EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMOCG00000016590 (Gene tree)
Gene ID: 101986095
Gene Symbol: Smg5
Alias: -
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Microtus_ochrogaster
Status: putative
Strand: Minus strand
Length: 28110 bases
Position: chr21:312213-340322
Accession: 101986095
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMOCP00000018237	EST1	PF10374.9	7.4e-24	1	1
ENSMOCP00000018232	EST1	PF10374.9	7.5e-24	1	1
ENSMOCP00000018237	EST1_DNA_bind	PF10373.9	4.7e-40	1	2
ENSMOCP00000018237	EST1_DNA_bind	PF10373.9	4.7e-40	2	2
ENSMOCP00000018232	EST1_DNA_bind	PF10373.9	5e-40	1	2
ENSMOCP00000018232	EST1_DNA_bind	PF10373.9	5e-40	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMOCT00000022030	-	4424	XM_005356878	ENSMOCP00000018232	1016 (aa)	XP_005356935	UPI00038C4924
ENSMOCT00000022035	-	3006	-	ENSMOCP00000018237	1001 (aa)	-	-

Gene Model

Click here to download ENSMOCG00000016590's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000016590's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMOCG00000016590	Smg5	54	45.109	ENSMOCG00000008423	-	70	54.750

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMOCG00000016590	Smg5	100	91.176	ENSG00000198952	SMG5	100	91.569	Homo_sapiens
ENSMOCG00000016590	Smg5	99	66.928	ENSAPOG00000019690	smg5	99	66.995	Acanthochromis_polyacanthus
ENSMOCG00000016590	Smg5	98	87.563	ENSAMEG00000014458	SMG5	100	87.563	Ailuropoda_melanoleuca
ENSMOCG00000016590	Smg5	99	64.368	ENSACIG00000001353	smg5	99	65.709	Amphilophus_citrinellus
ENSMOCG00000016590	Smg5	99	63.848	ENSAOCG00000019483	smg5	95	65.660	Amphiprion_ocellaris
ENSMOCG00000016590	Smg5	99	65.460	ENSAPEG00000022949	smg5	99	65.818	Amphiprion_percula
ENSMOCG00000016590	Smg5	99	65.444	ENSATEG00000005348	smg5	99	66.374	Anabas_testudineus
ENSMOCG00000016590	Smg5	98	76.585	ENSAPLG00000010263	SMG5	100	76.871	Anas_platyrhynchos
ENSMOCG00000016590	Smg5	100	90.882	ENSANAG00000032899	SMG5	100	91.471	Aotus_nancymaae
ENSMOCG00000016590	Smg5	99	64.224	ENSACLG00000009311	smg5	99	65.125	Astatotilapia_calliptera
ENSMOCG00000016590	Smg5	100	90.588	ENSBTAG00000009435	SMG5	100	90.882	Bos_taurus
ENSMOCG00000016590	Smg5	99	43.516	ENSBTAG00000021747	-	99	43.491	Bos_taurus
ENSMOCG00000016590	Smg5	100	90.784	ENSCJAG00000005684	SMG5	100	91.373	Callithrix_jacchus
ENSMOCG00000016590	Smg5	100	89.598	ENSCAFG00000016839	SMG5	100	89.794	Canis_familiaris
ENSMOCG00000016590	Smg5	100	89.598	ENSCAFG00020006061	SMG5	100	89.794	Canis_lupus_dingo
ENSMOCG00000016590	Smg5	100	90.098	ENSCHIG00000007709	SMG5	100	90.392	Capra_hircus
ENSMOCG00000016590	Smg5	99	43.525	ENSCHIG00000006323	-	99	43.555	Capra_hircus
ENSMOCG00000016590	Smg5	100	90.304	ENSTSYG00000004099	SMG5	100	90.500	Carlito_syrichta
ENSMOCG00000016590	Smg5	97	70.974	ENSCAPG00000003631	SMG5	100	71.954	Cavia_aperea
ENSMOCG00000016590	Smg5	100	90.196	ENSCPOG00000015696	SMG5	100	90.686	Cavia_porcellus
ENSMOCG00000016590	Smg5	100	90.588	ENSCCAG00000027409	SMG5	100	91.176	Cebus_capucinus
ENSMOCG00000016590	Smg5	100	91.569	ENSCATG00000030539	SMG5	100	91.863	Cercocebus_atys
ENSMOCG00000016590	Smg5	100	90.882	ENSCLAG00000003983	SMG5	100	91.471	Chinchilla_lanigera
ENSMOCG00000016590	Smg5	100	91.471	ENSCSAG00000002120	SMG5	100	91.765	Chlorocebus_sabaeus
ENSMOCG00000016590	Smg5	55	89.011	ENSCHOG00000008741	-	57	89.011	Choloepus_hoffmanni
ENSMOCG00000016590	Smg5	94	76.089	ENSCPBG00000025848	SMG5	100	76.488	Chrysemys_picta_bellii
ENSMOCG00000016590	Smg5	93	34.939	ENSCING00000008706	-	99	34.420	Ciona_intestinalis
ENSMOCG00000016590	Smg5	100	87.941	ENSCANG00000029208	SMG5	100	88.235	Colobus_angolensis_palliatus
ENSMOCG00000016590	Smg5	100	97.350	ENSCGRG00001006336	Smg5	100	97.350	Cricetulus_griseus_chok1gshd
ENSMOCG00000016590	Smg5	98	97.487	ENSCGRG00000005111	Smg5	100	97.485	Cricetulus_griseus_crigri
ENSMOCG00000016590	Smg5	99	64.293	ENSCSEG00000014220	smg5	99	65.260	Cynoglossus_semilaevis
ENSMOCG00000016590	Smg5	99	60.215	ENSCVAG00000000529	smg5	99	60.293	Cyprinodon_variegatus
ENSMOCG00000016590	Smg5	92	36.267	ENSDNOG00000039862	-	100	35.819	Dasypus_novemcinctus
ENSMOCG00000016590	Smg5	100	86.471	ENSDNOG00000000051	SMG5	100	86.667	Dasypus_novemcinctus
ENSMOCG00000016590	Smg5	100	89.902	ENSDORG00000010382	Smg5	100	90.294	Dipodomys_ordii
ENSMOCG00000016590	Smg5	61	40.000	FBgn0019890	Smg5	57	40.000	Drosophila_melanogaster
ENSMOCG00000016590	Smg5	83	93.204	ENSETEG00000010336	SMG5	91	93.204	Echinops_telfairi
ENSMOCG00000016590	Smg5	90	46.978	ENSEBUG00000003739	smg5	98	47.335	Eptatretus_burgeri
ENSMOCG00000016590	Smg5	100	90.686	ENSEASG00005019122	SMG5	100	91.373	Equus_asinus_asinus
ENSMOCG00000016590	Smg5	100	90.686	ENSECAG00000001389	SMG5	100	91.373	Equus_caballus
ENSMOCG00000016590	Smg5	72	96.830	ENSEEUG00000012690	SMG5	73	96.830	Erinaceus_europaeus
ENSMOCG00000016590	Smg5	99	64.899	ENSELUG00000012585	smg5	99	64.706	Esox_lucius
ENSMOCG00000016590	Smg5	100	88.824	ENSFCAG00000011783	SMG5	100	89.314	Felis_catus
ENSMOCG00000016590	Smg5	59	79.636	ENSFALG00000001166	-	99	80.165	Ficedula_albicollis
ENSMOCG00000016590	Smg5	98	88.844	ENSFDAG00000017388	SMG5	100	88.330	Fukomys_damarensis
ENSMOCG00000016590	Smg5	97	61.662	ENSFHEG00000013939	smg5	95	68.690	Fundulus_heteroclitus
ENSMOCG00000016590	Smg5	99	60.724	ENSGMOG00000007310	smg5	99	60.635	Gadus_morhua
ENSMOCG00000016590	Smg5	99	76.663	ENSGALG00000029918	-	100	76.755	Gallus_gallus
ENSMOCG00000016590	Smg5	73	74.943	ENSGAFG00000021691	smg5	96	68.371	Gambusia_affinis
ENSMOCG00000016590	Smg5	100	77.514	ENSGAGG00000016131	SMG5	100	77.788	Gopherus_agassizii
ENSMOCG00000016590	Smg5	100	90.980	ENSGGOG00000010932	SMG5	100	91.275	Gorilla_gorilla
ENSMOCG00000016590	Smg5	99	64.293	ENSHBUG00000008654	smg5	99	64.751	Haplochromis_burtoni
ENSMOCG00000016590	Smg5	100	88.922	ENSHGLG00000019152	SMG5	100	88.943	Heterocephalus_glaber_female
ENSMOCG00000016590	Smg5	91	89.157	ENSHGLG00100015948	SMG5	99	89.180	Heterocephalus_glaber_male
ENSMOCG00000016590	Smg5	86	72.861	ENSHCOG00000010229	smg5	84	72.861	Hippocampus_comes
ENSMOCG00000016590	Smg5	99	62.500	ENSIPUG00000006624	Smg5	99	62.670	Ictalurus_punctatus
ENSMOCG00000016590	Smg5	100	90.980	ENSSTOG00000001780	SMG5	100	91.275	Ictidomys_tridecemlineatus
ENSMOCG00000016590	Smg5	100	91.194	ENSJJAG00000022763	Smg5	100	91.683	Jaculus_jaculus
ENSMOCG00000016590	Smg5	91	76.581	ENSKMAG00000014586	smg5	99	60.850	Kryptolebias_marmoratus
ENSMOCG00000016590	Smg5	99	64.909	ENSLBEG00000002145	smg5	99	65.511	Labrus_bergylta
ENSMOCG00000016590	Smg5	100	63.283	ENSLACG00000010521	SMG5	100	63.852	Latimeria_chalumnae
ENSMOCG00000016590	Smg5	100	89.608	ENSLAFG00000006241	SMG5	100	89.608	Loxodonta_africana
ENSMOCG00000016590	Smg5	100	91.471	ENSMFAG00000045357	SMG5	100	91.765	Macaca_fascicularis
ENSMOCG00000016590	Smg5	100	91.471	ENSMMUG00000000090	SMG5	100	91.765	Macaca_mulatta
ENSMOCG00000016590	Smg5	100	91.373	ENSMNEG00000044425	SMG5	100	91.667	Macaca_nemestrina
ENSMOCG00000016590	Smg5	100	85.254	ENSMLEG00000041192	SMG5	100	85.840	Mandrillus_leucophaeus
ENSMOCG00000016590	Smg5	99	61.002	ENSMAMG00000010683	smg5	100	60.907	Mastacembelus_armatus
ENSMOCG00000016590	Smg5	63	57.704	ENSMZEG00005016543	smg5	100	59.153	Maylandia_zebra
ENSMOCG00000016590	Smg5	99	62.871	ENSMZEG00005015815	smg5	99	63.183	Maylandia_zebra
ENSMOCG00000016590	Smg5	100	95.878	ENSMAUG00000010381	Smg5	100	96.075	Mesocricetus_auratus
ENSMOCG00000016590	Smg5	100	91.471	ENSMICG00000002257	SMG5	100	92.059	Microcebus_murinus
ENSMOCG00000016590	Smg5	99	58.333	ENSMMOG00000017199	smg5	99	59.406	Mola_mola
ENSMOCG00000016590	Smg5	89	86.308	ENSMODG00000016901	SMG5	98	86.644	Monodelphis_domestica
ENSMOCG00000016590	Smg5	97	35.595	ENSMODG00000004511	-	99	35.079	Monodelphis_domestica
ENSMOCG00000016590	Smg5	77	38.592	ENSMODG00000010675	-	84	38.992	Monodelphis_domestica
ENSMOCG00000016590	Smg5	81	38.537	ENSMODG00000004532	-	83	38.400	Monodelphis_domestica
ENSMOCG00000016590	Smg5	75	40.642	ENSMODG00000004735	-	86	40.642	Monodelphis_domestica
ENSMOCG00000016590	Smg5	99	60.161	ENSMALG00000010375	smg5	99	59.928	Monopterus_albus
ENSMOCG00000016590	Smg5	100	95.878	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSMOCG00000016590	Smg5	100	96.173	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSMOCG00000016590	Smg5	100	95.984	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSMOCG00000016590	Smg5	100	96.369	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSMOCG00000016590	Smg5	94	87.513	ENSMPUG00000004546	SMG5	100	87.723	Mustela_putorius_furo
ENSMOCG00000016590	Smg5	100	90.998	ENSMLUG00000008518	SMG5	100	90.509	Myotis_lucifugus
ENSMOCG00000016590	Smg5	98	44.188	ENSNGAG00000012101	-	98	44.444	Nannospalax_galili
ENSMOCG00000016590	Smg5	100	92.255	ENSNGAG00000020706	Smg5	100	92.451	Nannospalax_galili
ENSMOCG00000016590	Smg5	96	63.454	ENSNBRG00000004332	smg5	98	63.417	Neolamprologus_brichardi
ENSMOCG00000016590	Smg5	100	90.784	ENSNLEG00000012439	SMG5	100	91.373	Nomascus_leucogenys
ENSMOCG00000016590	Smg5	100	84.510	ENSMEUG00000012834	SMG5	100	84.510	Notamacropus_eugenii
ENSMOCG00000016590	Smg5	100	89.706	ENSOPRG00000009152	SMG5	100	89.804	Ochotona_princeps
ENSMOCG00000016590	Smg5	100	90.294	ENSODEG00000012237	SMG5	100	90.784	Octodon_degus
ENSMOCG00000016590	Smg5	90	40.132	ENSOCUG00000023338	-	99	40.458	Oryctolagus_cuniculus
ENSMOCG00000016590	Smg5	98	90.663	ENSOCUG00000012886	SMG5	100	90.863	Oryctolagus_cuniculus
ENSMOCG00000016590	Smg5	99	64.000	ENSORLG00020013127	smg5	99	65.554	Oryzias_latipes_hni
ENSMOCG00000016590	Smg5	99	63.813	ENSORLG00015019014	smg5	99	65.656	Oryzias_latipes_hsok
ENSMOCG00000016590	Smg5	52	70.936	ENSOMEG00000021330	smg5	92	59.786	Oryzias_melastigma
ENSMOCG00000016590	Smg5	100	90.294	ENSOGAG00000004966	SMG5	100	90.784	Otolemur_garnettii
ENSMOCG00000016590	Smg5	100	90.196	ENSOARG00000005778	SMG5	100	90.490	Ovis_aries
ENSMOCG00000016590	Smg5	99	43.398	ENSOARG00000011963	-	99	43.427	Ovis_aries
ENSMOCG00000016590	Smg5	100	90.882	ENSPPAG00000011996	SMG5	100	91.275	Pan_paniscus
ENSMOCG00000016590	Smg5	98	88.744	ENSPPRG00000011901	SMG5	100	88.945	Panthera_pardus
ENSMOCG00000016590	Smg5	99	80.853	ENSPTIG00000007892	SMG5	98	81.754	Panthera_tigris_altaica
ENSMOCG00000016590	Smg5	100	91.078	ENSPTRG00000049282	-	100	91.471	Pan_troglodytes
ENSMOCG00000016590	Smg5	100	91.078	ENSPTRG00000023925	SMG5	100	91.471	Pan_troglodytes
ENSMOCG00000016590	Smg5	100	91.569	ENSPANG00000011201	SMG5	100	91.863	Papio_anubis
ENSMOCG00000016590	Smg5	99	65.437	ENSPKIG00000009402	smg5	99	66.244	Paramormyrops_kingsleyae
ENSMOCG00000016590	Smg5	98	78.437	ENSPSIG00000015198	SMG5	100	78.698	Pelodiscus_sinensis
ENSMOCG00000016590	Smg5	99	60.239	ENSPMGG00000010465	smg5	99	60.184	Periophthalmus_magnuspinnatus
ENSMOCG00000016590	Smg5	100	97.350	ENSPEMG00000001819	Smg5	100	97.350	Peromyscus_maniculatus_bairdii
ENSMOCG00000016590	Smg5	99	49.182	ENSPMAG00000000410	smg5	100	50.381	Petromyzon_marinus
ENSMOCG00000016590	Smg5	100	85.798	ENSPCIG00000018938	SMG5	100	86.288	Phascolarctos_cinereus
ENSMOCG00000016590	Smg5	99	65.222	ENSPMEG00000014105	smg5	99	65.255	Poecilia_mexicana
ENSMOCG00000016590	Smg5	50	60.409	ENSPREG00000017713	smg5	99	61.408	Poecilia_reticulata
ENSMOCG00000016590	Smg5	100	91.176	ENSPPYG00000000723	SMG5	100	91.471	Pongo_abelii
ENSMOCG00000016590	Smg5	75	95.028	ENSPCAG00000008412	SMG5	81	95.028	Procavia_capensis
ENSMOCG00000016590	Smg5	100	91.275	ENSPCOG00000004741	SMG5	100	91.863	Propithecus_coquereli
ENSMOCG00000016590	Smg5	100	81.060	ENSPVAG00000016748	SMG5	100	81.863	Pteropus_vampyrus
ENSMOCG00000016590	Smg5	99	60.124	ENSPNYG00000013397	smg5	99	60.993	Pundamilia_nyererei
ENSMOCG00000016590	Smg5	99	61.909	ENSPNAG00000028363	smg5	99	62.228	Pygocentrus_nattereri
ENSMOCG00000016590	Smg5	100	96.369	ENSRNOG00000019590	Smg5	100	96.369	Rattus_norvegicus
ENSMOCG00000016590	Smg5	100	91.471	ENSRBIG00000027428	SMG5	100	91.765	Rhinopithecus_bieti
ENSMOCG00000016590	Smg5	100	91.275	ENSRROG00000030035	SMG5	100	91.863	Rhinopithecus_roxellana
ENSMOCG00000016590	Smg5	100	90.784	ENSSBOG00000033339	SMG5	100	91.373	Saimiri_boliviensis_boliviensis
ENSMOCG00000016590	Smg5	86	37.922	ENSSHAG00000000561	-	86	38.958	Sarcophilus_harrisii
ENSMOCG00000016590	Smg5	66	39.766	ENSSHAG00000000935	-	97	40.244	Sarcophilus_harrisii
ENSMOCG00000016590	Smg5	99	33.104	ENSSHAG00000009572	-	79	43.108	Sarcophilus_harrisii
ENSMOCG00000016590	Smg5	98	85.230	ENSSHAG00000014163	SMG5	100	85.529	Sarcophilus_harrisii
ENSMOCG00000016590	Smg5	99	65.889	ENSSFOG00015024175	smg5	99	65.514	Scleropages_formosus
ENSMOCG00000016590	Smg5	99	60.638	ENSSMAG00000013059	smg5	99	60.978	Scophthalmus_maximus
ENSMOCG00000016590	Smg5	99	60.140	ENSSDUG00000007122	smg5	99	60.638	Seriola_dumerili
ENSMOCG00000016590	Smg5	99	60.176	ENSSLDG00000011418	smg5	99	60.943	Seriola_lalandi_dorsalis
ENSMOCG00000016590	Smg5	92	77.199	ENSSARG00000012484	SMG5	100	77.307	Sorex_araneus
ENSMOCG00000016590	Smg5	94	76.109	ENSSPUG00000002260	SMG5	100	76.008	Sphenodon_punctatus
ENSMOCG00000016590	Smg5	91	76.179	ENSSPAG00000014266	smg5	99	64.649	Stegastes_partitus
ENSMOCG00000016590	Smg5	99	70.727	ENSSSCG00000039308	-	100	70.825	Sus_scrofa
ENSMOCG00000016590	Smg5	100	91.275	ENSSSCG00000006490	-	100	91.961	Sus_scrofa
ENSMOCG00000016590	Smg5	99	78.325	ENSTGUG00000003748	-	100	78.502	Taeniopygia_guttata
ENSMOCG00000016590	Smg5	99	63.208	ENSTRUG00000012580	smg5	99	63.830	Takifugu_rubripes
ENSMOCG00000016590	Smg5	99	64.466	ENSTNIG00000010303	smg5	99	64.210	Tetraodon_nigroviridis
ENSMOCG00000016590	Smg5	57	99.507	ENSTBEG00000002777	SMG5	57	99.507	Tupaia_belangeri
ENSMOCG00000016590	Smg5	100	86.569	ENSTTRG00000001401	SMG5	100	86.569	Tursiops_truncatus
ENSMOCG00000016590	Smg5	100	88.126	ENSUAMG00000013721	SMG5	100	88.616	Ursus_americanus
ENSMOCG00000016590	Smg5	98	83.868	ENSUMAG00000018041	SMG5	97	84.369	Ursus_maritimus
ENSMOCG00000016590	Smg5	98	81.407	ENSVPAG00000009446	SMG5	99	82.010	Vicugna_pacos
ENSMOCG00000016590	Smg5	100	89.804	ENSVVUG00000005887	SMG5	100	89.794	Vulpes_vulpes
ENSMOCG00000016590	Smg5	77	64.025	ENSXETG00000033791	SMG5	99	64.080	Xenopus_tropicalis
ENSMOCG00000016590	Smg5	59	77.033	ENSXCOG00000004379	smg5	96	70.330	Xiphophorus_couchianus
ENSMOCG00000016590	Smg5	99	65.370	ENSXMAG00000013499	smg5	99	65.243	Xiphophorus_maculatus