EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMOCG00000014812 (Gene tree)
Gene ID: 101999356
Gene Symbol: Hfm1
Alias: A330009G12Rik|LOC381663|Mer3|Sec63d1
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Microtus_ochrogaster
Status: putative
Strand: Minus strand
Length: 82802 bases
Position: chrLG1:56230213-56313014
Accession: 101999356
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMOCP00000015698	ResIII	PF04851.15	1.7e-11	1	1
ENSMOCP00000015698	DEAD	PF00270.29	9.5e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMOCT00000019470	-	4340	XM_005359638	ENSMOCP00000015698	1430 (aa)	XP_005359695	UPI00038BF8A8

Gene Model

Click here to download ENSMOCG00000014812's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000014812's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMOCG00000014812	Hfm1	59	31.840	ENSMOCG00000011814	Snrnp200	76	31.840
ENSMOCG00000014812	Hfm1	50	36.600	ENSMOCG00000004549	Ascc3	61	36.600

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMOCG00000014812	Hfm1	100	76.319	ENSG00000162669	HFM1	100	76.319	Homo_sapiens
ENSMOCG00000014812	Hfm1	58	64.910	ENSAPOG00000005304	hfm1	94	64.910	Acanthochromis_polyacanthus
ENSMOCG00000014812	Hfm1	100	75.261	ENSAMEG00000000432	HFM1	100	75.261	Ailuropoda_melanoleuca
ENSMOCG00000014812	Hfm1	71	59.024	ENSACIG00000021553	hfm1	91	59.024	Amphilophus_citrinellus
ENSMOCG00000014812	Hfm1	58	65.186	ENSAOCG00000022839	hfm1	96	67.424	Amphiprion_ocellaris
ENSMOCG00000014812	Hfm1	58	65.066	ENSAPEG00000014316	hfm1	96	67.722	Amphiprion_percula
ENSMOCG00000014812	Hfm1	71	60.665	ENSATEG00000019181	hfm1	84	59.649	Anabas_testudineus
ENSMOCG00000014812	Hfm1	100	56.646	ENSAPLG00000013639	HFM1	100	56.821	Anas_platyrhynchos
ENSMOCG00000014812	Hfm1	100	73.819	ENSANAG00000029513	HFM1	100	73.819	Aotus_nancymaae
ENSMOCG00000014812	Hfm1	65	62.191	ENSACLG00000009033	hfm1	97	64.081	Astatotilapia_calliptera
ENSMOCG00000014812	Hfm1	73	60.485	ENSAMXG00000006108	hfm1	73	60.485	Astyanax_mexicanus
ENSMOCG00000014812	Hfm1	100	74.375	ENSBTAG00000020856	HFM1	100	74.375	Bos_taurus
ENSMOCG00000014812	Hfm1	100	75.174	ENSCJAG00000001843	HFM1	100	75.174	Callithrix_jacchus
ENSMOCG00000014812	Hfm1	100	75.191	ENSCAFG00000020187	HFM1	100	75.191	Canis_familiaris
ENSMOCG00000014812	Hfm1	100	74.653	ENSTSYG00000014250	HFM1	100	74.653	Carlito_syrichta
ENSMOCG00000014812	Hfm1	99	72.892	ENSCPOG00000007421	HFM1	99	72.892	Cavia_porcellus
ENSMOCG00000014812	Hfm1	100	74.757	ENSCCAG00000033206	HFM1	100	74.757	Cebus_capucinus
ENSMOCG00000014812	Hfm1	100	75.452	ENSCATG00000030987	HFM1	100	75.452	Cercocebus_atys
ENSMOCG00000014812	Hfm1	100	72.635	ENSCLAG00000005173	HFM1	99	72.635	Chinchilla_lanigera
ENSMOCG00000014812	Hfm1	69	85.526	ENSCHOG00000011824	-	77	85.526	Choloepus_hoffmanni
ENSMOCG00000014812	Hfm1	100	82.451	ENSCGRG00001016995	Hfm1	100	82.451	Cricetulus_griseus_chok1gshd
ENSMOCG00000014812	Hfm1	100	86.653	ENSCGRG00000017181	Hfm1	100	86.653	Cricetulus_griseus_crigri
ENSMOCG00000014812	Hfm1	71	57.156	ENSCSEG00000017659	hfm1	94	57.622	Cynoglossus_semilaevis
ENSMOCG00000014812	Hfm1	50	67.416	ENSCVAG00000005075	hfm1	86	67.416	Cyprinodon_variegatus
ENSMOCG00000014812	Hfm1	76	54.504	ENSDARG00000104288	hfm1	96	54.504	Danio_rerio
ENSMOCG00000014812	Hfm1	100	70.620	ENSDNOG00000004776	HFM1	100	70.620	Dasypus_novemcinctus
ENSMOCG00000014812	Hfm1	100	72.490	ENSDORG00000014661	Hfm1	100	72.490	Dipodomys_ordii
ENSMOCG00000014812	Hfm1	71	80.493	ENSEASG00005015424	HFM1	97	80.493	Equus_asinus_asinus
ENSMOCG00000014812	Hfm1	100	73.131	ENSECAG00000024039	HFM1	100	73.131	Equus_caballus
ENSMOCG00000014812	Hfm1	63	65.567	ENSELUG00000018944	hfm1	97	65.567	Esox_lucius
ENSMOCG00000014812	Hfm1	100	75.972	ENSFCAG00000029116	HFM1	100	75.972	Felis_catus
ENSMOCG00000014812	Hfm1	100	55.908	ENSFALG00000001781	HFM1	100	55.833	Ficedula_albicollis
ENSMOCG00000014812	Hfm1	100	71.957	ENSFDAG00000020816	HFM1	100	71.957	Fukomys_damarensis
ENSMOCG00000014812	Hfm1	66	59.252	ENSGMOG00000017436	hfm1	99	59.437	Gadus_morhua
ENSMOCG00000014812	Hfm1	71	59.634	ENSGAFG00000018093	hfm1	94	64.636	Gambusia_affinis
ENSMOCG00000014812	Hfm1	67	60.436	ENSGACG00000015686	hfm1	99	60.669	Gasterosteus_aculeatus
ENSMOCG00000014812	Hfm1	100	76.287	ENSGGOG00000038524	HFM1	100	76.287	Gorilla_gorilla
ENSMOCG00000014812	Hfm1	65	63.050	ENSHBUG00000007309	hfm1	95	59.510	Haplochromis_burtoni
ENSMOCG00000014812	Hfm1	57	62.868	ENSHCOG00000019632	hfm1	97	62.868	Hippocampus_comes
ENSMOCG00000014812	Hfm1	66	63.665	ENSIPUG00000017020	hfm1	92	65.114	Ictalurus_punctatus
ENSMOCG00000014812	Hfm1	100	74.304	ENSJJAG00000017198	Hfm1	100	74.304	Jaculus_jaculus
ENSMOCG00000014812	Hfm1	62	61.641	ENSKMAG00000002282	hfm1	90	61.641	Kryptolebias_marmoratus
ENSMOCG00000014812	Hfm1	71	58.049	ENSLBEG00000006759	hfm1	96	63.723	Labrus_bergylta
ENSMOCG00000014812	Hfm1	67	67.425	ENSLACG00000010698	HFM1	100	63.594	Latimeria_chalumnae
ENSMOCG00000014812	Hfm1	74	61.781	ENSLOCG00000004931	hfm1	99	61.688	Lepisosteus_oculatus
ENSMOCG00000014812	Hfm1	52	83.445	ENSLAFG00000015903	-	99	83.445	Loxodonta_africana
ENSMOCG00000014812	Hfm1	100	72.992	ENSMFAG00000003649	HFM1	100	72.992	Macaca_fascicularis
ENSMOCG00000014812	Hfm1	100	75.313	ENSMMUG00000006819	HFM1	100	75.313	Macaca_mulatta
ENSMOCG00000014812	Hfm1	58	65.054	ENSMAMG00000004623	hfm1	97	65.054	Mastacembelus_armatus
ENSMOCG00000014812	Hfm1	65	62.191	ENSMZEG00005004679	hfm1	97	64.081	Maylandia_zebra
ENSMOCG00000014812	Hfm1	54	76.166	ENSMGAG00000008437	HFM1	96	76.166	Meleagris_gallopavo
ENSMOCG00000014812	Hfm1	100	86.221	ENSMAUG00000018858	Hfm1	100	86.221	Mesocricetus_auratus
ENSMOCG00000014812	Hfm1	100	75.678	ENSMICG00000037935	HFM1	100	75.678	Microcebus_murinus
ENSMOCG00000014812	Hfm1	62	62.668	ENSMMOG00000006148	hfm1	96	63.457	Mola_mola
ENSMOCG00000014812	Hfm1	65	62.580	ENSMALG00000002401	hfm1	95	64.923	Monopterus_albus
ENSMOCG00000014812	Hfm1	95	78.677	MGP_CAROLIEiJ_G0027496	Hfm1	100	78.677	Mus_caroli
ENSMOCG00000014812	Hfm1	100	82.578	ENSMUSG00000043410	Hfm1	100	82.578	Mus_musculus
ENSMOCG00000014812	Hfm1	100	81.882	MGP_PahariEiJ_G0017268	Hfm1	100	82.021	Mus_pahari
ENSMOCG00000014812	Hfm1	100	82.160	MGP_SPRETEiJ_G0028495	Hfm1	100	82.160	Mus_spretus
ENSMOCG00000014812	Hfm1	100	72.593	ENSMPUG00000004594	HFM1	100	72.593	Mustela_putorius_furo
ENSMOCG00000014812	Hfm1	100	73.509	ENSMLUG00000010200	HFM1	100	73.509	Myotis_lucifugus
ENSMOCG00000014812	Hfm1	70	55.980	ENSNBRG00000002910	hfm1	97	63.956	Neolamprologus_brichardi
ENSMOCG00000014812	Hfm1	100	72.834	ENSNLEG00000010285	HFM1	100	72.834	Nomascus_leucogenys
ENSMOCG00000014812	Hfm1	84	66.667	ENSMEUG00000015788	HFM1	84	66.667	Notamacropus_eugenii
ENSMOCG00000014812	Hfm1	84	73.077	ENSOPRG00000013916	HFM1	84	73.077	Ochotona_princeps
ENSMOCG00000014812	Hfm1	72	60.832	ENSONIG00000010590	hfm1	99	60.707	Oreochromis_niloticus
ENSMOCG00000014812	Hfm1	57	64.039	ENSORLG00000026844	hfm1	99	64.039	Oryzias_latipes
ENSMOCG00000014812	Hfm1	68	55.282	ENSORLG00020002951	hfm1	77	55.282	Oryzias_latipes_hni
ENSMOCG00000014812	Hfm1	75	55.971	ENSOMEG00000016474	hfm1	77	55.882	Oryzias_melastigma
ENSMOCG00000014812	Hfm1	85	78.303	ENSOGAG00000032369	HFM1	99	78.343	Otolemur_garnettii
ENSMOCG00000014812	Hfm1	100	74.670	ENSOARG00000015812	HFM1	100	74.670	Ovis_aries
ENSMOCG00000014812	Hfm1	92	78.222	ENSPPAG00000024582	HFM1	100	78.222	Pan_paniscus
ENSMOCG00000014812	Hfm1	100	76.250	ENSPPRG00000003270	HFM1	100	76.250	Panthera_pardus
ENSMOCG00000014812	Hfm1	100	76.042	ENSPTIG00000018881	HFM1	100	76.042	Panthera_tigris_altaica
ENSMOCG00000014812	Hfm1	100	76.217	ENSPTRG00000000948	HFM1	100	76.217	Pan_troglodytes
ENSMOCG00000014812	Hfm1	100	75.522	ENSPANG00000009838	HFM1	100	75.522	Papio_anubis
ENSMOCG00000014812	Hfm1	62	65.917	ENSPKIG00000003810	hfm1	95	66.949	Paramormyrops_kingsleyae
ENSMOCG00000014812	Hfm1	58	64.891	ENSPMGG00000011059	hfm1	100	64.891	Periophthalmus_magnuspinnatus
ENSMOCG00000014812	Hfm1	100	87.317	ENSPEMG00000022852	Hfm1	100	87.317	Peromyscus_maniculatus_bairdii
ENSMOCG00000014812	Hfm1	100	62.575	ENSPCIG00000014233	HFM1	100	62.575	Phascolarctos_cinereus
ENSMOCG00000014812	Hfm1	71	60.324	ENSPFOG00000017194	hfm1	100	60.456	Poecilia_formosa
ENSMOCG00000014812	Hfm1	71	61.479	ENSPLAG00000000571	hfm1	92	61.187	Poecilia_latipinna
ENSMOCG00000014812	Hfm1	71	61.776	ENSPMEG00000019475	hfm1	93	61.486	Poecilia_mexicana
ENSMOCG00000014812	Hfm1	71	60.840	ENSPREG00000007803	hfm1	97	62.471	Poecilia_reticulata
ENSMOCG00000014812	Hfm1	100	75.800	ENSPPYG00000001163	HFM1	100	75.800	Pongo_abelii
ENSMOCG00000014812	Hfm1	70	71.392	ENSPCAG00000004289	-	70	71.392	Procavia_capensis
ENSMOCG00000014812	Hfm1	100	66.875	ENSPVAG00000009713	HFM1	100	66.875	Pteropus_vampyrus
ENSMOCG00000014812	Hfm1	65	62.084	ENSPNYG00000001795	hfm1	97	64.081	Pundamilia_nyererei
ENSMOCG00000014812	Hfm1	59	65.734	ENSPNAG00000010865	hfm1	85	65.734	Pygocentrus_nattereri
ENSMOCG00000014812	Hfm1	100	81.045	ENSRNOG00000023299	Hfm1	100	81.045	Rattus_norvegicus
ENSMOCG00000014812	Hfm1	100	75.591	ENSRROG00000045569	HFM1	100	75.591	Rhinopithecus_roxellana
ENSMOCG00000014812	Hfm1	100	73.227	ENSSBOG00000027456	HFM1	100	73.227	Saimiri_boliviensis_boliviensis
ENSMOCG00000014812	Hfm1	59	66.358	ENSSHAG00000014616	-	98	66.243	Sarcophilus_harrisii
ENSMOCG00000014812	Hfm1	68	62.948	ENSSFOG00015020129	hfm1	66	63.153	Scleropages_formosus
ENSMOCG00000014812	Hfm1	62	64.318	ENSSMAG00000006907	hfm1	87	64.318	Scophthalmus_maximus
ENSMOCG00000014812	Hfm1	58	65.860	ENSSDUG00000011424	hfm1	93	65.860	Seriola_dumerili
ENSMOCG00000014812	Hfm1	58	65.983	ENSSLDG00000016386	hfm1	92	65.983	Seriola_lalandi_dorsalis
ENSMOCG00000014812	Hfm1	69	57.937	ENSSPAG00000001023	hfm1	94	65.546	Stegastes_partitus
ENSMOCG00000014812	Hfm1	100	71.785	ENSSSCG00000006912	HFM1	98	74.052	Sus_scrofa
ENSMOCG00000014812	Hfm1	67	72.832	ENSTGUG00000006172	HFM1	99	73.235	Taeniopygia_guttata
ENSMOCG00000014812	Hfm1	100	72.272	ENSTTRG00000013933	HFM1	100	72.272	Tursiops_truncatus
ENSMOCG00000014812	Hfm1	93	75.843	ENSVPAG00000011331	HFM1	93	75.843	Vicugna_pacos
ENSMOCG00000014812	Hfm1	71	77.703	ENSVVUG00000020760	HFM1	99	77.220	Vulpes_vulpes
ENSMOCG00000014812	Hfm1	58	65.375	ENSXMAG00000004178	hfm1	92	65.375	Xiphophorus_maculatus