EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMOCG00000014040 (Gene tree)
Gene ID: 101997712
Gene Symbol: Safb
Alias: 3110021E02Rik|5330423C17Rik|SAFB1
Full Name: scaffold attachment factor B
Gene Type: protein_coding
Species: Microtus_ochrogaster
Status: putative
Strand: Plus strand
Length: 27725 bases
Position: chrJH996528.1:283119-310843
Accession: 101997712
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMOCP00000014596	RRM_5	PF13893.6	3.2e-06	1	1
ENSMOCP00000014596	RRM_1	PF00076.22	1.5e-12	1	1
ENSMOCP00000014596	SAP	PF02037.27	8.8e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMOCT00000018356	-	2817	XM_005371086	ENSMOCP00000014596	938 (aa)	XP_005371143	-

Gene Model

Click here to download ENSMOCG00000014040's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000014040's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMOCG00000014040	Safb	100	84.026	ENSG00000160633	SAFB	100	84.026	Homo_sapiens
ENSMOCG00000014040	Safb	100	83.741	ENSAMEG00000012254	SAFB	98	83.969	Ailuropoda_melanoleuca
ENSMOCG00000014040	Safb	50	53.165	ENSAOCG00000006308	safb	67	41.335	Amphiprion_ocellaris
ENSMOCG00000014040	Safb	90	58.933	ENSAPLG00000006355	-	65	54.467	Anas_platyrhynchos
ENSMOCG00000014040	Safb	94	61.305	ENSAPLG00000005780	-	100	59.685	Anas_platyrhynchos
ENSMOCG00000014040	Safb	100	83.919	ENSANAG00000028821	SAFB	100	83.919	Aotus_nancymaae
ENSMOCG00000014040	Safb	100	80.511	ENSBTAG00000007875	SAFB	100	80.511	Bos_taurus
ENSMOCG00000014040	Safb	81	86.570	ENSCJAG00000017081	SAFB	100	89.963	Callithrix_jacchus
ENSMOCG00000014040	Safb	100	84.558	ENSCAFG00000018803	SAFB	87	84.558	Canis_familiaris
ENSMOCG00000014040	Safb	100	84.558	ENSCAFG00020018943	SAFB	100	84.558	Canis_lupus_dingo
ENSMOCG00000014040	Safb	100	79.872	ENSCHIG00000007262	SAFB	100	79.872	Capra_hircus
ENSMOCG00000014040	Safb	57	75.468	ENSTSYG00000001851	-	100	68.852	Carlito_syrichta
ENSMOCG00000014040	Safb	93	79.397	ENSCAPG00000012121	SAFB	100	80.066	Cavia_aperea
ENSMOCG00000014040	Safb	100	84.583	ENSCPOG00000026322	SAFB	100	84.372	Cavia_porcellus
ENSMOCG00000014040	Safb	100	83.936	ENSCCAG00000020193	SAFB	100	83.511	Cebus_capucinus
ENSMOCG00000014040	Safb	100	83.919	ENSCATG00000029994	SAFB	100	83.919	Cercocebus_atys
ENSMOCG00000014040	Safb	100	86.002	ENSCLAG00000007734	SAFB	100	86.108	Chinchilla_lanigera
ENSMOCG00000014040	Safb	100	83.813	ENSCSAG00000009949	SAFB	100	83.813	Chlorocebus_sabaeus
ENSMOCG00000014040	Safb	87	97.619	ENSCHOG00000003208	SAFB	93	97.619	Choloepus_hoffmanni
ENSMOCG00000014040	Safb	91	57.616	ENSCPBG00000010936	-	63	54.437	Chrysemys_picta_bellii
ENSMOCG00000014040	Safb	92	60.780	ENSCPBG00000010928	-	64	55.694	Chrysemys_picta_bellii
ENSMOCG00000014040	Safb	100	78.594	ENSCANG00000019754	-	100	78.594	Colobus_angolensis_palliatus
ENSMOCG00000014040	Safb	96	92.040	ENSCANG00000004774	-	99	92.040	Colobus_angolensis_palliatus
ENSMOCG00000014040	Safb	100	96.170	ENSCGRG00001002254	Safb	100	96.170	Cricetulus_griseus_chok1gshd
ENSMOCG00000014040	Safb	92	92.117	ENSCGRG00000011529	Safb	97	92.117	Cricetulus_griseus_crigri
ENSMOCG00000014040	Safb	94	39.278	ENSCSEG00000019870	safb	65	37.541	Cynoglossus_semilaevis
ENSMOCG00000014040	Safb	73	54.331	ENSCVAG00000002226	safb	50	54.545	Cyprinodon_variegatus
ENSMOCG00000014040	Safb	89	41.980	ENSDARG00000020467	safb	60	60.833	Danio_rerio
ENSMOCG00000014040	Safb	100	82.447	ENSDNOG00000015746	SAFB	95	80.798	Dasypus_novemcinctus
ENSMOCG00000014040	Safb	100	80.042	ENSDORG00000016200	Safb	100	79.557	Dipodomys_ordii
ENSMOCG00000014040	Safb	74	85.000	ENSETEG00000018679	SAFB	78	85.000	Echinops_telfairi
ENSMOCG00000014040	Safb	100	82.839	ENSEASG00005023019	SAFB	100	82.097	Equus_asinus_asinus
ENSMOCG00000014040	Safb	100	84.345	ENSECAG00000018659	SAFB	89	84.452	Equus_caballus
ENSMOCG00000014040	Safb	96	40.721	ENSELUG00000022327	safb	57	56.452	Esox_lucius
ENSMOCG00000014040	Safb	100	84.968	ENSFCAG00000011835	SAFB	100	84.968	Felis_catus
ENSMOCG00000014040	Safb	91	54.264	ENSFALG00000013881	-	64	54.017	Ficedula_albicollis
ENSMOCG00000014040	Safb	100	61.660	ENSFALG00000013882	-	89	60.954	Ficedula_albicollis
ENSMOCG00000014040	Safb	100	76.000	ENSFDAG00000020306	SAFB	99	82.288	Fukomys_damarensis
ENSMOCG00000014040	Safb	100	61.474	ENSGALG00000013365	-	97	60.761	Gallus_gallus
ENSMOCG00000014040	Safb	96	59.177	ENSGAGG00000008424	-	67	56.006	Gopherus_agassizii
ENSMOCG00000014040	Safb	100	83.813	ENSGGOG00000015109	SAFB	100	83.813	Gorilla_gorilla
ENSMOCG00000014040	Safb	100	86.383	ENSHGLG00000015883	SAFB	100	86.383	Heterocephalus_glaber_female
ENSMOCG00000014040	Safb	76	43.110	ENSHCOG00000001705	safb	51	52.308	Hippocampus_comes
ENSMOCG00000014040	Safb	95	45.326	ENSIPUG00000024869	safb2	63	45.351	Ictalurus_punctatus
ENSMOCG00000014040	Safb	93	86.971	ENSSTOG00000002783	SAFB	100	86.971	Ictidomys_tridecemlineatus
ENSMOCG00000014040	Safb	100	87.818	ENSJJAG00000009021	Safb	98	88.913	Jaculus_jaculus
ENSMOCG00000014040	Safb	65	47.196	ENSLACG00000018090	SAFB	66	48.670	Latimeria_chalumnae
ENSMOCG00000014040	Safb	97	45.540	ENSLOCG00000003613	safb	74	45.277	Lepisosteus_oculatus
ENSMOCG00000014040	Safb	99	82.051	ENSLAFG00000003840	SAFB	100	80.876	Loxodonta_africana
ENSMOCG00000014040	Safb	100	83.830	ENSMFAG00000003885	SAFB	100	83.723	Macaca_fascicularis
ENSMOCG00000014040	Safb	100	83.919	ENSMMUG00000017970	SAFB	100	83.919	Macaca_mulatta
ENSMOCG00000014040	Safb	100	80.319	ENSMNEG00000035637	SAFB	100	79.406	Macaca_nemestrina
ENSMOCG00000014040	Safb	100	78.579	ENSMLEG00000038637	SAFB	100	77.230	Mandrillus_leucophaeus
ENSMOCG00000014040	Safb	89	57.093	ENSMGAG00000001051	-	97	58.475	Meleagris_gallopavo
ENSMOCG00000014040	Safb	97	59.521	ENSMGAG00000001101	-	100	58.497	Meleagris_gallopavo
ENSMOCG00000014040	Safb	52	98.148	ENSMAUG00000005013	Safb	100	98.148	Mesocricetus_auratus
ENSMOCG00000014040	Safb	100	81.170	ENSMICG00000008739	-	100	80.426	Microcebus_murinus
ENSMOCG00000014040	Safb	85	70.698	ENSMICG00000046795	-	98	86.170	Microcebus_murinus
ENSMOCG00000014040	Safb	100	68.783	ENSMODG00000001236	SAFB	98	69.723	Monodelphis_domestica
ENSMOCG00000014040	Safb	100	94.787	MGP_CAROLIEiJ_G0021780	Safb	100	94.787	Mus_caroli
ENSMOCG00000014040	Safb	100	94.362	ENSMUSG00000071054	Safb	100	94.894	Mus_musculus
ENSMOCG00000014040	Safb	100	94.368	MGP_PahariEiJ_G0020769	Safb	100	94.368	Mus_pahari
ENSMOCG00000014040	Safb	100	84.239	ENSMPUG00000006123	SAFB	94	84.452	Mustela_putorius_furo
ENSMOCG00000014040	Safb	100	83.387	ENSMLUG00000001081	SAFB	100	83.387	Myotis_lucifugus
ENSMOCG00000014040	Safb	100	88.123	ENSNGAG00000019882	Safb	100	88.123	Nannospalax_galili
ENSMOCG00000014040	Safb	99	80.952	ENSNLEG00000013551	SAFB	100	83.685	Nomascus_leucogenys
ENSMOCG00000014040	Safb	89	78.443	ENSOPRG00000011561	-	100	79.042	Ochotona_princeps
ENSMOCG00000014040	Safb	100	86.638	ENSODEG00000014838	SAFB	100	86.638	Octodon_degus
ENSMOCG00000014040	Safb	91	76.408	ENSOCUG00000014628	SAFB	63	77.615	Oryctolagus_cuniculus
ENSMOCG00000014040	Safb	78	48.767	ENSORLG00020000404	safb	51	54.472	Oryzias_latipes_hni
ENSMOCG00000014040	Safb	100	79.767	ENSOGAG00000027769	SAFB	100	79.555	Otolemur_garnettii
ENSMOCG00000014040	Safb	78	73.234	ENSOARG00000007856	-	100	72.962	Ovis_aries
ENSMOCG00000014040	Safb	100	77.103	ENSOARG00000007662	-	100	75.186	Ovis_aries
ENSMOCG00000014040	Safb	100	83.830	ENSPPAG00000035129	SAFB	100	83.723	Pan_paniscus
ENSMOCG00000014040	Safb	100	84.968	ENSPPRG00000017197	SAFB	100	84.968	Panthera_pardus
ENSMOCG00000014040	Safb	100	83.830	ENSPTRG00000010335	SAFB	100	83.723	Pan_troglodytes
ENSMOCG00000014040	Safb	100	83.723	ENSPANG00000007770	SAFB	100	83.617	Papio_anubis
ENSMOCG00000014040	Safb	100	58.599	ENSPSIG00000011679	-	64	56.293	Pelodiscus_sinensis
ENSMOCG00000014040	Safb	99	58.187	ENSPSIG00000009367	-	63	55.878	Pelodiscus_sinensis
ENSMOCG00000014040	Safb	100	96.375	ENSPEMG00000020428	Safb	100	96.375	Peromyscus_maniculatus_bairdii
ENSMOCG00000014040	Safb	57	78.967	ENSPCIG00000009504	-	99	79.359	Phascolarctos_cinereus
ENSMOCG00000014040	Safb	100	84.026	ENSPPYG00000009428	SAFB	100	84.026	Pongo_abelii
ENSMOCG00000014040	Safb	100	78.275	ENSPCAG00000006475	SAFB	100	78.168	Procavia_capensis
ENSMOCG00000014040	Safb	100	77.306	ENSPCOG00000014090	SAFB	100	75.373	Propithecus_coquereli
ENSMOCG00000014040	Safb	100	77.316	ENSPVAG00000004913	SAFB	100	77.636	Pteropus_vampyrus
ENSMOCG00000014040	Safb	100	93.213	ENSRNOG00000050543	Safb	100	93.319	Rattus_norvegicus
ENSMOCG00000014040	Safb	97	79.851	ENSRBIG00000042509	SAFB	100	76.978	Rhinopithecus_bieti
ENSMOCG00000014040	Safb	100	83.830	ENSRROG00000029278	SAFB	100	83.723	Rhinopithecus_roxellana
ENSMOCG00000014040	Safb	100	84.026	ENSSBOG00000026291	SAFB	100	84.026	Saimiri_boliviensis_boliviensis
ENSMOCG00000014040	Safb	96	42.813	ENSSFOG00015008156	safb	65	44.427	Scleropages_formosus
ENSMOCG00000014040	Safb	93	78.702	ENSSARG00000010475	SAFB	100	78.588	Sorex_araneus
ENSMOCG00000014040	Safb	59	50.090	ENSSPUG00000009747	-	67	49.726	Sphenodon_punctatus
ENSMOCG00000014040	Safb	54	49.534	ENSSPUG00000009820	-	64	51.481	Sphenodon_punctatus
ENSMOCG00000014040	Safb	100	83.053	ENSSSCG00000013522	SAFB	99	82.854	Sus_scrofa
ENSMOCG00000014040	Safb	96	60.656	ENSTGUG00000000502	-	97	60.517	Taeniopygia_guttata
ENSMOCG00000014040	Safb	75	86.364	ENSTBEG00000013124	-	66	89.394	Tupaia_belangeri
ENSMOCG00000014040	Safb	92	95.238	ENSTTRG00000013588	SAFB	92	95.238	Tursiops_truncatus
ENSMOCG00000014040	Safb	79	82.933	ENSUAMG00000024543	SAFB	99	82.933	Ursus_americanus
ENSMOCG00000014040	Safb	83	92.199	ENSUMAG00000009734	SAFB	88	92.199	Ursus_maritimus
ENSMOCG00000014040	Safb	72	90.769	ENSVPAG00000012043	SAFB	78	90.769	Vicugna_pacos
ENSMOCG00000014040	Safb	100	84.665	ENSVVUG00000013720	SAFB	87	84.665	Vulpes_vulpes
ENSMOCG00000014040	Safb	66	47.619	ENSXETG00000008755	safb	64	67.045	Xenopus_tropicalis