EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSMOCG00000012018 (Gene tree)
Gene ID
101996059
Gene Symbol
Lsm5
Alias
2010208O10Rik|2310034K10Rik
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Microtus_ochrogaster
Status
putative
Strand
Plus strand
Length
2923 bases
Position
chrLG3:40460377-40463299
Accession
101996059
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMOCP00000011758LSMPF01423.222.3e-2011
ENSMOCP00000011764LSMPF01423.221.9e-0611
ENSMOCP00000011762LSMPF01423.222.9e-0611
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMOCT00000015446-180-ENSMOCP0000001176459 (aa)--
ENSMOCT00000015439-541XM_005360793ENSMOCP0000001175891 (aa)XP_005360850UPI0000003ED3
ENSMOCT00000015443-180-ENSMOCP0000001176259 (aa)-UPI00001F3CA4
Gene Model
Click here to download ENSMOCG00000012018's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000012018's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMOCG00000012018Lsm58234.667ENSMOCG00000014269Lsm37434.667
ENSMOCG00000012018Lsm57632.877ENSMOCG00000019341Snrpe7732.877
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMOCG00000012018Lsm5100100.000ENSG00000106355LSM5100100.000Homo_sapiens
ENSMOCG00000012018Lsm59095.122ENSAPOG00000011743LSM510096.774Acanthochromis_polyacanthus
ENSMOCG00000012018Lsm510095.604ENSAPOG00000020779LSM510095.604Acanthochromis_polyacanthus
ENSMOCG00000012018Lsm5100100.000ENSAMEG00000006700LSM5100100.000Ailuropoda_melanoleuca
ENSMOCG00000012018Lsm59394.545ENSACIG00000019185lsm59894.545Amphilophus_citrinellus
ENSMOCG00000012018Lsm510095.604ENSAOCG00000001636lsm510095.604Amphiprion_ocellaris
ENSMOCG00000012018Lsm57693.333ENSAPEG00000008201lsm510096.774Amphiprion_percula
ENSMOCG00000012018Lsm510095.604ENSAPEG00000008151lsm510095.604Amphiprion_percula
ENSMOCG00000012018Lsm510093.220ENSATEG00000020470lsm510093.220Anabas_testudineus
ENSMOCG00000012018Lsm581100.000ENSAPLG00000008171LSM5100100.000Anas_platyrhynchos
ENSMOCG00000012018Lsm580100.000ENSACAG00000009530LSM593100.000Anolis_carolinensis
ENSMOCG00000012018Lsm510079.121ENSANAG00000037758-10079.121Aotus_nancymaae
ENSMOCG00000012018Lsm59995.556ENSANAG00000024192-9495.556Aotus_nancymaae
ENSMOCG00000012018Lsm510098.901ENSANAG00000034409-10098.901Aotus_nancymaae
ENSMOCG00000012018Lsm59695.402ENSACLG00000012891lsm59995.402Astatotilapia_calliptera
ENSMOCG00000012018Lsm510081.915ENSAMXG00000035543lsm510081.915Astyanax_mexicanus
ENSMOCG00000012018Lsm5100100.000ENSBTAG00000002332LSM5100100.000Bos_taurus
ENSMOCG00000012018Lsm59773.684ENSBTAG00000052014-7573.684Bos_taurus
ENSMOCG00000012018Lsm510073.626WBGene00003079lsm-510073.626Caenorhabditis_elegans
ENSMOCG00000012018Lsm5100100.000ENSCJAG00000047379LSM510087.500Callithrix_jacchus
ENSMOCG00000012018Lsm59986.667ENSCJAG00000005678-10086.667Callithrix_jacchus
ENSMOCG00000012018Lsm59785.965ENSCAFG00000030781-5894.000Canis_familiaris
ENSMOCG00000012018Lsm510098.901ENSCAFG00000019261-10098.901Canis_familiaris
ENSMOCG00000012018Lsm5100100.000ENSCAFG00020004946LSM5100100.000Canis_lupus_dingo
ENSMOCG00000012018Lsm58175.676ENSCHIG00000021428-9572.727Capra_hircus
ENSMOCG00000012018Lsm510097.802ENSCHIG00000004079-10097.802Capra_hircus
ENSMOCG00000012018Lsm5100100.000ENSCHIG00000024539LSM5100100.000Capra_hircus
ENSMOCG00000012018Lsm510081.319ENSTSYG00000026530-9181.319Carlito_syrichta
ENSMOCG00000012018Lsm510086.813ENSTSYG00000028728-10086.813Carlito_syrichta
ENSMOCG00000012018Lsm5100100.000ENSTSYG00000006449-100100.000Carlito_syrichta
ENSMOCG00000012018Lsm510074.725ENSTSYG00000036637-10074.725Carlito_syrichta
ENSMOCG00000012018Lsm58292.000ENSCAPG00000006980LSM510092.000Cavia_aperea
ENSMOCG00000012018Lsm5100100.000ENSCPOG00000036386LSM5100100.000Cavia_porcellus
ENSMOCG00000012018Lsm510068.132ENSCCAG00000037334-10068.132Cebus_capucinus
ENSMOCG00000012018Lsm510097.802ENSCCAG00000032123-10097.802Cebus_capucinus
ENSMOCG00000012018Lsm510081.319ENSCCAG00000032792-10081.319Cebus_capucinus
ENSMOCG00000012018Lsm5100100.000ENSCCAG00000037808-100100.000Cebus_capucinus
ENSMOCG00000012018Lsm510098.901ENSCCAG00000000821-10098.901Cebus_capucinus
ENSMOCG00000012018Lsm59988.889ENSCATG00000014790-9598.182Cercocebus_atys
ENSMOCG00000012018Lsm5100100.000ENSCATG00000040218LSM5100100.000Cercocebus_atys
ENSMOCG00000012018Lsm5100100.000ENSCLAG00000000202LSM5100100.000Chinchilla_lanigera
ENSMOCG00000012018Lsm510083.516ENSCLAG00000005062-9083.516Chinchilla_lanigera
ENSMOCG00000012018Lsm582100.000ENSCHOG00000005335LSM599100.000Choloepus_hoffmanni
ENSMOCG00000012018Lsm5100100.000ENSCPBG00000013685LSM5100100.000Chrysemys_picta_bellii
ENSMOCG00000012018Lsm59888.764ENSCING00000020625-9988.764Ciona_intestinalis
ENSMOCG00000012018Lsm59588.372ENSCSAVG00000001439-9888.372Ciona_savignyi
ENSMOCG00000012018Lsm5100100.000ENSCANG00000039909LSM5100100.000Colobus_angolensis_palliatus
ENSMOCG00000012018Lsm5100100.000ENSCGRG00001015461Lsm5100100.000Cricetulus_griseus_chok1gshd
ENSMOCG00000012018Lsm582100.000ENSCGRG00000007677Lsm5100100.000Cricetulus_griseus_crigri
ENSMOCG00000012018Lsm510093.220ENSCSEG00000015286lsm510093.220Cynoglossus_semilaevis
ENSMOCG00000012018Lsm510094.505ENSCVAG00000004262lsm510094.505Cyprinodon_variegatus
ENSMOCG00000012018Lsm510094.505ENSDARG00000071573lsm510096.774Danio_rerio
ENSMOCG00000012018Lsm59689.655ENSDNOG00000049495-9689.655Dasypus_novemcinctus
ENSMOCG00000012018Lsm5100100.000ENSDNOG00000034958LSM5100100.000Dasypus_novemcinctus
ENSMOCG00000012018Lsm5100100.000ENSDORG00000009422Lsm5100100.000Dipodomys_ordii
ENSMOCG00000012018Lsm59581.395FBgn0035675CG66109581.395Drosophila_melanogaster
ENSMOCG00000012018Lsm5100100.000ENSETEG00000018068LSM5100100.000Echinops_telfairi
ENSMOCG00000012018Lsm59975.556ENSETEG00000001469-9975.556Echinops_telfairi
ENSMOCG00000012018Lsm58181.081ENSETEG00000016074-9881.081Echinops_telfairi
ENSMOCG00000012018Lsm59867.416ENSETEG00000000777-9967.416Echinops_telfairi
ENSMOCG00000012018Lsm510079.121ENSETEG00000010651-10079.121Echinops_telfairi
ENSMOCG00000012018Lsm510091.209ENSEBUG00000008540lsm510091.209Eptatretus_burgeri
ENSMOCG00000012018Lsm5100100.000ENSEASG00005003500LSM5100100.000Equus_asinus_asinus
ENSMOCG00000012018Lsm510085.714ENSECAG00000018445LSM510085.714Equus_caballus
ENSMOCG00000012018Lsm57688.889ENSEEUG00000004102LSM59594.737Erinaceus_europaeus
ENSMOCG00000012018Lsm510094.505ENSELUG00000007792lsm510094.505Esox_lucius
ENSMOCG00000012018Lsm5100100.000ENSFCAG00000000230LSM5100100.000Felis_catus
ENSMOCG00000012018Lsm584100.000ENSFALG00000001892LSM592100.000Ficedula_albicollis
ENSMOCG00000012018Lsm5100100.000ENSFDAG00000008767LSM5100100.000Fukomys_damarensis
ENSMOCG00000012018Lsm510065.934ENSFDAG00000008685-10065.934Fukomys_damarensis
ENSMOCG00000012018Lsm59976.667ENSFHEG00000004011lsm59676.667Fundulus_heteroclitus
ENSMOCG00000012018Lsm59994.444ENSGMOG00000018235lsm510094.444Gadus_morhua
ENSMOCG00000012018Lsm510098.901ENSGALG00000041625LSM510098.901Gallus_gallus
ENSMOCG00000012018Lsm57693.333ENSGAFG00000016824lsm510096.774Gambusia_affinis
ENSMOCG00000012018Lsm510095.604ENSGACG00000005528lsm510095.604Gasterosteus_aculeatus
ENSMOCG00000012018Lsm5100100.000ENSGAGG00000015593LSM5100100.000Gopherus_agassizii
ENSMOCG00000012018Lsm5100100.000ENSGGOG00000043469LSM5100100.000Gorilla_gorilla
ENSMOCG00000012018Lsm59695.402ENSHBUG00000013773lsm59995.402Haplochromis_burtoni
ENSMOCG00000012018Lsm5100100.000ENSHGLG00000011765LSM5100100.000Heterocephalus_glaber_female
ENSMOCG00000012018Lsm510096.703ENSHGLG00100015610LSM510096.703Heterocephalus_glaber_male
ENSMOCG00000012018Lsm510093.220ENSHCOG00000008288lsm510093.220Hippocampus_comes
ENSMOCG00000012018Lsm510093.407ENSIPUG00000021095LSM510093.407Ictalurus_punctatus
ENSMOCG00000012018Lsm5100100.000ENSSTOG00000012662LSM5100100.000Ictidomys_tridecemlineatus
ENSMOCG00000012018Lsm59282.558ENSSTOG00000033886-9782.558Ictidomys_tridecemlineatus
ENSMOCG00000012018Lsm510097.802ENSJJAG00000012145-10097.802Jaculus_jaculus
ENSMOCG00000012018Lsm58791.139ENSJJAG00000004475-10091.139Jaculus_jaculus
ENSMOCG00000012018Lsm510070.330ENSJJAG00000016144-9270.330Jaculus_jaculus
ENSMOCG00000012018Lsm510094.505ENSKMAG00000021861lsm510094.505Kryptolebias_marmoratus
ENSMOCG00000012018Lsm58091.489ENSLBEG00000017379lsm59280.357Labrus_bergylta
ENSMOCG00000012018Lsm510086.813ENSLBEG00000009235LSM57086.813Labrus_bergylta
ENSMOCG00000012018Lsm510095.604ENSLACG00000022448LSM510095.604Latimeria_chalumnae
ENSMOCG00000012018Lsm510094.505ENSLOCG00000012903lsm510094.505Lepisosteus_oculatus
ENSMOCG00000012018Lsm510071.429ENSLAFG00000027938-10071.429Loxodonta_africana
ENSMOCG00000012018Lsm5100100.000ENSLAFG00000029579LSM5100100.000Loxodonta_africana
ENSMOCG00000012018Lsm59886.207ENSMFAG00000031187-8197.917Macaca_fascicularis
ENSMOCG00000012018Lsm510096.703ENSMFAG00000030152-10096.703Macaca_fascicularis
ENSMOCG00000012018Lsm5100100.000ENSMFAG00000038508LSM5100100.000Macaca_fascicularis
ENSMOCG00000012018Lsm510096.703ENSMMUG00000030131-10096.703Macaca_mulatta
ENSMOCG00000012018Lsm59990.000ENSMMUG00000039822-10090.000Macaca_mulatta
ENSMOCG00000012018Lsm510087.500ENSMMUG00000045129-10087.500Macaca_mulatta
ENSMOCG00000012018Lsm5100100.000ENSMNEG00000015331LSM5100100.000Macaca_nemestrina
ENSMOCG00000012018Lsm510096.703ENSMNEG00000037935-10096.703Macaca_nemestrina
ENSMOCG00000012018Lsm5100100.000ENSMLEG00000024945LSM5100100.000Mandrillus_leucophaeus
ENSMOCG00000012018Lsm59888.764ENSMLEG00000034037-10088.764Mandrillus_leucophaeus
ENSMOCG00000012018Lsm510091.209ENSMAMG00000012869lsm510091.209Mastacembelus_armatus
ENSMOCG00000012018Lsm59695.402ENSMZEG00005019554lsm59995.402Maylandia_zebra
ENSMOCG00000012018Lsm510098.901ENSMGAG00000012117LSM510098.901Meleagris_gallopavo
ENSMOCG00000012018Lsm510098.901ENSMAUG00000008132-10098.901Mesocricetus_auratus
ENSMOCG00000012018Lsm5100100.000ENSMAUG00000012222Lsm5100100.000Mesocricetus_auratus
ENSMOCG00000012018Lsm5100100.000ENSMICG00000005353LSM5100100.000Microcebus_murinus
ENSMOCG00000012018Lsm59977.778ENSMICG00000033928-9677.778Microcebus_murinus
ENSMOCG00000012018Lsm58497.368ENSMMOG00000004026lsm58797.368Mola_mola
ENSMOCG00000012018Lsm57695.556ENSMODG00000013274-100100.000Monodelphis_domestica
ENSMOCG00000012018Lsm57686.667ENSMALG00000010343lsm510091.935Monopterus_albus
ENSMOCG00000012018Lsm5100100.000MGP_CAROLIEiJ_G0028421Lsm5100100.000Mus_caroli
ENSMOCG00000012018Lsm5100100.000ENSMUSG00000091625Lsm5100100.000Mus_musculus
ENSMOCG00000012018Lsm5100100.000MGP_PahariEiJ_G0022171Lsm5100100.000Mus_pahari
ENSMOCG00000012018Lsm5100100.000MGP_SPRETEiJ_G0029423Lsm5100100.000Mus_spretus
ENSMOCG00000012018Lsm5100100.000ENSMLUG00000017028LSM5100100.000Myotis_lucifugus
ENSMOCG00000012018Lsm5100100.000ENSNGAG00000024142Lsm5100100.000Nannospalax_galili
ENSMOCG00000012018Lsm59978.889ENSNGAG00000022569-9678.889Nannospalax_galili
ENSMOCG00000012018Lsm510087.097ENSNGAG00000017707-10087.097Nannospalax_galili
ENSMOCG00000012018Lsm57693.333ENSNBRG00000011386lsm57696.491Neolamprologus_brichardi
ENSMOCG00000012018Lsm57393.023ENSNBRG00000009964LSM59688.889Neolamprologus_brichardi
ENSMOCG00000012018Lsm5100100.000ENSNLEG00000015268LSM5100100.000Nomascus_leucogenys
ENSMOCG00000012018Lsm582100.000ENSOPRG00000002443LSM5100100.000Ochotona_princeps
ENSMOCG00000012018Lsm5100100.000ENSODEG00000019072-100100.000Octodon_degus
ENSMOCG00000012018Lsm5100100.000ENSODEG00000008258-100100.000Octodon_degus
ENSMOCG00000012018Lsm58261.333ENSOANG00000014540-10061.333Ornithorhynchus_anatinus
ENSMOCG00000012018Lsm5100100.000ENSOCUG00000029043LSM5100100.000Oryctolagus_cuniculus
ENSMOCG00000012018Lsm510093.407ENSORLG00000027725lsm55893.407Oryzias_latipes
ENSMOCG00000012018Lsm59690.805ENSORLG00020003019lsm58690.805Oryzias_latipes_hni
ENSMOCG00000012018Lsm510093.407ENSORLG00015003338lsm510093.407Oryzias_latipes_hsok
ENSMOCG00000012018Lsm510092.308ENSOMEG00000001078lsm510092.308Oryzias_melastigma
ENSMOCG00000012018Lsm5100100.000ENSOGAG00000013892LSM5100100.000Otolemur_garnettii
ENSMOCG00000012018Lsm5100100.000ENSOARG00000006944LSM5100100.000Ovis_aries
ENSMOCG00000012018Lsm5100100.000ENSPPAG00000003697-100100.000Pan_paniscus
ENSMOCG00000012018Lsm5100100.000ENSPPRG00000002550LSM5100100.000Panthera_pardus
ENSMOCG00000012018Lsm5100100.000ENSPTIG00000015604LSM5100100.000Panthera_tigris_altaica
ENSMOCG00000012018Lsm5100100.000ENSPTRG00000019057LSM5100100.000Pan_troglodytes
ENSMOCG00000012018Lsm510083.516ENSPTRG00000049488-10085.714Pan_troglodytes
ENSMOCG00000012018Lsm59990.000ENSPANG00000032538-10090.000Papio_anubis
ENSMOCG00000012018Lsm510095.604ENSPANG00000033477-10095.604Papio_anubis
ENSMOCG00000012018Lsm5100100.000ENSPANG00000032179-100100.000Papio_anubis
ENSMOCG00000012018Lsm510094.505ENSPKIG00000011910lsm510094.505Paramormyrops_kingsleyae
ENSMOCG00000012018Lsm581100.000ENSPSIG00000014796LSM5100100.000Pelodiscus_sinensis
ENSMOCG00000012018Lsm57693.333ENSPMGG00000011699lsm510096.774Periophthalmus_magnuspinnatus
ENSMOCG00000012018Lsm5100100.000ENSPEMG00000019994-100100.000Peromyscus_maniculatus_bairdii
ENSMOCG00000012018Lsm510072.527ENSPEMG00000022375-10072.527Peromyscus_maniculatus_bairdii
ENSMOCG00000012018Lsm510094.505ENSPFOG00000001433lsm510094.505Poecilia_formosa
ENSMOCG00000012018Lsm510094.505ENSPLAG00000009665lsm510094.505Poecilia_latipinna
ENSMOCG00000012018Lsm510094.505ENSPMEG00000022265lsm510094.505Poecilia_mexicana
ENSMOCG00000012018Lsm57693.333ENSPREG00000022452lsm510096.774Poecilia_reticulata
ENSMOCG00000012018Lsm510096.703ENSPPYG00000017661LSM510096.703Pongo_abelii
ENSMOCG00000012018Lsm589100.000ENSPCAG00000013740LSM5100100.000Procavia_capensis
ENSMOCG00000012018Lsm5100100.000ENSPVAG00000009786LSM5100100.000Pteropus_vampyrus
ENSMOCG00000012018Lsm59695.402ENSPNYG00000022236lsm59995.402Pundamilia_nyererei
ENSMOCG00000012018Lsm510093.407ENSPNAG00000001887lsm510093.407Pygocentrus_nattereri
ENSMOCG00000012018Lsm5100100.000ENSRNOG00000042126Lsm5100100.000Rattus_norvegicus
ENSMOCG00000012018Lsm510095.652ENSRNOG00000027305AABR07065089.110095.652Rattus_norvegicus
ENSMOCG00000012018Lsm5100100.000ENSRBIG00000030714-100100.000Rhinopithecus_bieti
ENSMOCG00000012018Lsm5100100.000ENSRBIG00000030340-100100.000Rhinopithecus_bieti
ENSMOCG00000012018Lsm5100100.000ENSRBIG00000027803-100100.000Rhinopithecus_bieti
ENSMOCG00000012018Lsm510098.901ENSRBIG00000024431-10098.901Rhinopithecus_bieti
ENSMOCG00000012018Lsm5100100.000ENSRROG00000004655-100100.000Rhinopithecus_roxellana
ENSMOCG00000012018Lsm5100100.000ENSRROG00000023884-100100.000Rhinopithecus_roxellana
ENSMOCG00000012018Lsm5100100.000ENSRROG00000042782-100100.000Rhinopithecus_roxellana
ENSMOCG00000012018Lsm58551.220YER146W-8851.220Saccharomyces_cerevisiae
ENSMOCG00000012018Lsm510097.802ENSSBOG00000019124-10097.802Saimiri_boliviensis_boliviensis
ENSMOCG00000012018Lsm510078.022ENSSBOG00000034794-10078.022Saimiri_boliviensis_boliviensis
ENSMOCG00000012018Lsm5100100.000ENSSBOG00000012312LSM5100100.000Saimiri_boliviensis_boliviensis
ENSMOCG00000012018Lsm510094.505ENSSFOG00015010099lsm510094.505Scleropages_formosus
ENSMOCG00000012018Lsm510094.915ENSSMAG00000007895lsm510094.915Scophthalmus_maximus
ENSMOCG00000012018Lsm57693.333ENSSDUG00000010762lsm510096.774Seriola_dumerili
ENSMOCG00000012018Lsm510094.505ENSSLDG00000025242lsm510094.505Seriola_lalandi_dorsalis
ENSMOCG00000012018Lsm58678.205ENSSLDG00000008014-9378.205Seriola_lalandi_dorsalis
ENSMOCG00000012018Lsm58097.872ENSSARG00000003330LSM510071.429Sorex_araneus
ENSMOCG00000012018Lsm510097.802ENSSPUG00000002690LSM510098.387Sphenodon_punctatus
ENSMOCG00000012018Lsm510094.915ENSSPAG00000005435lsm510094.915Stegastes_partitus
ENSMOCG00000012018Lsm5100100.000ENSSSCG00000026064-100100.000Sus_scrofa
ENSMOCG00000012018Lsm58091.489ENSSSCG00000029661-9688.406Sus_scrofa
ENSMOCG00000012018Lsm510096.703ENSTGUG00000017539LSM510096.703Taeniopygia_guttata
ENSMOCG00000012018Lsm58687.952ENSTRUG00000017749lsm56487.952Takifugu_rubripes
ENSMOCG00000012018Lsm59695.402ENSTNIG00000008695lsm59995.402Tetraodon_nigroviridis
ENSMOCG00000012018Lsm5100100.000ENSTBEG00000004876LSM5100100.000Tupaia_belangeri
ENSMOCG00000012018Lsm5100100.000ENSTTRG00000004237LSM5100100.000Tursiops_truncatus
ENSMOCG00000012018Lsm59785.965ENSUAMG00000009786LSM56892.308Ursus_americanus
ENSMOCG00000012018Lsm510098.901ENSUMAG00000002625LSM56598.901Ursus_maritimus
ENSMOCG00000012018Lsm5100100.000ENSVPAG00000009985LSM5100100.000Vicugna_pacos
ENSMOCG00000012018Lsm5100100.000ENSVVUG00000021311LSM5100100.000Vulpes_vulpes
ENSMOCG00000012018Lsm59095.122ENSXETG00000026465lsm510095.122Xenopus_tropicalis
ENSMOCG00000012018Lsm57693.333ENSXCOG00000015348lsm510096.774Xiphophorus_couchianus
ENSMOCG00000012018Lsm510094.505ENSXMAG00000029988lsm510094.505Xiphophorus_maculatus

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