1	58	79.048	Ictalurus_punctatus
ENSMOCG00000008665	Xrn1	99	95.109	ENSSTOG00000013552	XRN1	99	95.109	Ictidomys_tridecemlineatus
ENSMOCG00000008665	Xrn1	97	94.380	ENSJJAG00000010863	Xrn1	100	94.174	Jaculus_jaculus
ENSMOCG00000008665	Xrn1	99	78.275	ENSKMAG00000021356	xrn1	94	75.949	Kryptolebias_marmoratus
ENSMOCG00000008665	Xrn1	99	77.107	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSMOCG00000008665	Xrn1	99	83.968	ENSLACG00000009020	XRN1	56	83.968	Latimeria_chalumnae
ENSMOCG00000008665	Xrn1	99	81.359	ENSLOCG00000007944	xrn1	57	81.359	Lepisosteus_oculatus
ENSMOCG00000008665	Xrn1	99	94.118	ENSLAFG00000015426	XRN1	92	94.118	Loxodonta_africana
ENSMOCG00000008665	Xrn1	99	95.404	ENSMFAG00000032599	XRN1	58	95.404	Macaca_fascicularis
ENSMOCG00000008665	Xrn1	99	95.246	ENSMMUG00000014038	XRN1	58	95.246	Macaca_mulatta
ENSMOCG00000008665	Xrn1	99	94.929	ENSMNEG00000034217	XRN1	58	94.929	Macaca_nemestrina
ENSMOCG00000008665	Xrn1	99	78.605	ENSMAMG00000013219	xrn1	94	76.122	Mastacembelus_armatus
ENSMOCG00000008665	Xrn1	99	77.021	ENSMZEG00005015099	xrn1	57	77.373	Maylandia_zebra
ENSMOCG00000008665	Xrn1	97	83.993	ENSMGAG00000006333	XRN1	56	83.993	Meleagris_gallopavo
ENSMOCG00000008665	Xrn1	99	94.295	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSMOCG00000008665	Xrn1	54	68.081	ENSMMOG00000020896	-	96	67.712	Mola_mola
ENSMOCG00000008665	Xrn1	99	88.535	ENSMODG00000021236	XRN1	57	88.535	Monodelphis_domestica
ENSMOCG00000008665	Xrn1	99	70.635	ENSMALG00000004098	xrn1	57	70.159	Monopterus_albus
ENSMOCG00000008665	Xrn1	99	96.677	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSMOCG00000008665	Xrn1	99	96.989	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSMOCG00000008665	Xrn1	99	96.355	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSMOCG00000008665	Xrn1	99	96.989	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSMOCG00000008665	Xrn1	99	94.770	ENSMPUG00000012040	XRN1	57	94.770	Mustela_putorius_furo
ENSMOCG00000008665	Xrn1	98	94.277	ENSMLUG00000016885	XRN1	55	94.277	Myotis_lucifugus
ENSMOCG00000008665	Xrn1	99	91.693	ENSNGAG00000023964	Xrn1	99	91.693	Nannospalax_galili
ENSMOCG00000008665	Xrn1	99	95.404	ENSNLEG00000004726	XRN1	58	95.404	Nomascus_leucogenys
ENSMOCG00000008665	Xrn1	99	78.095	ENSONIG00000016673	xrn1	64	78.323	Oreochromis_niloticus
ENSMOCG00000008665	Xrn1	85	86.290	ENSOANG00000006735	XRN1	53	86.290	Ornithorhynchus_anatinus
ENSMOCG00000008665	Xrn1	99	94.770	ENSOCUG00000001861	XRN1	56	94.770	Oryctolagus_cuniculus
ENSMOCG00000008665	Xrn1	99	79.048	ENSORLG00000013005	xrn1	58	78.673	Oryzias_latipes
ENSMOCG00000008665	Xrn1	99	79.206	ENSORLG00020005559	xrn1	59	78.831	Oryzias_latipes_hni
ENSMOCG00000008665	Xrn1	99	78.730	ENSORLG00015022523	xrn1	61	78.481	Oryzias_latipes_hsok
ENSMOCG00000008665	Xrn1	99	78.537	ENSOMEG00000015397	xrn1	62	77.848	Oryzias_melastigma
ENSMOCG00000008665	Xrn1	99	89.382	ENSOGAG00000000170	XRN1	58	89.382	Otolemur_garnettii
ENSMOCG00000008665	Xrn1	99	94.295	ENSOARG00000006343	XRN1	57	94.295	Ovis_aries
ENSMOCG00000008665	Xrn1	99	94.295	ENSPPAG00000010180	XRN1	58	94.295	Pan_paniscus
ENSMOCG00000008665	Xrn1	99	94.304	ENSPPRG00000007125	XRN1	57	94.304	Panthera_pardus
ENSMOCG00000008665	Xrn1	99	94.146	ENSPTIG00000021081	XRN1	57	94.146	Panthera_tigris_altaica
ENSMOCG00000008665	Xrn1	99	94.295	ENSPTRG00000015482	XRN1	58	94.295	Pan_troglodytes
ENSMOCG00000008665	Xrn1	99	95.246	ENSPANG00000010638	XRN1	58	95.246	Papio_anubis
ENSMOCG00000008665	Xrn1	99	87.005	ENSPSIG00000018050	XRN1	55	86.730	Pelodiscus_sinensis
ENSMOCG00000008665	Xrn1	99	73.450	ENSPMGG00000002648	xrn1	98	73.973	Periophthalmus_magnuspinnatus
ENSMOCG00000008665	Xrn1	100	96.698	ENSPEMG00000020610	Xrn1	100	96.698	Peromyscus_maniculatus_bairdii
ENSMOCG00000008665	Xrn1	92	58.631	ENSPMAG00000002975	xrn1	82	55.818	Petromyzon_marinus
ENSMOCG00000008665	Xrn1	99	88.553	ENSPCIG00000028735	XRN1	99	87.929	Phascolarctos_cinereus
ENSMOCG00000008665	Xrn1	99	78.110	ENSPFOG00000013932	xrn1	62	78.110	Poecilia_formosa
ENSMOCG00000008665	Xrn1	99	78.254	ENSPLAG00000021653	xrn1	62	78.413	Poecilia_latipinna
ENSMOCG00000008665	Xrn1	99	78.041	ENSPMEG00000003076	xrn1	61	78.041	Poecilia_mexicana
ENSMOCG00000008665	Xrn1	99	77.603	ENSPREG00000021147	xrn1	59	75.119	Poecilia_reticulata
ENSMOCG00000008665	Xrn1	99	95.087	ENSPPYG00000014172	XRN1	58	95.087	Pongo_abelii
ENSMOCG00000008665	Xrn1	92	93.590	ENSPCAG00000005638	XRN1	58	93.590	Procavia_capensis
ENSMOCG00000008665	Xrn1	100	94.427	ENSPCOG00000013089	XRN1	99	94.427	Propithecus_coquereli
ENSMOCG00000008665	Xrn1	99	91.964	ENSPVAG00000016265	XRN1	57	91.964	Pteropus_vampyrus
ENSMOCG00000008665	Xrn1	99	77.338	ENSPNYG00000010570	xrn1	58	77.251	Pundamilia_nyererei
ENSMOCG00000008665	Xrn1	99	76.461	ENSPNAG00000023531	xrn1	58	76.461	Pygocentrus_nattereri
ENSMOCG00000008665	Xrn1	99	96.513	ENSRNOG00000042951	Xrn1	57	96.513	Rattus_norvegicus
ENSMOCG00000008665	Xrn1	99	95.087	ENSRBIG00000041227	XRN1	58	95.087	Rhinopithecus_bieti
ENSMOCG00000008665	Xrn1	91	54.496	YGL173C	XRN1	57	54.496	Saccharomyces_cerevisiae
ENSMOCG00000008665	Xrn1	99	95.246	ENSSBOG00000029561	XRN1	58	95.246	Saimiri_boliviensis_boliviensis
ENSMOCG00000008665	Xrn1	97	88.119	ENSSHAG00000016207	XRN1	57	88.119	Sarcophilus_harrisii
ENSMOCG00000008665	Xrn1	99	78.855	ENSSFOG00015024211	xrn1	59	79.014	Scleropages_formosus
ENSMOCG00000008665	Xrn1	99	74.388	ENSSMAG00000016534	xrn1	64	74.388	Scophthalmus_maximus
ENSMOCG00000008665	Xrn1	99	79.239	ENSSDUG00000010306	xrn1	62	79.022	Seriola_dumerili
ENSMOCG00000008665	Xrn1	99	79.239	ENSSLDG00000021543	xrn1	61	79.022	Seriola_lalandi_dorsalis
ENSMOCG00000008665	Xrn1	89	91.060	ENSSARG00000007741	-	63	91.060	Sorex_araneus
ENSMOCG00000008665	Xrn1	50	76.268	ENSSPAG00000009856	-	96	76.673	Stegastes_partitus
ENSMOCG00000008665	Xrn1	99	87.758	ENSTGUG00000008498	XRN1	57	88.076	Taeniopygia_guttata
ENSMOCG00000008665	Xrn1	99	77.476	ENSTRUG00000004895	xrn1	96	76.972	Takifugu_rubripes
ENSMOCG00000008665	Xrn1	97	76.112	ENSTNIG00000017615	xrn1	58	74.127	Tetraodon_nigroviridis
ENSMOCG00000008665	Xrn1	91	97.305	ENSTBEG00000003256	XRN1	60	85.965	Tupaia_belangeri
ENSMOCG00000008665	Xrn1	99	93.072	ENSTTRG00000012914	XRN1	57	93.072	Tursiops_truncatus
ENSMOCG00000008665	Xrn1	99	93.731	ENSUAMG00000001608	XRN1	99	91.476	Ursus_americanus
ENSMOCG00000008665	Xrn1	99	94.770	ENSUMAG00000013625	XRN1	57	94.770	Ursus_maritimus
ENSMOCG00000008665	Xrn1	99	94.770	ENSVPAG00000004690	XRN1	57	94.770	Vicugna_pacos
ENSMOCG00000008665	Xrn1	99	94.802	ENSVVUG00000024461	XRN1	99	94.802	Vulpes_vulpes
ENSMOCG00000008665	Xrn1	99	82.148	ENSXETG00000000619	xrn1	99	88.281	Xenopus_tropicalis
ENSMOCG00000008665	Xrn1	99	77.583	ENSXCOG00000007917	xrn1	58	77.266	Xiphophorus_couchianus
ENSMOCG00000008665	Xrn1	99	76.630	ENSXMAG00000018320	xrn1	60	77.266	Xiphophorus_maculatus