EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMOCG00000016019 (Gene tree)
Gene ID: 101988665
Gene Symbol: Slirp
Alias: 1810035L17Rik
Full Name: SRA stem-loop interacting RNA binding protein
Gene Type: protein_coding
Species: Microtus_ochrogaster
Status: putative
Strand: Plus strand
Length: 6278 bases
Position: chr1:25279463-25285740
Accession: 101988665
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMOCP00000017418	RRM_1	PF00076.22	3.6e-15	1	1
ENSMOCP00000017416	RRM_1	PF00076.22	5e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMOCT00000021207	-	303	-	ENSMOCP00000017418	101 (aa)	-	-
ENSMOCT00000021205	-	339	XM_005343406	ENSMOCP00000017416	112 (aa)	XP_005343463	-

Gene Model

Click here to download ENSMOCG00000016019's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000016019's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMOCG00000016019	Slirp	93	30.769	ENSMOCG00000014470	Hnrnpab	55	31.884
ENSMOCG00000016019	Slirp	78	32.308	ENSMOCG00000016931	Dazap1	89	32.308

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMOCG00000016019	Slirp	83	69.892	ENSG00000119705	SLIRP	99	77.333	Homo_sapiens
ENSMOCG00000016019	Slirp	69	55.714	ENSAPOG00000001298	slirp	71	57.746	Acanthochromis_polyacanthus
ENSMOCG00000016019	Slirp	90	78.022	ENSAMEG00000003975	SLIRP	100	78.022	Ailuropoda_melanoleuca
ENSMOCG00000016019	Slirp	88	46.465	ENSACIG00000023083	slirp	96	46.465	Amphilophus_citrinellus
ENSMOCG00000016019	Slirp	69	55.714	ENSAOCG00000006342	slirp	76	54.667	Amphiprion_ocellaris
ENSMOCG00000016019	Slirp	69	55.714	ENSAPEG00000015719	-	77	54.667	Amphiprion_percula
ENSMOCG00000016019	Slirp	69	55.714	ENSAPEG00000015917	slirp	76	54.667	Amphiprion_percula
ENSMOCG00000016019	Slirp	69	51.429	ENSATEG00000013525	slirp	78	48.718	Anabas_testudineus
ENSMOCG00000016019	Slirp	78	50.000	ENSAMXG00000018693	slirp	88	50.000	Astyanax_mexicanus
ENSMOCG00000016019	Slirp	97	73.394	ENSCJAG00000016946	SLIRP	95	79.545	Callithrix_jacchus
ENSMOCG00000016019	Slirp	97	74.312	ENSCAFG00020015876	-	98	74.312	Canis_lupus_dingo
ENSMOCG00000016019	Slirp	97	76.147	ENSCCAG00000030130	SLIRP	98	76.147	Cebus_capucinus
ENSMOCG00000016019	Slirp	96	70.370	ENSCATG00000036327	SLIRP	95	73.864	Cercocebus_atys
ENSMOCG00000016019	Slirp	96	72.222	ENSCSAG00000011736	SLIRP	96	72.222	Chlorocebus_sabaeus
ENSMOCG00000016019	Slirp	69	54.286	ENSCPBG00000026327	SLIRP	78	50.000	Chrysemys_picta_bellii
ENSMOCG00000016019	Slirp	68	86.957	ENSCANG00000032892	SLIRP	90	77.273	Colobus_angolensis_palliatus
ENSMOCG00000016019	Slirp	97	78.899	ENSCGRG00001024068	Slirp	98	78.899	Cricetulus_griseus_chok1gshd
ENSMOCG00000016019	Slirp	97	78.899	ENSCGRG00000017440	Slirp	98	78.899	Cricetulus_griseus_crigri
ENSMOCG00000016019	Slirp	69	54.286	ENSCSEG00000015766	slirp	72	57.746	Cynoglossus_semilaevis
ENSMOCG00000016019	Slirp	68	59.420	ENSCVAG00000012504	slirp	68	59.420	Cyprinodon_variegatus
ENSMOCG00000016019	Slirp	70	53.521	ENSDARG00000097753	slirp	76	52.564	Danio_rerio
ENSMOCG00000016019	Slirp	79	71.910	ENSDNOG00000007721	SLIRP	98	66.972	Dasypus_novemcinctus
ENSMOCG00000016019	Slirp	99	72.072	ENSDORG00000012379	Slirp	100	72.072	Dipodomys_ordii
ENSMOCG00000016019	Slirp	88	66.327	ENSETEG00000010345	SLIRP	98	65.138	Echinops_telfairi
ENSMOCG00000016019	Slirp	99	77.477	ENSEASG00005020193	SLIRP	100	77.477	Equus_asinus_asinus
ENSMOCG00000016019	Slirp	91	59.804	ENSEEUG00000007257	SLIRP	100	59.804	Erinaceus_europaeus
ENSMOCG00000016019	Slirp	77	51.163	ENSELUG00000016800	slirp	84	51.163	Esox_lucius
ENSMOCG00000016019	Slirp	91	80.435	ENSFCAG00000036326	SLIRP	94	80.435	Felis_catus
ENSMOCG00000016019	Slirp	69	51.429	ENSFALG00000012583	SLIRP	88	47.872	Ficedula_albicollis
ENSMOCG00000016019	Slirp	98	67.000	ENSFDAG00000008347	SLIRP	96	66.972	Fukomys_damarensis
ENSMOCG00000016019	Slirp	60	52.459	ENSFHEG00000004709	slirp	67	54.839	Fundulus_heteroclitus
ENSMOCG00000016019	Slirp	69	55.714	ENSGMOG00000016948	slirp	72	56.000	Gadus_morhua
ENSMOCG00000016019	Slirp	75	47.368	ENSGALG00000031238	SLIRP	80	47.368	Gallus_gallus
ENSMOCG00000016019	Slirp	70	56.338	ENSGAFG00000010998	slirp	72	58.333	Gambusia_affinis
ENSMOCG00000016019	Slirp	85	51.163	ENSGACG00000020137	slirp	99	51.163	Gasterosteus_aculeatus
ENSMOCG00000016019	Slirp	78	54.023	ENSGAGG00000009953	SLIRP	60	54.023	Gopherus_agassizii
ENSMOCG00000016019	Slirp	83	69.892	ENSGGOG00000011059	-	95	72.727	Gorilla_gorilla
ENSMOCG00000016019	Slirp	97	63.303	ENSHGLG00000018491	SLIRP	98	63.303	Heterocephalus_glaber_female
ENSMOCG00000016019	Slirp	97	63.303	ENSHGLG00100014153	SLIRP	98	63.303	Heterocephalus_glaber_male
ENSMOCG00000016019	Slirp	79	51.685	ENSHCOG00000006795	slirp	90	51.685	Hippocampus_comes
ENSMOCG00000016019	Slirp	69	52.857	ENSIPUG00000010214	SLIRP	74	52.703	Ictalurus_punctatus
ENSMOCG00000016019	Slirp	88	76.531	ENSSTOG00000034316	SLIRP	98	74.312	Ictidomys_tridecemlineatus
ENSMOCG00000016019	Slirp	77	42.308	ENSKMAG00000002038	slirp	75	42.308	Kryptolebias_marmoratus
ENSMOCG00000016019	Slirp	78	49.425	ENSLBEG00000007564	slirp	87	49.425	Labrus_bergylta
ENSMOCG00000016019	Slirp	78	54.545	ENSLACG00000013434	SLIRP	83	54.545	Latimeria_chalumnae
ENSMOCG00000016019	Slirp	96	72.222	ENSMFAG00000042960	SLIRP	95	75.000	Macaca_fascicularis
ENSMOCG00000016019	Slirp	96	71.296	ENSMMUG00000029256	SLIRP	95	73.864	Macaca_mulatta
ENSMOCG00000016019	Slirp	96	72.222	ENSMNEG00000028921	SLIRP	95	75.000	Macaca_nemestrina
ENSMOCG00000016019	Slirp	87	73.864	ENSMLEG00000043644	SLIRP	90	73.864	Mandrillus_leucophaeus
ENSMOCG00000016019	Slirp	69	55.714	ENSMZEG00005004617	slirp	72	57.746	Maylandia_zebra
ENSMOCG00000016019	Slirp	97	82.569	ENSMAUG00000003857	Slirp	98	82.569	Mesocricetus_auratus
ENSMOCG00000016019	Slirp	97	65.138	ENSMICG00000012080	SLIRP	98	65.138	Microcebus_murinus
ENSMOCG00000016019	Slirp	78	50.000	ENSMMOG00000018268	slirp	88	50.000	Mola_mola
ENSMOCG00000016019	Slirp	70	64.789	ENSMODG00000005207	-	100	64.789	Monodelphis_domestica
ENSMOCG00000016019	Slirp	69	52.857	ENSMALG00000012581	slirp	77	52.000	Monopterus_albus
ENSMOCG00000016019	Slirp	100	74.107	MGP_CAROLIEiJ_G0017995	Slirp	100	75.000	Mus_caroli
ENSMOCG00000016019	Slirp	100	75.893	ENSMUSG00000021040	Slirp	100	75.893	Mus_musculus
ENSMOCG00000016019	Slirp	100	75.893	MGP_SPRETEiJ_G0018840	Slirp	100	75.893	Mus_spretus
ENSMOCG00000016019	Slirp	80	77.778	ENSMLUG00000024998	-	98	72.477	Myotis_lucifugus
ENSMOCG00000016019	Slirp	88	73.469	ENSMLUG00000029544	-	98	71.560	Myotis_lucifugus
ENSMOCG00000016019	Slirp	96	75.000	ENSNGAG00000016363	Slirp	100	75.000	Nannospalax_galili
ENSMOCG00000016019	Slirp	96	62.963	ENSNLEG00000032459	-	95	65.909	Nomascus_leucogenys
ENSMOCG00000016019	Slirp	89	62.000	ENSNLEG00000027238	-	97	63.095	Nomascus_leucogenys
ENSMOCG00000016019	Slirp	100	71.429	ENSODEG00000012580	SLIRP	100	72.826	Octodon_degus
ENSMOCG00000016019	Slirp	69	55.714	ENSONIG00000011692	slirp	72	57.746	Oreochromis_niloticus
ENSMOCG00000016019	Slirp	71	66.667	ENSOANG00000022366	SLIRP	81	61.111	Ornithorhynchus_anatinus
ENSMOCG00000016019	Slirp	78	49.425	ENSORLG00000010761	slirp	67	49.425	Oryzias_latipes
ENSMOCG00000016019	Slirp	69	57.143	ENSORLG00020022188	slirp	71	59.155	Oryzias_latipes_hni
ENSMOCG00000016019	Slirp	96	44.444	ENSORLG00015020171	slirp	98	44.444	Oryzias_latipes_hsok
ENSMOCG00000016019	Slirp	69	57.143	ENSOMEG00000019321	slirp	71	59.155	Oryzias_melastigma
ENSMOCG00000016019	Slirp	83	68.817	ENSPPAG00000040710	-	95	72.727	Pan_paniscus
ENSMOCG00000016019	Slirp	87	82.955	ENSPPRG00000014350	SLIRP	90	82.955	Panthera_pardus
ENSMOCG00000016019	Slirp	87	82.955	ENSPTIG00000014196	SLIRP	90	82.955	Panthera_tigris_altaica
ENSMOCG00000016019	Slirp	83	69.892	ENSPTRG00000030691	SLIRP	95	72.727	Pan_troglodytes
ENSMOCG00000016019	Slirp	96	72.222	ENSPANG00000026323	SLIRP	95	75.000	Papio_anubis
ENSMOCG00000016019	Slirp	59	55.000	ENSPKIG00000008831	slirp	60	55.738	Paramormyrops_kingsleyae
ENSMOCG00000016019	Slirp	68	65.217	ENSPMGG00000010541	slirp	79	65.217	Periophthalmus_magnuspinnatus
ENSMOCG00000016019	Slirp	89	81.319	ENSPEMG00000013234	Slirp	100	81.373	Peromyscus_maniculatus_bairdii
ENSMOCG00000016019	Slirp	64	49.231	ENSPMAG00000009355	slirp	74	49.254	Petromyzon_marinus
ENSMOCG00000016019	Slirp	85	59.091	ENSPCIG00000026842	-	95	59.091	Phascolarctos_cinereus
ENSMOCG00000016019	Slirp	69	54.286	ENSPFOG00000006758	slirp	72	55.556	Poecilia_formosa
ENSMOCG00000016019	Slirp	69	54.286	ENSPLAG00000011140	slirp	72	55.556	Poecilia_latipinna
ENSMOCG00000016019	Slirp	69	54.286	ENSPMEG00000019535	slirp	72	55.556	Poecilia_mexicana
ENSMOCG00000016019	Slirp	69	54.286	ENSPREG00000011673	slirp	72	55.556	Poecilia_reticulata
ENSMOCG00000016019	Slirp	97	64.220	ENSPPYG00000006030	SLIRP	97	64.220	Pongo_abelii
ENSMOCG00000016019	Slirp	97	67.890	ENSPCOG00000015159	SLIRP	98	67.890	Propithecus_coquereli
ENSMOCG00000016019	Slirp	78	57.955	ENSPNAG00000008633	slirp	89	57.955	Pygocentrus_nattereri
ENSMOCG00000016019	Slirp	96	71.296	ENSRBIG00000032222	-	95	75.000	Rhinopithecus_bieti
ENSMOCG00000016019	Slirp	87	69.318	ENSRBIG00000031396	-	100	67.000	Rhinopithecus_bieti
ENSMOCG00000016019	Slirp	96	68.519	ENSRBIG00000035817	-	99	68.519	Rhinopithecus_bieti
ENSMOCG00000016019	Slirp	82	72.289	ENSRBIG00000032998	-	87	69.474	Rhinopithecus_bieti
ENSMOCG00000016019	Slirp	79	76.250	ENSRROG00000041312	-	99	69.903	Rhinopithecus_roxellana
ENSMOCG00000016019	Slirp	87	70.455	ENSRROG00000035604	-	100	68.000	Rhinopithecus_roxellana
ENSMOCG00000016019	Slirp	73	81.081	ENSRROG00000017133	-	97	70.968	Rhinopithecus_roxellana
ENSMOCG00000016019	Slirp	79	78.652	ENSRROG00000036656	-	95	73.864	Rhinopithecus_roxellana
ENSMOCG00000016019	Slirp	87	77.273	ENSSBOG00000020014	SLIRP	95	77.273	Saimiri_boliviensis_boliviensis
ENSMOCG00000016019	Slirp	78	54.023	ENSSFOG00015011165	slirp	88	54.023	Scleropages_formosus
ENSMOCG00000016019	Slirp	96	37.963	ENSSMAG00000012930	slirp	96	37.963	Scophthalmus_maximus
ENSMOCG00000016019	Slirp	69	60.000	ENSSLDG00000023136	slirp	65	61.111	Seriola_lalandi_dorsalis
ENSMOCG00000016019	Slirp	71	50.000	ENSSPUG00000009346	SLIRP	77	53.333	Sphenodon_punctatus
ENSMOCG00000016019	Slirp	69	52.857	ENSSPAG00000013477	slirp	74	51.351	Stegastes_partitus
ENSMOCG00000016019	Slirp	97	74.312	ENSSSCG00000028167	SLIRP	98	74.312	Sus_scrofa
ENSMOCG00000016019	Slirp	77	47.674	ENSTGUG00000012337	SLIRP	88	50.000	Taeniopygia_guttata
ENSMOCG00000016019	Slirp	68	54.286	ENSTRUG00000020127	slirp	72	53.425	Takifugu_rubripes
ENSMOCG00000016019	Slirp	97	74.312	ENSUAMG00000022445	SLIRP	98	74.312	Ursus_americanus
ENSMOCG00000016019	Slirp	97	75.229	ENSUMAG00000007166	SLIRP	98	75.229	Ursus_maritimus
ENSMOCG00000016019	Slirp	97	76.147	ENSVPAG00000001781	SLIRP	98	76.147	Vicugna_pacos
ENSMOCG00000016019	Slirp	83	78.495	ENSVVUG00000004436	SLIRP	98	75.229	Vulpes_vulpes
ENSMOCG00000016019	Slirp	69	60.000	ENSXETG00000030343	SLIRP	79	60.000	Xenopus_tropicalis
ENSMOCG00000016019	Slirp	69	52.857	ENSXCOG00000009422	slirp	72	54.167	Xiphophorus_couchianus
ENSMOCG00000016019	Slirp	69	54.286	ENSXMAG00000015655	slirp	72	55.556	Xiphophorus_maculatus