EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMOCG00000009464 (Gene tree)
Gene ID: 102001565
Gene Symbol: Smarca1
Alias: 5730494M04Rik|Snf2l
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Microtus_ochrogaster
Status: putative
Strand: Plus strand
Length: 92065 bases
Position: chrX:846416-938480
Accession: 102001565
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMOCP00000009350	ResIII	PF04851.15	1e-11	1	1
ENSMOCP00000009345	ResIII	PF04851.15	1.1e-11	1	1
ENSMOCP00000009350	DEAD	PF00270.29	5.1e-07	1	1
ENSMOCP00000009345	DEAD	PF00270.29	5.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMOCT00000012189	-	3998	XM_005358410	ENSMOCP00000009345	1063 (aa)	XP_005358467	UPI00038C63CE
ENSMOCT00000012197	-	3165	-	ENSMOCP00000009350	1054 (aa)	-	UPI00038BDDF1

Gene Model

Click here to download ENSMOCG00000009464's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000009464's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMOCG00000009464	Smarca1	54	30.166	ENSMOCG00000021344	Ercc6l	52	30.722
ENSMOCG00000009464	Smarca1	50	47.410	ENSMOCG00000019342	Hells	67	47.410
ENSMOCG00000009464	Smarca1	55	42.088	ENSMOCG00000006305	Chd1l	62	42.955
ENSMOCG00000009464	Smarca1	93	83.874	ENSMOCG00000016986	-	93	83.874

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMOCG00000009464	Smarca1	100	96.110	ENSG00000102038	SMARCA1	100	96.110	Homo_sapiens
ENSMOCG00000009464	Smarca1	92	81.957	ENSAPOG00000016035	smarca5	99	82.628	Acanthochromis_polyacanthus
ENSMOCG00000009464	Smarca1	100	93.860	ENSAMEG00000015218	SMARCA1	100	93.860	Ailuropoda_melanoleuca
ENSMOCG00000009464	Smarca1	85	82.835	ENSACIG00000016982	smarca5	99	82.924	Amphilophus_citrinellus
ENSMOCG00000009464	Smarca1	92	81.957	ENSAOCG00000015578	smarca5	95	81.005	Amphiprion_ocellaris
ENSMOCG00000009464	Smarca1	92	81.957	ENSAPEG00000011117	smarca5	99	83.019	Amphiprion_percula
ENSMOCG00000009464	Smarca1	97	78.571	ENSATEG00000012894	smarca5	93	83.527	Anabas_testudineus
ENSMOCG00000009464	Smarca1	93	90.983	ENSAPLG00000013149	SMARCA1	100	90.983	Anas_platyrhynchos
ENSMOCG00000009464	Smarca1	97	88.309	ENSACAG00000011376	SMARCA1	98	88.309	Anolis_carolinensis
ENSMOCG00000009464	Smarca1	98	90.892	ENSANAG00000023098	SMARCA1	100	90.593	Aotus_nancymaae
ENSMOCG00000009464	Smarca1	96	79.492	ENSACLG00000025356	smarca5	95	81.545	Astatotilapia_calliptera
ENSMOCG00000009464	Smarca1	97	79.532	ENSAMXG00000005709	smarca5	94	82.347	Astyanax_mexicanus
ENSMOCG00000009464	Smarca1	88	86.774	ENSAMXG00000011227	smarca1	99	89.333	Astyanax_mexicanus
ENSMOCG00000009464	Smarca1	99	94.672	ENSBTAG00000002292	SMARCA1	100	95.338	Bos_taurus
ENSMOCG00000009464	Smarca1	92	63.099	WBGene00002169	isw-1	96	63.330	Caenorhabditis_elegans
ENSMOCG00000009464	Smarca1	98	95.877	ENSCJAG00000002868	SMARCA1	100	95.484	Callithrix_jacchus
ENSMOCG00000009464	Smarca1	100	86.204	ENSCAFG00000018673	SMARCA1	99	87.662	Canis_familiaris
ENSMOCG00000009464	Smarca1	100	95.673	ENSCAFG00020001751	SMARCA1	100	95.673	Canis_lupus_dingo
ENSMOCG00000009464	Smarca1	100	94.797	ENSCHIG00000009837	SMARCA1	100	95.459	Capra_hircus
ENSMOCG00000009464	Smarca1	95	95.920	ENSTSYG00000004240	SMARCA1	98	96.323	Carlito_syrichta
ENSMOCG00000009464	Smarca1	100	94.402	ENSCPOG00000013601	SMARCA1	100	94.402	Cavia_porcellus
ENSMOCG00000009464	Smarca1	98	92.809	ENSCCAG00000030817	SMARCA1	100	92.474	Cebus_capucinus
ENSMOCG00000009464	Smarca1	100	95.066	ENSCATG00000015921	SMARCA1	100	95.066	Cercocebus_atys
ENSMOCG00000009464	Smarca1	98	95.358	ENSCLAG00000002171	SMARCA1	100	95.066	Chinchilla_lanigera
ENSMOCG00000009464	Smarca1	100	95.673	ENSCSAG00000008460	SMARCA1	100	95.673	Chlorocebus_sabaeus
ENSMOCG00000009464	Smarca1	97	89.061	ENSCPBG00000001146	SMARCA1	94	91.209	Chrysemys_picta_bellii
ENSMOCG00000009464	Smarca1	96	70.175	ENSCING00000004110	swi/snf	98	72.088	Ciona_intestinalis
ENSMOCG00000009464	Smarca1	92	72.273	ENSCSAVG00000004620	-	100	73.497	Ciona_savignyi
ENSMOCG00000009464	Smarca1	98	95.973	ENSCANG00000007183	SMARCA1	100	95.579	Colobus_angolensis_palliatus
ENSMOCG00000009464	Smarca1	100	97.346	ENSCGRG00001010776	Smarca1	100	97.346	Cricetulus_griseus_chok1gshd
ENSMOCG00000009464	Smarca1	95	97.006	ENSCGRG00000015301	Smarca1	99	97.006	Cricetulus_griseus_crigri
ENSMOCG00000009464	Smarca1	92	82.110	ENSCSEG00000000328	smarca5	95	81.206	Cynoglossus_semilaevis
ENSMOCG00000009464	Smarca1	93	81.560	ENSCVAG00000008668	smarca5	99	82.803	Cyprinodon_variegatus
ENSMOCG00000009464	Smarca1	94	83.988	ENSDARG00000012776	smarca1	98	83.988	Danio_rerio
ENSMOCG00000009464	Smarca1	97	78.973	ENSDARG00000052348	smarca5	94	82.143	Danio_rerio
ENSMOCG00000009464	Smarca1	99	92.939	ENSDNOG00000004315	SMARCA1	100	92.939	Dasypus_novemcinctus
ENSMOCG00000009464	Smarca1	100	94.023	ENSDORG00000009270	Smarca1	100	93.833	Dipodomys_ordii
ENSMOCG00000009464	Smarca1	94	71.400	FBgn0011604	Iswi	98	71.275	Drosophila_melanogaster
ENSMOCG00000009464	Smarca1	79	92.857	ENSETEG00000017426	SMARCA1	86	92.857	Echinops_telfairi
ENSMOCG00000009464	Smarca1	93	79.472	ENSEBUG00000001239	smarca5	96	79.472	Eptatretus_burgeri
ENSMOCG00000009464	Smarca1	93	92.276	ENSEASG00005008218	SMARCA1	100	91.759	Equus_asinus_asinus
ENSMOCG00000009464	Smarca1	100	94.934	ENSECAG00000012106	SMARCA1	100	95.591	Equus_caballus
ENSMOCG00000009464	Smarca1	77	95.695	ENSEEUG00000014927	SMARCA1	84	95.695	Erinaceus_europaeus
ENSMOCG00000009464	Smarca1	94	85.614	ENSELUG00000010515	smarca1	97	85.698	Esox_lucius
ENSMOCG00000009464	Smarca1	100	95.673	ENSFCAG00000018496	SMARCA1	100	95.673	Felis_catus
ENSMOCG00000009464	Smarca1	88	90.378	ENSFALG00000000209	SMARCA1	98	91.557	Ficedula_albicollis
ENSMOCG00000009464	Smarca1	95	96.393	ENSFDAG00000009818	SMARCA1	98	96.393	Fukomys_damarensis
ENSMOCG00000009464	Smarca1	93	82.067	ENSFHEG00000007687	smarca5	91	84.795	Fundulus_heteroclitus
ENSMOCG00000009464	Smarca1	94	88.446	ENSGALG00000008431	SMARCA1	99	88.614	Gallus_gallus
ENSMOCG00000009464	Smarca1	93	81.662	ENSGAFG00000017731	smarca5	95	81.106	Gambusia_affinis
ENSMOCG00000009464	Smarca1	91	91.975	ENSGAGG00000023575	SMARCA1	100	91.975	Gopherus_agassizii
ENSMOCG00000009464	Smarca1	71	96.000	ENSGGOG00000012841	-	98	96.000	Gorilla_gorilla
ENSMOCG00000009464	Smarca1	100	94.877	ENSHGLG00000003080	SMARCA1	100	94.877	Heterocephalus_glaber_female
ENSMOCG00000009464	Smarca1	94	95.538	ENSHGLG00100001102	SMARCA1	100	95.105	Heterocephalus_glaber_male
ENSMOCG00000009464	Smarca1	92	82.096	ENSHCOG00000005458	smarca5	95	81.407	Hippocampus_comes
ENSMOCG00000009464	Smarca1	97	79.435	ENSIPUG00000005229	SMARCA5	96	82.041	Ictalurus_punctatus
ENSMOCG00000009464	Smarca1	95	84.080	ENSIPUG00000016905	Smarca1	99	85.671	Ictalurus_punctatus
ENSMOCG00000009464	Smarca1	100	95.446	ENSSTOG00000014524	SMARCA1	100	95.446	Ictidomys_tridecemlineatus
ENSMOCG00000009464	Smarca1	100	95.484	ENSJJAG00000002593	Smarca1	100	95.014	Jaculus_jaculus
ENSMOCG00000009464	Smarca1	92	81.892	ENSKMAG00000003777	smarca5	95	81.206	Kryptolebias_marmoratus
ENSMOCG00000009464	Smarca1	89	81.866	ENSLBEG00000013295	SMARCA1	100	84.197	Labrus_bergylta
ENSMOCG00000009464	Smarca1	94	81.307	ENSLBEG00000018112	smarca5	95	81.307	Labrus_bergylta
ENSMOCG00000009464	Smarca1	95	87.783	ENSLACG00000016697	SMARCA1	98	88.711	Latimeria_chalumnae
ENSMOCG00000009464	Smarca1	95	87.078	ENSLOCG00000014591	smarca1	97	87.325	Lepisosteus_oculatus
ENSMOCG00000009464	Smarca1	95	95.328	ENSLAFG00000000896	SMARCA1	99	95.513	Loxodonta_africana
ENSMOCG00000009464	Smarca1	100	95.673	ENSMFAG00000002117	SMARCA1	100	95.066	Macaca_fascicularis
ENSMOCG00000009464	Smarca1	100	95.066	ENSMMUG00000008818	SMARCA1	99	96.354	Macaca_mulatta
ENSMOCG00000009464	Smarca1	100	95.066	ENSMNEG00000041768	SMARCA1	100	95.066	Macaca_nemestrina
ENSMOCG00000009464	Smarca1	98	95.973	ENSMLEG00000043198	SMARCA1	100	95.579	Mandrillus_leucophaeus
ENSMOCG00000009464	Smarca1	93	81.864	ENSMAMG00000014294	smarca5	95	81.307	Mastacembelus_armatus
ENSMOCG00000009464	Smarca1	96	79.492	ENSMZEG00005009369	smarca5	95	81.545	Maylandia_zebra
ENSMOCG00000009464	Smarca1	95	88.824	ENSMGAG00000007042	SMARCA1	99	89.240	Meleagris_gallopavo
ENSMOCG00000009464	Smarca1	100	97.913	ENSMAUG00000008133	Smarca1	100	97.913	Mesocricetus_auratus
ENSMOCG00000009464	Smarca1	98	95.302	ENSMICG00000015768	SMARCA1	100	94.450	Microcebus_murinus
ENSMOCG00000009464	Smarca1	94	79.397	ENSMMOG00000005547	smarca5	99	79.397	Mola_mola
ENSMOCG00000009464	Smarca1	98	88.065	ENSMODG00000013187	-	99	88.054	Monodelphis_domestica
ENSMOCG00000009464	Smarca1	92	81.587	ENSMALG00000002081	smarca5	97	81.167	Monopterus_albus
ENSMOCG00000009464	Smarca1	100	97.178	MGP_CAROLIEiJ_G0033034	Smarca1	100	97.178	Mus_caroli
ENSMOCG00000009464	Smarca1	100	97.272	ENSMUSG00000031099	Smarca1	100	97.272	Mus_musculus
ENSMOCG00000009464	Smarca1	100	97.178	MGP_PahariEiJ_G0031579	Smarca1	100	97.178	Mus_pahari
ENSMOCG00000009464	Smarca1	100	97.272	MGP_SPRETEiJ_G0034192	Smarca1	100	97.272	Mus_spretus
ENSMOCG00000009464	Smarca1	99	95.989	ENSMPUG00000017423	SMARCA1	95	94.419	Mustela_putorius_furo
ENSMOCG00000009464	Smarca1	98	93.204	ENSMLUG00000029614	SMARCA1	100	92.015	Myotis_lucifugus
ENSMOCG00000009464	Smarca1	100	96.774	ENSNGAG00000006492	Smarca1	100	96.774	Nannospalax_galili
ENSMOCG00000009464	Smarca1	93	82.067	ENSNBRG00000004463	smarca5	99	81.645	Neolamprologus_brichardi
ENSMOCG00000009464	Smarca1	97	95.716	ENSNLEG00000015179	SMARCA1	100	93.860	Nomascus_leucogenys
ENSMOCG00000009464	Smarca1	90	80.987	ENSMEUG00000008819	SMARCA1	99	81.224	Notamacropus_eugenii
ENSMOCG00000009464	Smarca1	98	95.261	ENSODEG00000012163	SMARCA1	100	94.782	Octodon_degus
ENSMOCG00000009464	Smarca1	96	79.590	ENSONIG00000009993	smarca5	95	81.645	Oreochromis_niloticus
ENSMOCG00000009464	Smarca1	91	92.284	ENSOANG00000002862	SMARCA1	100	92.284	Ornithorhynchus_anatinus
ENSMOCG00000009464	Smarca1	100	94.167	ENSOCUG00000001047	SMARCA1	100	94.262	Oryctolagus_cuniculus
ENSMOCG00000009464	Smarca1	92	81.994	ENSORLG00000021998	smarca5	99	78.973	Oryzias_latipes
ENSMOCG00000009464	Smarca1	92	82.096	ENSORLG00020017679	smarca5	99	78.978	Oryzias_latipes_hni
ENSMOCG00000009464	Smarca1	92	81.994	ENSORLG00015017210	smarca5	95	81.206	Oryzias_latipes_hsok
ENSMOCG00000009464	Smarca1	92	81.892	ENSOMEG00000000086	smarca5	95	81.106	Oryzias_melastigma
ENSMOCG00000009464	Smarca1	100	95.541	ENSOGAG00000004399	SMARCA1	100	95.541	Otolemur_garnettii
ENSMOCG00000009464	Smarca1	95	94.794	ENSOARG00000014638	SMARCA1	100	96.345	Ovis_aries
ENSMOCG00000009464	Smarca1	100	95.673	ENSPPAG00000034647	SMARCA1	100	95.673	Pan_paniscus
ENSMOCG00000009464	Smarca1	100	95.673	ENSPPRG00000008929	SMARCA1	100	95.673	Panthera_pardus
ENSMOCG00000009464	Smarca1	95	94.227	ENSPTIG00000000915	SMARCA1	98	94.406	Panthera_tigris_altaica
ENSMOCG00000009464	Smarca1	100	95.673	ENSPTRG00000049876	SMARCA1	100	95.066	Pan_troglodytes
ENSMOCG00000009464	Smarca1	100	95.673	ENSPANG00000003871	SMARCA1	100	95.673	Papio_anubis
ENSMOCG00000009464	Smarca1	93	84.725	ENSPKIG00000013411	smarca1	96	87.236	Paramormyrops_kingsleyae
ENSMOCG00000009464	Smarca1	94	90.597	ENSPSIG00000010101	SMARCA1	100	91.667	Pelodiscus_sinensis
ENSMOCG00000009464	Smarca1	100	98.292	ENSPEMG00000017503	Smarca1	100	98.292	Peromyscus_maniculatus_bairdii
ENSMOCG00000009464	Smarca1	95	90.656	ENSPCIG00000015460	SMARCA1	98	91.009	Phascolarctos_cinereus
ENSMOCG00000009464	Smarca1	92	81.892	ENSPFOG00000007649	smarca5	95	81.106	Poecilia_formosa
ENSMOCG00000009464	Smarca1	92	81.892	ENSPLAG00000003363	smarca5	95	81.106	Poecilia_latipinna
ENSMOCG00000009464	Smarca1	92	81.790	ENSPMEG00000019849	smarca5	95	81.005	Poecilia_mexicana
ENSMOCG00000009464	Smarca1	92	81.790	ENSPREG00000023250	smarca5	95	81.005	Poecilia_reticulata
ENSMOCG00000009464	Smarca1	98	93.289	ENSPPYG00000020703	SMARCA1	100	92.944	Pongo_abelii
ENSMOCG00000009464	Smarca1	78	90.909	ENSPCOG00000020722	SMARCA1	94	91.311	Propithecus_coquereli
ENSMOCG00000009464	Smarca1	92	95.791	ENSPVAG00000003805	SMARCA1	94	95.791	Pteropus_vampyrus
ENSMOCG00000009464	Smarca1	56	83.288	ENSPNYG00000012299	smarca5	92	82.133	Pundamilia_nyererei
ENSMOCG00000009464	Smarca1	100	97.272	ENSRNOG00000003762	Smarca1	100	97.272	Rattus_norvegicus
ENSMOCG00000009464	Smarca1	98	95.973	ENSRROG00000034167	SMARCA1	100	95.579	Rhinopithecus_roxellana
ENSMOCG00000009464	Smarca1	95	95.347	ENSSBOG00000020641	SMARCA1	100	96.751	Saimiri_boliviensis_boliviensis
ENSMOCG00000009464	Smarca1	91	86.023	ENSSHAG00000013518	SMARCA1	99	86.023	Sarcophilus_harrisii
ENSMOCG00000009464	Smarca1	98	83.605	ENSSFOG00015009043	smarca1	98	86.056	Scleropages_formosus
ENSMOCG00000009464	Smarca1	95	80.178	ENSSFOG00015016794	smarca5	100	82.474	Scleropages_formosus
ENSMOCG00000009464	Smarca1	93	81.351	ENSSMAG00000004801	smarca5	95	81.351	Scophthalmus_maximus
ENSMOCG00000009464	Smarca1	93	81.662	ENSSDUG00000020690	smarca5	96	81.106	Seriola_dumerili
ENSMOCG00000009464	Smarca1	93	81.662	ENSSLDG00000025190	smarca5	96	81.106	Seriola_lalandi_dorsalis
ENSMOCG00000009464	Smarca1	87	90.217	ENSSARG00000000842	SMARCA1	86	97.163	Sorex_araneus
ENSMOCG00000009464	Smarca1	95	89.067	ENSSPUG00000000590	SMARCA1	98	86.855	Sphenodon_punctatus
ENSMOCG00000009464	Smarca1	93	81.560	ENSSPAG00000002894	smarca5	97	83.042	Stegastes_partitus
ENSMOCG00000009464	Smarca1	99	93.815	ENSSSCG00000012649	SMARCA1	100	94.672	Sus_scrofa
ENSMOCG00000009464	Smarca1	93	90.476	ENSTGUG00000003899	-	100	90.476	Taeniopygia_guttata
ENSMOCG00000009464	Smarca1	93	81.966	ENSTRUG00000014094	smarca5	95	81.407	Takifugu_rubripes
ENSMOCG00000009464	Smarca1	92	81.549	ENSTNIG00000017717	smarca5	94	80.704	Tetraodon_nigroviridis
ENSMOCG00000009464	Smarca1	94	90.060	ENSTBEG00000014973	SMARCA1	100	90.060	Tupaia_belangeri
ENSMOCG00000009464	Smarca1	94	93.636	ENSTTRG00000006168	SMARCA1	100	93.636	Tursiops_truncatus
ENSMOCG00000009464	Smarca1	100	95.202	ENSUAMG00000020201	SMARCA1	100	95.202	Ursus_americanus
ENSMOCG00000009464	Smarca1	94	92.292	ENSUMAG00000004073	SMARCA1	99	95.943	Ursus_maritimus
ENSMOCG00000009464	Smarca1	73	98.413	ENSVPAG00000010492	-	80	98.413	Vicugna_pacos
ENSMOCG00000009464	Smarca1	95	96.318	ENSVVUG00000008878	SMARCA1	100	95.876	Vulpes_vulpes
ENSMOCG00000009464	Smarca1	94	87.712	ENSXETG00000001526	smarca1	99	87.712	Xenopus_tropicalis
ENSMOCG00000009464	Smarca1	93	81.560	ENSXCOG00000011170	smarca5	98	81.005	Xiphophorus_couchianus
ENSMOCG00000009464	Smarca1	93	81.560	ENSXMAG00000009678	smarca5	97	83.443	Xiphophorus_maculatus