EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMOCG00000015239 (Gene tree)
Gene ID: 101991972
Gene Symbol: Zc3hc1
Alias: 1110054L24Rik|HSPC216|Nipa
Full Name: zinc finger C3HC-type containing 1
Gene Type: protein_coding
Species: Microtus_ochrogaster
Status: putative
Strand: Minus strand
Length: 21536 bases
Position: chrJH996434.1:6994060-7015595
Accession: 101991972
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMOCP00000016300	zf-C3HC	PF07967.13	4.7e-37	1	1
ENSMOCP00000016302	zf-C3HC	PF07967.13	5.8e-37	1	1
ENSMOCP00000016298	zf-C3HC	PF07967.13	6.2e-37	1	1
ENSMOCP00000016302	Rsm1	PF08600.10	1.3e-16	1	2
ENSMOCP00000016302	Rsm1	PF08600.10	1.3e-16	2	2
ENSMOCP00000016298	Rsm1	PF08600.10	1.5e-16	1	2
ENSMOCP00000016298	Rsm1	PF08600.10	1.5e-16	2	2
ENSMOCP00000016300	Rsm1	PF08600.10	1.9e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMOCT00000020079	-	1446	-	ENSMOCP00000016302	481 (aa)	-	-
ENSMOCT00000020077	-	1293	-	ENSMOCP00000016300	430 (aa)	-	-
ENSMOCT00000020075	-	1839	XM_005365771	ENSMOCP00000016298	501 (aa)	XP_005365828	UPI00038BD42D

Gene Model

Click here to download ENSMOCG00000015239's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000015239's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMOCG00000015239	Zc3hc1	99	86.228	ENSG00000091732	ZC3HC1	99	86.228	Homo_sapiens
ENSMOCG00000015239	Zc3hc1	94	46.567	ENSAPOG00000009078	zc3hc1	95	44.219	Acanthochromis_polyacanthus
ENSMOCG00000015239	Zc3hc1	100	85.119	ENSAMEG00000005425	ZC3HC1	100	85.119	Ailuropoda_melanoleuca
ENSMOCG00000015239	Zc3hc1	92	46.505	ENSACIG00000019513	zc3hc1	95	42.742	Amphilophus_citrinellus
ENSMOCG00000015239	Zc3hc1	94	47.164	ENSAOCG00000024310	zc3hc1	95	44.625	Amphiprion_ocellaris
ENSMOCG00000015239	Zc3hc1	94	47.164	ENSAPEG00000004907	zc3hc1	95	44.625	Amphiprion_percula
ENSMOCG00000015239	Zc3hc1	84	48.349	ENSATEG00000016898	zc3hc1	85	47.877	Anabas_testudineus
ENSMOCG00000015239	Zc3hc1	88	61.486	ENSAPLG00000003832	ZC3HC1	99	61.486	Anas_platyrhynchos
ENSMOCG00000015239	Zc3hc1	100	58.678	ENSACAG00000001638	ZC3HC1	95	62.680	Anolis_carolinensis
ENSMOCG00000015239	Zc3hc1	100	84.919	ENSANAG00000022213	ZC3HC1	100	84.919	Aotus_nancymaae
ENSMOCG00000015239	Zc3hc1	84	48.630	ENSACLG00000025033	zc3hc1	94	44.643	Astatotilapia_calliptera
ENSMOCG00000015239	Zc3hc1	93	46.526	ENSAMXG00000036792	zc3hc1	97	43.867	Astyanax_mexicanus
ENSMOCG00000015239	Zc3hc1	100	85.458	ENSBTAG00000011247	ZC3HC1	100	85.458	Bos_taurus
ENSMOCG00000015239	Zc3hc1	100	85.458	ENSCJAG00000010536	ZC3HC1	100	85.458	Callithrix_jacchus
ENSMOCG00000015239	Zc3hc1	100	87.649	ENSCAFG00000031850	-	100	87.649	Canis_familiaris
ENSMOCG00000015239	Zc3hc1	100	86.733	ENSCAFG00000001499	-	99	86.733	Canis_familiaris
ENSMOCG00000015239	Zc3hc1	100	87.251	ENSCAFG00000029401	-	99	87.251	Canis_familiaris
ENSMOCG00000015239	Zc3hc1	100	87.251	ENSCAFG00000028735	-	100	87.251	Canis_familiaris
ENSMOCG00000015239	Zc3hc1	100	87.450	ENSCAFG00020006829	-	100	87.450	Canis_lupus_dingo
ENSMOCG00000015239	Zc3hc1	100	85.714	ENSCAFG00020023333	-	100	85.714	Canis_lupus_dingo
ENSMOCG00000015239	Zc3hc1	100	79.324	ENSCHIG00000014103	ZC3HC1	100	79.084	Capra_hircus
ENSMOCG00000015239	Zc3hc1	100	84.118	ENSTSYG00000002843	ZC3HC1	100	83.665	Carlito_syrichta
ENSMOCG00000015239	Zc3hc1	89	64.912	ENSCAPG00000016300	ZC3HC1	100	65.487	Cavia_aperea
ENSMOCG00000015239	Zc3hc1	100	82.353	ENSCPOG00000014034	ZC3HC1	100	81.673	Cavia_porcellus
ENSMOCG00000015239	Zc3hc1	100	69.124	ENSCCAG00000020384	ZC3HC1	100	86.784	Cebus_capucinus
ENSMOCG00000015239	Zc3hc1	100	86.255	ENSCATG00000023130	ZC3HC1	100	86.255	Cercocebus_atys
ENSMOCG00000015239	Zc3hc1	100	71.053	ENSCLAG00000008260	ZC3HC1	100	59.761	Chinchilla_lanigera
ENSMOCG00000015239	Zc3hc1	73	86.066	ENSCSAG00000009881	ZC3HC1	97	86.066	Chlorocebus_sabaeus
ENSMOCG00000015239	Zc3hc1	90	84.479	ENSCHOG00000011846	ZC3HC1	99	84.479	Choloepus_hoffmanni
ENSMOCG00000015239	Zc3hc1	96	66.872	ENSCPBG00000017519	ZC3HC1	100	65.873	Chrysemys_picta_bellii
ENSMOCG00000015239	Zc3hc1	51	31.890	ENSCING00000004440	-	58	31.496	Ciona_intestinalis
ENSMOCG00000015239	Zc3hc1	100	86.056	ENSCANG00000029091	ZC3HC1	100	86.056	Colobus_angolensis_palliatus
ENSMOCG00000015239	Zc3hc1	100	93.214	ENSCGRG00001018805	Zc3hc1	100	93.214	Cricetulus_griseus_chok1gshd
ENSMOCG00000015239	Zc3hc1	100	92.016	ENSCGRG00000017114	Zc3hc1	100	92.016	Cricetulus_griseus_crigri
ENSMOCG00000015239	Zc3hc1	96	43.600	ENSCSEG00000009284	zc3hc1	94	43.400	Cynoglossus_semilaevis
ENSMOCG00000015239	Zc3hc1	93	47.256	ENSCVAG00000011566	zc3hc1	94	43.182	Cyprinodon_variegatus
ENSMOCG00000015239	Zc3hc1	94	50.613	ENSDARG00000062651	zc3hc1	95	48.665	Danio_rerio
ENSMOCG00000015239	Zc3hc1	100	83.466	ENSDNOG00000045016	ZC3HC1	100	83.466	Dasypus_novemcinctus
ENSMOCG00000015239	Zc3hc1	100	77.291	ENSDORG00000008697	Zc3hc1	100	77.291	Dipodomys_ordii
ENSMOCG00000015239	Zc3hc1	90	87.389	ENSEASG00005008789	ZC3HC1	97	87.389	Equus_asinus_asinus
ENSMOCG00000015239	Zc3hc1	100	85.487	ENSECAG00000017886	ZC3HC1	100	85.487	Equus_caballus
ENSMOCG00000015239	Zc3hc1	84	80.247	ENSEEUG00000003123	ZC3HC1	84	80.247	Erinaceus_europaeus
ENSMOCG00000015239	Zc3hc1	97	42.996	ENSELUG00000023168	zc3hc1	98	43.385	Esox_lucius
ENSMOCG00000015239	Zc3hc1	100	85.259	ENSFCAG00000010429	ZC3HC1	100	85.259	Felis_catus
ENSMOCG00000015239	Zc3hc1	90	60.600	ENSFALG00000005006	ZC3HC1	100	60.600	Ficedula_albicollis
ENSMOCG00000015239	Zc3hc1	100	82.271	ENSFDAG00000019897	ZC3HC1	100	82.271	Fukomys_damarensis
ENSMOCG00000015239	Zc3hc1	95	47.289	ENSFHEG00000020149	zc3hc1	99	42.775	Fundulus_heteroclitus
ENSMOCG00000015239	Zc3hc1	93	45.104	ENSGMOG00000002914	zc3hc1	95	41.856	Gadus_morhua
ENSMOCG00000015239	Zc3hc1	99	60.479	ENSGALG00000008003	ZC3HC1	99	60.479	Gallus_gallus
ENSMOCG00000015239	Zc3hc1	95	47.147	ENSGAFG00000016095	zc3hc1	96	43.952	Gambusia_affinis
ENSMOCG00000015239	Zc3hc1	93	46.526	ENSGACG00000019706	zc3hc1	94	44.239	Gasterosteus_aculeatus
ENSMOCG00000015239	Zc3hc1	77	67.766	ENSGAGG00000016106	ZC3HC1	100	67.766	Gopherus_agassizii
ENSMOCG00000015239	Zc3hc1	99	86.028	ENSGGOG00000015504	ZC3HC1	99	86.028	Gorilla_gorilla
ENSMOCG00000015239	Zc3hc1	93	46.364	ENSHBUG00000008347	zc3hc1	94	43.443	Haplochromis_burtoni
ENSMOCG00000015239	Zc3hc1	100	84.412	ENSHGLG00000005085	ZC3HC1	100	84.263	Heterocephalus_glaber_female
ENSMOCG00000015239	Zc3hc1	100	84.412	ENSHGLG00100011395	ZC3HC1	100	84.064	Heterocephalus_glaber_male
ENSMOCG00000015239	Zc3hc1	93	47.077	ENSHCOG00000014309	zc3hc1	95	43.505	Hippocampus_comes
ENSMOCG00000015239	Zc3hc1	100	85.657	ENSSTOG00000023599	-	100	85.657	Ictidomys_tridecemlineatus
ENSMOCG00000015239	Zc3hc1	93	49.085	ENSKMAG00000015315	zc3hc1	88	44.694	Kryptolebias_marmoratus
ENSMOCG00000015239	Zc3hc1	94	46.334	ENSLBEG00000017325	zc3hc1	95	42.685	Labrus_bergylta
ENSMOCG00000015239	Zc3hc1	82	54.768	ENSLACG00000013032	ZC3HC1	98	53.919	Latimeria_chalumnae
ENSMOCG00000015239	Zc3hc1	99	53.757	ENSLOCG00000015963	zc3hc1	99	51.181	Lepisosteus_oculatus
ENSMOCG00000015239	Zc3hc1	100	83.004	ENSLAFG00000001292	ZC3HC1	100	83.004	Loxodonta_africana
ENSMOCG00000015239	Zc3hc1	100	86.454	ENSMFAG00000030176	ZC3HC1	100	86.454	Macaca_fascicularis
ENSMOCG00000015239	Zc3hc1	100	85.383	ENSMMUG00000006155	ZC3HC1	100	85.383	Macaca_mulatta
ENSMOCG00000015239	Zc3hc1	100	86.653	ENSMNEG00000011833	ZC3HC1	100	86.792	Macaca_nemestrina
ENSMOCG00000015239	Zc3hc1	100	86.454	ENSMLEG00000027328	ZC3HC1	100	86.454	Mandrillus_leucophaeus
ENSMOCG00000015239	Zc3hc1	93	49.547	ENSMAMG00000010691	zc3hc1	95	45.766	Mastacembelus_armatus
ENSMOCG00000015239	Zc3hc1	93	46.061	ENSMZEG00005007142	zc3hc1	94	43.238	Maylandia_zebra
ENSMOCG00000015239	Zc3hc1	99	59.172	ENSMGAG00000002977	ZC3HC1	99	59.763	Meleagris_gallopavo
ENSMOCG00000015239	Zc3hc1	82	85.749	ENSMAUG00000017032	Zc3hc1	92	85.749	Mesocricetus_auratus
ENSMOCG00000015239	Zc3hc1	100	85.657	ENSMICG00000009167	ZC3HC1	100	85.657	Microcebus_murinus
ENSMOCG00000015239	Zc3hc1	86	43.016	ENSMMOG00000002204	zc3hc1	98	42.572	Mola_mola
ENSMOCG00000015239	Zc3hc1	100	62.308	ENSMODG00000014630	ZC3HC1	100	62.308	Monodelphis_domestica
ENSMOCG00000015239	Zc3hc1	93	46.552	ENSMALG00000014447	zc3hc1	95	44.828	Monopterus_albus
ENSMOCG00000015239	Zc3hc1	100	88.224	MGP_CAROLIEiJ_G0028183	Zc3hc1	100	88.224	Mus_caroli
ENSMOCG00000015239	Zc3hc1	100	88.623	ENSMUSG00000039130	Zc3hc1	100	88.623	Mus_musculus
ENSMOCG00000015239	Zc3hc1	100	82.036	MGP_PahariEiJ_G0021941	Zc3hc1	100	82.036	Mus_pahari
ENSMOCG00000015239	Zc3hc1	100	88.224	MGP_SPRETEiJ_G0029183	Zc3hc1	100	88.224	Mus_spretus
ENSMOCG00000015239	Zc3hc1	100	84.855	ENSMPUG00000005297	ZC3HC1	95	85.565	Mustela_putorius_furo
ENSMOCG00000015239	Zc3hc1	100	84.752	ENSMLUG00000000063	-	100	84.752	Myotis_lucifugus
ENSMOCG00000015239	Zc3hc1	66	82.445	ENSMLUG00000029228	-	99	79.472	Myotis_lucifugus
ENSMOCG00000015239	Zc3hc1	100	86.255	ENSNGAG00000019014	Zc3hc1	100	86.255	Nannospalax_galili
ENSMOCG00000015239	Zc3hc1	93	45.897	ENSNBRG00000004577	zc3hc1	94	42.798	Neolamprologus_brichardi
ENSMOCG00000015239	Zc3hc1	99	85.230	ENSNLEG00000012698	ZC3HC1	99	85.230	Nomascus_leucogenys
ENSMOCG00000015239	Zc3hc1	98	77.039	ENSMEUG00000011023	ZC3HC1	98	75.862	Notamacropus_eugenii
ENSMOCG00000015239	Zc3hc1	76	79.070	ENSOPRG00000007867	-	68	79.070	Ochotona_princeps
ENSMOCG00000015239	Zc3hc1	100	82.271	ENSODEG00000014604	ZC3HC1	100	82.271	Octodon_degus
ENSMOCG00000015239	Zc3hc1	93	46.201	ENSONIG00000011644	zc3hc1	94	43.326	Oreochromis_niloticus
ENSMOCG00000015239	Zc3hc1	90	66.379	ENSOANG00000011460	ZC3HC1	100	66.379	Ornithorhynchus_anatinus
ENSMOCG00000015239	Zc3hc1	100	83.090	ENSOCUG00000017137	ZC3HC1	100	82.178	Oryctolagus_cuniculus
ENSMOCG00000015239	Zc3hc1	94	48.060	ENSORLG00000014409	zc3hc1	94	44.332	Oryzias_latipes
ENSMOCG00000015239	Zc3hc1	94	47.761	ENSORLG00020015874	zc3hc1	94	45.161	Oryzias_latipes_hni
ENSMOCG00000015239	Zc3hc1	94	47.463	ENSORLG00015014641	zc3hc1	94	44.960	Oryzias_latipes_hsok
ENSMOCG00000015239	Zc3hc1	94	47.633	ENSOMEG00000020604	zc3hc1	94	44.676	Oryzias_melastigma
ENSMOCG00000015239	Zc3hc1	95	45.946	ENSOMEG00000000215	zc3hc1	94	45.946	Oryzias_melastigma
ENSMOCG00000015239	Zc3hc1	100	78.884	ENSOGAG00000026193	ZC3HC1	100	78.884	Otolemur_garnettii
ENSMOCG00000015239	Zc3hc1	100	85.743	ENSOARG00000004907	ZC3HC1	99	85.743	Ovis_aries
ENSMOCG00000015239	Zc3hc1	99	86.228	ENSPPAG00000043172	ZC3HC1	99	86.228	Pan_paniscus
ENSMOCG00000015239	Zc3hc1	100	84.462	ENSPPRG00000001004	ZC3HC1	100	84.462	Panthera_pardus
ENSMOCG00000015239	Zc3hc1	100	85.060	ENSPTIG00000007823	ZC3HC1	100	85.060	Panthera_tigris_altaica
ENSMOCG00000015239	Zc3hc1	99	86.028	ENSPTRG00000019685	ZC3HC1	99	86.028	Pan_troglodytes
ENSMOCG00000015239	Zc3hc1	100	85.383	ENSPANG00000014229	ZC3HC1	100	85.383	Papio_anubis
ENSMOCG00000015239	Zc3hc1	95	48.240	ENSPKIG00000007172	zc3hc1	95	47.010	Paramormyrops_kingsleyae
ENSMOCG00000015239	Zc3hc1	92	65.772	ENSPSIG00000016646	ZC3HC1	100	58.674	Pelodiscus_sinensis
ENSMOCG00000015239	Zc3hc1	94	42.686	ENSPMGG00000003548	zc3hc1	94	43.405	Periophthalmus_magnuspinnatus
ENSMOCG00000015239	Zc3hc1	100	91.816	ENSPEMG00000000514	Zc3hc1	100	91.816	Peromyscus_maniculatus_bairdii
ENSMOCG00000015239	Zc3hc1	99	72.255	ENSPCIG00000020619	ZC3HC1	100	75.578	Phascolarctos_cinereus
ENSMOCG00000015239	Zc3hc1	95	47.147	ENSPFOG00000003466	zc3hc1	96	43.952	Poecilia_formosa
ENSMOCG00000015239	Zc3hc1	95	46.847	ENSPLAG00000022211	zc3hc1	96	43.173	Poecilia_latipinna
ENSMOCG00000015239	Zc3hc1	95	47.147	ENSPMEG00000001458	zc3hc1	96	43.952	Poecilia_mexicana
ENSMOCG00000015239	Zc3hc1	95	47.147	ENSPREG00000004004	zc3hc1	96	43.636	Poecilia_reticulata
ENSMOCG00000015239	Zc3hc1	99	78.131	ENSPPYG00000017998	ZC3HC1	99	78.131	Pongo_abelii
ENSMOCG00000015239	Zc3hc1	92	80.000	ENSPCAG00000001182	ZC3HC1	100	80.000	Procavia_capensis
ENSMOCG00000015239	Zc3hc1	100	86.454	ENSPCOG00000017354	ZC3HC1	100	86.454	Propithecus_coquereli
ENSMOCG00000015239	Zc3hc1	100	79.681	ENSPVAG00000003195	ZC3HC1	100	79.681	Pteropus_vampyrus
ENSMOCG00000015239	Zc3hc1	93	46.061	ENSPNYG00000020692	zc3hc1	94	43.238	Pundamilia_nyererei
ENSMOCG00000015239	Zc3hc1	93	46.476	ENSPNAG00000020746	zc3hc1	95	45.168	Pygocentrus_nattereri
ENSMOCG00000015239	Zc3hc1	100	89.243	ENSRNOG00000010154	Zc3hc1	100	89.243	Rattus_norvegicus
ENSMOCG00000015239	Zc3hc1	90	86.534	ENSRBIG00000029409	ZC3HC1	100	86.534	Rhinopithecus_bieti
ENSMOCG00000015239	Zc3hc1	100	86.056	ENSRROG00000041831	ZC3HC1	100	86.056	Rhinopithecus_roxellana
ENSMOCG00000015239	Zc3hc1	88	83.934	ENSSBOG00000032787	ZC3HC1	100	83.934	Saimiri_boliviensis_boliviensis
ENSMOCG00000015239	Zc3hc1	92	74.624	ENSSHAG00000002529	ZC3HC1	100	74.624	Sarcophilus_harrisii
ENSMOCG00000015239	Zc3hc1	94	52.090	ENSSFOG00015003667	zc3hc1	91	49.897	Scleropages_formosus
ENSMOCG00000015239	Zc3hc1	95	46.866	ENSSMAG00000000647	zc3hc1	86	44.153	Scophthalmus_maximus
ENSMOCG00000015239	Zc3hc1	94	48.204	ENSSDUG00000004241	zc3hc1	93	45.325	Seriola_dumerili
ENSMOCG00000015239	Zc3hc1	94	47.214	ENSSLDG00000025056	zc3hc1	93	44.689	Seriola_lalandi_dorsalis
ENSMOCG00000015239	Zc3hc1	99	75.848	ENSSARG00000012013	ZC3HC1	99	75.848	Sorex_araneus
ENSMOCG00000015239	Zc3hc1	88	59.165	ENSSPUG00000000778	ZC3HC1	85	59.165	Sphenodon_punctatus
ENSMOCG00000015239	Zc3hc1	94	46.567	ENSSPAG00000020041	zc3hc1	95	44.625	Stegastes_partitus
ENSMOCG00000015239	Zc3hc1	100	85.857	ENSSSCG00000016565	ZC3HC1	100	85.861	Sus_scrofa
ENSMOCG00000015239	Zc3hc1	95	43.004	ENSTRUG00000020077	zc3hc1	94	42.827	Takifugu_rubripes
ENSMOCG00000015239	Zc3hc1	93	47.385	ENSTNIG00000007585	zc3hc1	99	43.093	Tetraodon_nigroviridis
ENSMOCG00000015239	Zc3hc1	99	74.451	ENSTBEG00000005216	ZC3HC1	99	74.451	Tupaia_belangeri
ENSMOCG00000015239	Zc3hc1	95	85.208	ENSTTRG00000008458	ZC3HC1	100	85.208	Tursiops_truncatus
ENSMOCG00000015239	Zc3hc1	100	85.857	ENSUAMG00000020249	ZC3HC1	100	85.857	Ursus_americanus
ENSMOCG00000015239	Zc3hc1	100	85.259	ENSUMAG00000009268	ZC3HC1	100	85.259	Ursus_maritimus
ENSMOCG00000015239	Zc3hc1	90	85.714	ENSVPAG00000010846	ZC3HC1	77	85.714	Vicugna_pacos
ENSMOCG00000015239	Zc3hc1	100	85.892	ENSVVUG00000012386	ZC3HC1	100	85.892	Vulpes_vulpes
ENSMOCG00000015239	Zc3hc1	93	53.829	ENSXETG00000033900	zc3hc1	94	53.829	Xenopus_tropicalis
ENSMOCG00000015239	Zc3hc1	96	42.828	ENSXCOG00000013570	zc3hc1	96	42.626	Xiphophorus_couchianus
ENSMOCG00000015239	Zc3hc1	85	48.966	ENSXMAG00000010979	zc3hc1	95	45.033	Xiphophorus_maculatus