EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMOCG00000015879 (Gene tree)
Gene ID: 101988236
Gene Symbol: Tnrc6c
Alias: 9930033H14Rik
Full Name: trinucleotide repeat containing 6C
Gene Type: protein_coding
Species: Microtus_ochrogaster
Status: putative
Strand: Plus strand
Length: 72977 bases
Position: chr7:80782195-80855171
Accession: 101988236
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMOCP00000017226	Ago_hook	PF10427.9	5.5e-24	1	1
ENSMOCP00000017220	Ago_hook	PF10427.9	6.2e-24	1	1
ENSMOCP00000017226	RRM_1	PF00076.22	0.00022	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMOCT00000021013	-	6415	-	ENSMOCP00000017226	1732 (aa)	-	-
ENSMOCT00000021007	-	5703	XM_005350798	ENSMOCP00000017220	1900 (aa)	XP_005350855	-

Gene Model

Click here to download ENSMOCG00000015879's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000015879's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMOCG00000015879	Tnrc6c	99	41.180	ENSMOCG00000000152	Tnrc6a	98	39.625
ENSMOCG00000015879	Tnrc6c	99	34.696	ENSMOCG00000020334	Tnrc6b	96	33.903

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMOCG00000015879	Tnrc6c	100	89.070	ENSG00000078687	TNRC6C	100	91.657	Homo_sapiens
ENSMOCG00000015879	Tnrc6c	77	55.103	ENSAPOG00000019749	tnrc6c1	98	49.333	Acanthochromis_polyacanthus
ENSMOCG00000015879	Tnrc6c	99	86.265	ENSAMEG00000013756	TNRC6C	99	86.366	Ailuropoda_melanoleuca
ENSMOCG00000015879	Tnrc6c	94	50.865	ENSACIG00000008075	tnrc6c1	98	51.811	Amphilophus_citrinellus
ENSMOCG00000015879	Tnrc6c	75	68.599	ENSAOCG00000023968	tnrc6c1	99	48.477	Amphiprion_ocellaris
ENSMOCG00000015879	Tnrc6c	77	54.526	ENSAPEG00000009020	tnrc6c1	99	48.732	Amphiprion_percula
ENSMOCG00000015879	Tnrc6c	100	83.398	ENSAPLG00000005456	TNRC6C	100	82.636	Anas_platyrhynchos
ENSMOCG00000015879	Tnrc6c	100	84.252	ENSACAG00000016198	TNRC6C	98	83.073	Anolis_carolinensis
ENSMOCG00000015879	Tnrc6c	100	88.559	ENSANAG00000021554	TNRC6C	100	91.297	Aotus_nancymaae
ENSMOCG00000015879	Tnrc6c	96	50.511	ENSACLG00000000424	tnrc6c1	98	50.474	Astatotilapia_calliptera
ENSMOCG00000015879	Tnrc6c	100	85.554	ENSBTAG00000018658	TNRC6C	100	87.929	Bos_taurus
ENSMOCG00000015879	Tnrc6c	100	88.895	ENSCJAG00000019431	TNRC6C	100	91.356	Callithrix_jacchus
ENSMOCG00000015879	Tnrc6c	99	88.345	ENSCAFG00000005224	TNRC6C	99	87.929	Canis_familiaris
ENSMOCG00000015879	Tnrc6c	99	90.043	ENSCAFG00020006661	TNRC6C	100	89.633	Canis_lupus_dingo
ENSMOCG00000015879	Tnrc6c	100	86.471	ENSCHIG00000026004	TNRC6C	100	86.270	Capra_hircus
ENSMOCG00000015879	Tnrc6c	97	90.377	ENSTSYG00000005403	TNRC6C	100	90.493	Carlito_syrichta
ENSMOCG00000015879	Tnrc6c	100	84.774	ENSCAPG00000007307	TNRC6C	99	85.722	Cavia_aperea
ENSMOCG00000015879	Tnrc6c	100	89.689	ENSCPOG00000000467	TNRC6C	100	90.092	Cavia_porcellus
ENSMOCG00000015879	Tnrc6c	100	89.232	ENSCCAG00000030524	TNRC6C	100	91.770	Cebus_capucinus
ENSMOCG00000015879	Tnrc6c	100	89.288	ENSCATG00000033135	TNRC6C	100	91.770	Cercocebus_atys
ENSMOCG00000015879	Tnrc6c	100	92.281	ENSCLAG00000011139	TNRC6C	99	91.653	Chinchilla_lanigera
ENSMOCG00000015879	Tnrc6c	99	89.628	ENSCSAG00000005167	TNRC6C	99	89.375	Chlorocebus_sabaeus
ENSMOCG00000015879	Tnrc6c	76	90.112	ENSCHOG00000000088	TNRC6C	75	89.372	Choloepus_hoffmanni
ENSMOCG00000015879	Tnrc6c	100	86.609	ENSCPBG00000027960	TNRC6C	100	86.746	Chrysemys_picta_bellii
ENSMOCG00000015879	Tnrc6c	100	89.119	ENSCANG00000041771	TNRC6C	100	91.593	Colobus_angolensis_palliatus
ENSMOCG00000015879	Tnrc6c	100	96.092	ENSCGRG00001022686	Tnrc6c	100	96.000	Cricetulus_griseus_chok1gshd
ENSMOCG00000015879	Tnrc6c	100	96.536	ENSCGRG00000018041	Tnrc6c	100	96.000	Cricetulus_griseus_crigri
ENSMOCG00000015879	Tnrc6c	77	52.822	ENSCSEG00000012744	tnrc6c1	98	47.371	Cynoglossus_semilaevis
ENSMOCG00000015879	Tnrc6c	100	51.830	ENSDARG00000076847	tnrc6c1	99	51.850	Danio_rerio
ENSMOCG00000015879	Tnrc6c	100	87.184	ENSDNOG00000003247	TNRC6C	99	85.239	Dasypus_novemcinctus
ENSMOCG00000015879	Tnrc6c	100	86.919	ENSDORG00000004558	Tnrc6c	100	87.891	Dipodomys_ordii
ENSMOCG00000015879	Tnrc6c	90	81.652	ENSETEG00000005527	TNRC6C	90	81.739	Echinops_telfairi
ENSMOCG00000015879	Tnrc6c	97	90.634	ENSEASG00005004799	TNRC6C	100	90.753	Equus_asinus_asinus
ENSMOCG00000015879	Tnrc6c	100	90.501	ENSECAG00000012486	TNRC6C	99	89.771	Equus_caballus
ENSMOCG00000015879	Tnrc6c	96	90.186	ENSEEUG00000010008	TNRC6C	96	90.186	Erinaceus_europaeus
ENSMOCG00000015879	Tnrc6c	100	85.618	ENSFCAG00000028358	TNRC6C	100	88.423	Felis_catus
ENSMOCG00000015879	Tnrc6c	97	83.324	ENSFALG00000000848	TNRC6C	100	83.154	Ficedula_albicollis
ENSMOCG00000015879	Tnrc6c	100	91.244	ENSFDAG00000010368	TNRC6C	100	91.244	Fukomys_damarensis
ENSMOCG00000015879	Tnrc6c	99	47.594	ENSFHEG00000002936	tnrc6c1	99	46.736	Fundulus_heteroclitus
ENSMOCG00000015879	Tnrc6c	100	85.304	ENSGALG00000001725	TNRC6C	100	87.255	Gallus_gallus
ENSMOCG00000015879	Tnrc6c	99	49.459	ENSGAFG00000019019	tnrc6c1	99	48.019	Gambusia_affinis
ENSMOCG00000015879	Tnrc6c	77	53.582	ENSGACG00000012320	tnrc6c1	97	47.949	Gasterosteus_aculeatus
ENSMOCG00000015879	Tnrc6c	100	85.985	ENSGAGG00000022043	TNRC6C	99	85.577	Gopherus_agassizii
ENSMOCG00000015879	Tnrc6c	100	88.453	ENSGGOG00000011304	TNRC6C	100	90.828	Gorilla_gorilla
ENSMOCG00000015879	Tnrc6c	96	50.721	ENSHBUG00000010846	tnrc6c1	98	50.749	Haplochromis_burtoni
ENSMOCG00000015879	Tnrc6c	100	91.820	ENSHGLG00000004809	TNRC6C	99	90.967	Heterocephalus_glaber_female
ENSMOCG00000015879	Tnrc6c	100	91.112	ENSHGLG00100012597	TNRC6C	99	90.817	Heterocephalus_glaber_male
ENSMOCG00000015879	Tnrc6c	99	52.290	ENSIPUG00000000818	tnrc6c1	98	51.842	Ictalurus_punctatus
ENSMOCG00000015879	Tnrc6c	100	91.139	ENSSTOG00000009101	TNRC6C	100	91.369	Ictidomys_tridecemlineatus
ENSMOCG00000015879	Tnrc6c	100	91.667	ENSJJAG00000017055	Tnrc6c	99	91.219	Jaculus_jaculus
ENSMOCG00000015879	Tnrc6c	99	47.838	ENSKMAG00000021023	tnrc6c1	97	51.014	Kryptolebias_marmoratus
ENSMOCG00000015879	Tnrc6c	100	75.442	ENSLACG00000015283	TNRC6C	100	75.613	Latimeria_chalumnae
ENSMOCG00000015879	Tnrc6c	100	56.432	ENSLOCG00000013377	tnrc6c1	99	56.256	Lepisosteus_oculatus
ENSMOCG00000015879	Tnrc6c	100	89.564	ENSLAFG00000011122	TNRC6C	99	89.421	Loxodonta_africana
ENSMOCG00000015879	Tnrc6c	100	89.344	ENSMFAG00000043943	TNRC6C	100	91.829	Macaca_fascicularis
ENSMOCG00000015879	Tnrc6c	100	89.746	ENSMMUG00000011924	TNRC6C	100	91.829	Macaca_mulatta
ENSMOCG00000015879	Tnrc6c	100	89.288	ENSMNEG00000030405	TNRC6C	100	91.770	Macaca_nemestrina
ENSMOCG00000015879	Tnrc6c	100	89.344	ENSMLEG00000033436	TNRC6C	100	91.829	Mandrillus_leucophaeus
ENSMOCG00000015879	Tnrc6c	95	53.231	ENSMAMG00000023613	tnrc6c1	97	50.000	Mastacembelus_armatus
ENSMOCG00000015879	Tnrc6c	96	50.511	ENSMZEG00005010920	tnrc6c1	98	50.474	Maylandia_zebra
ENSMOCG00000015879	Tnrc6c	100	77.728	ENSMGAG00000003906	TNRC6C	100	77.686	Meleagris_gallopavo
ENSMOCG00000015879	Tnrc6c	97	96.095	ENSMAUG00000021618	Tnrc6c	100	96.568	Mesocricetus_auratus
ENSMOCG00000015879	Tnrc6c	100	89.849	ENSMICG00000003952	TNRC6C	100	92.303	Microcebus_murinus
ENSMOCG00000015879	Tnrc6c	76	55.403	ENSMMOG00000005203	tnrc6c1	100	50.226	Mola_mola
ENSMOCG00000015879	Tnrc6c	100	85.911	ENSMODG00000001785	TNRC6C	99	85.343	Monodelphis_domestica
ENSMOCG00000015879	Tnrc6c	100	96.882	MGP_CAROLIEiJ_G0017465	Tnrc6c	100	96.882	Mus_caroli
ENSMOCG00000015879	Tnrc6c	100	96.824	ENSMUSG00000025571	Tnrc6c	100	96.824	Mus_musculus
ENSMOCG00000015879	Tnrc6c	100	96.824	MGP_PahariEiJ_G0018593	Tnrc6c	100	96.824	Mus_pahari
ENSMOCG00000015879	Tnrc6c	100	96.882	MGP_SPRETEiJ_G0018309	Tnrc6c	100	96.882	Mus_spretus
ENSMOCG00000015879	Tnrc6c	99	85.079	ENSMPUG00000013348	TNRC6C	98	85.432	Mustela_putorius_furo
ENSMOCG00000015879	Tnrc6c	100	81.965	ENSMLUG00000014431	TNRC6C	98	81.095	Myotis_lucifugus
ENSMOCG00000015879	Tnrc6c	100	94.310	ENSNGAG00000012203	Tnrc6c	99	94.406	Nannospalax_galili
ENSMOCG00000015879	Tnrc6c	96	51.168	ENSNBRG00000005344	tnrc6c1	98	51.158	Neolamprologus_brichardi
ENSMOCG00000015879	Tnrc6c	99	86.588	ENSNLEG00000000047	TNRC6C	99	87.245	Nomascus_leucogenys
ENSMOCG00000015879	Tnrc6c	98	80.577	ENSMEUG00000005104	TNRC6C	100	80.577	Notamacropus_eugenii
ENSMOCG00000015879	Tnrc6c	97	91.637	ENSODEG00000012499	TNRC6C	100	91.934	Octodon_degus
ENSMOCG00000015879	Tnrc6c	91	50.851	ENSONIG00000002210	tnrc6c1	96	53.586	Oreochromis_niloticus
ENSMOCG00000015879	Tnrc6c	100	85.106	ENSOANG00000009758	-	92	85.106	Ornithorhynchus_anatinus
ENSMOCG00000015879	Tnrc6c	85	77.729	ENSOCUG00000006122	TNRC6C	95	77.218	Oryctolagus_cuniculus
ENSMOCG00000015879	Tnrc6c	99	47.627	ENSORLG00000009837	tnrc6c1	100	67.286	Oryzias_latipes
ENSMOCG00000015879	Tnrc6c	99	46.631	ENSORLG00020016510	tnrc6c1	100	48.500	Oryzias_latipes_hni
ENSMOCG00000015879	Tnrc6c	81	42.637	ENSORLG00015000171	tnrc6c1	98	43.776	Oryzias_latipes_hsok
ENSMOCG00000015879	Tnrc6c	99	48.272	ENSOMEG00000000357	tnrc6c1	99	47.895	Oryzias_melastigma
ENSMOCG00000015879	Tnrc6c	97	89.333	ENSOGAG00000007197	TNRC6C	100	89.449	Otolemur_garnettii
ENSMOCG00000015879	Tnrc6c	96	82.578	ENSOARG00000006041	TNRC6C	97	82.678	Ovis_aries
ENSMOCG00000015879	Tnrc6c	100	89.063	ENSPPAG00000027160	TNRC6C	100	91.533	Pan_paniscus
ENSMOCG00000015879	Tnrc6c	100	85.786	ENSPPRG00000018881	TNRC6C	100	88.600	Panthera_pardus
ENSMOCG00000015879	Tnrc6c	100	89.063	ENSPTRG00000009699	TNRC6C	100	91.533	Pan_troglodytes
ENSMOCG00000015879	Tnrc6c	100	89.344	ENSPANG00000019994	TNRC6C	100	91.993	Papio_anubis
ENSMOCG00000015879	Tnrc6c	57	61.823	ENSPKIG00000005428	tnrc6c1	98	50.774	Paramormyrops_kingsleyae
ENSMOCG00000015879	Tnrc6c	100	84.598	ENSPSIG00000018069	TNRC6C	100	84.310	Pelodiscus_sinensis
ENSMOCG00000015879	Tnrc6c	63	55.054	ENSPMGG00000022911	tnrc6c1	97	63.968	Periophthalmus_magnuspinnatus
ENSMOCG00000015879	Tnrc6c	100	97.316	ENSPEMG00000009785	Tnrc6c	100	97.316	Peromyscus_maniculatus_bairdii
ENSMOCG00000015879	Tnrc6c	56	84.346	ENSPCIG00000017421	-	99	84.346	Phascolarctos_cinereus
ENSMOCG00000015879	Tnrc6c	99	49.379	ENSPFOG00000012560	tnrc6c1	97	54.450	Poecilia_formosa
ENSMOCG00000015879	Tnrc6c	94	50.544	ENSPLAG00000021055	tnrc6c1	97	49.971	Poecilia_latipinna
ENSMOCG00000015879	Tnrc6c	100	89.577	ENSPPYG00000008679	TNRC6C	98	89.479	Pongo_abelii
ENSMOCG00000015879	Tnrc6c	93	92.654	ENSPCAG00000012510	TNRC6C	90	92.654	Procavia_capensis
ENSMOCG00000015879	Tnrc6c	97	92.777	ENSPCOG00000021451	TNRC6C	100	92.836	Propithecus_coquereli
ENSMOCG00000015879	Tnrc6c	96	89.831	ENSPVAG00000002008	TNRC6C	95	89.831	Pteropus_vampyrus
ENSMOCG00000015879	Tnrc6c	96	50.034	ENSPNYG00000014477	tnrc6c1	99	49.375	Pundamilia_nyererei
ENSMOCG00000015879	Tnrc6c	97	96.200	ENSRNOG00000022395	Tnrc6c	100	96.200	Rattus_norvegicus
ENSMOCG00000015879	Tnrc6c	100	89.232	ENSRBIG00000027777	TNRC6C	100	91.711	Rhinopithecus_bieti
ENSMOCG00000015879	Tnrc6c	100	89.288	ENSRROG00000042912	TNRC6C	100	91.770	Rhinopithecus_roxellana
ENSMOCG00000015879	Tnrc6c	100	88.970	ENSSBOG00000023981	TNRC6C	100	89.217	Saimiri_boliviensis_boliviensis
ENSMOCG00000015879	Tnrc6c	51	86.255	ENSSHAG00000018330	-	100	85.606	Sarcophilus_harrisii
ENSMOCG00000015879	Tnrc6c	75	58.196	ENSSFOG00015006475	tnrc6c1	99	51.200	Scleropages_formosus
ENSMOCG00000015879	Tnrc6c	51	55.675	ENSSFOG00015004735	-	99	60.313	Scleropages_formosus
ENSMOCG00000015879	Tnrc6c	99	47.849	ENSSMAG00000012761	tnrc6c1	99	50.261	Scophthalmus_maximus
ENSMOCG00000015879	Tnrc6c	99	50.028	ENSSDUG00000002366	tnrc6c1	98	50.054	Seriola_dumerili
ENSMOCG00000015879	Tnrc6c	91	50.000	ENSSLDG00000025613	tnrc6c1	97	50.228	Seriola_lalandi_dorsalis
ENSMOCG00000015879	Tnrc6c	91	89.224	ENSSARG00000006816	TNRC6C	91	88.987	Sorex_araneus
ENSMOCG00000015879	Tnrc6c	80	82.431	ENSSPUG00000007341	TNRC6C	98	82.639	Sphenodon_punctatus
ENSMOCG00000015879	Tnrc6c	76	53.748	ENSSPAG00000014977	tnrc6c1	98	48.017	Stegastes_partitus
ENSMOCG00000015879	Tnrc6c	97	84.766	ENSSSCG00000034373	TNRC6C	100	85.003	Sus_scrofa
ENSMOCG00000015879	Tnrc6c	100	87.249	ENSTGUG00000007733	TNRC6C	100	87.134	Taeniopygia_guttata
ENSMOCG00000015879	Tnrc6c	76	53.259	ENSTRUG00000011685	tnrc6c1	100	48.677	Takifugu_rubripes
ENSMOCG00000015879	Tnrc6c	95	55.083	ENSTNIG00000005273	tnrc6c1	100	60.000	Tetraodon_nigroviridis
ENSMOCG00000015879	Tnrc6c	62	89.844	ENSTBEG00000005046	TNRC6C	99	82.042	Tupaia_belangeri
ENSMOCG00000015879	Tnrc6c	100	89.489	ENSTTRG00000010828	TNRC6C	99	89.661	Tursiops_truncatus
ENSMOCG00000015879	Tnrc6c	99	88.131	ENSUMAG00000013614	TNRC6C	99	88.145	Ursus_maritimus
ENSMOCG00000015879	Tnrc6c	50	79.613	ENSVPAG00000006765	-	99	79.840	Vicugna_pacos
ENSMOCG00000015879	Tnrc6c	97	90.758	ENSVVUG00000015268	TNRC6C	100	90.936	Vulpes_vulpes
ENSMOCG00000015879	Tnrc6c	97	74.194	ENSXETG00000019470	tnrc6c	100	73.635	Xenopus_tropicalis
ENSMOCG00000015879	Tnrc6c	99	50.362	ENSXMAG00000025971	tnrc6c1	99	50.026	Xiphophorus_maculatus