EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMOCG00000016925 (Gene tree)
Gene ID: 101988158
Gene Symbol: Lsm7
Alias: 0910001B06Rik|1110033F18Rik
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Microtus_ochrogaster
Status: putative
Strand: Plus strand
Length: 2154 bases
Position: chrLG1:2942772-2944925
Accession: 101988158
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMOCP00000018719	LSM	PF01423.22	3.6e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMOCT00000022525	-	348	XM_005359023	ENSMOCP00000018719	103 (aa)	XP_005359080	UPI00038BF1DE

Gene Model

Click here to download ENSMOCG00000016925's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000016925's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMOCG00000016925	Lsm7	69	36.620	ENSMOCG00000014309	-	83	36.620
ENSMOCG00000016925	Lsm7	72	35.526	ENSMOCG00000001688	Lsm8	73	35.526

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMOCG00000016925	Lsm7	100	99.029	ENSG00000130332	LSM7	100	99.029	Homo_sapiens
ENSMOCG00000016925	Lsm7	91	95.745	ENSAPOG00000015573	lsm7	81	95.745	Acanthochromis_polyacanthus
ENSMOCG00000016925	Lsm7	100	96.117	ENSAMEG00000005484	LSM7	100	96.117	Ailuropoda_melanoleuca
ENSMOCG00000016925	Lsm7	95	93.878	ENSACIG00000006498	lsm7	78	93.878	Amphilophus_citrinellus
ENSMOCG00000016925	Lsm7	98	94.059	ENSAOCG00000001077	lsm7	92	94.059	Amphiprion_ocellaris
ENSMOCG00000016925	Lsm7	100	92.233	ENSAPEG00000024447	lsm7	92	94.059	Amphiprion_percula
ENSMOCG00000016925	Lsm7	100	94.175	ENSAPEG00000000694	lsm7	100	94.175	Amphiprion_percula
ENSMOCG00000016925	Lsm7	100	94.175	ENSATEG00000008557	lsm7	100	94.175	Anabas_testudineus
ENSMOCG00000016925	Lsm7	100	99.029	ENSANAG00000037196	-	100	99.029	Aotus_nancymaae
ENSMOCG00000016925	Lsm7	100	90.291	ENSANAG00000022222	-	100	90.291	Aotus_nancymaae
ENSMOCG00000016925	Lsm7	100	93.204	ENSACLG00000021021	lsm7	100	93.204	Astatotilapia_calliptera
ENSMOCG00000016925	Lsm7	100	94.175	ENSAMXG00000037622	lsm7	100	94.175	Astyanax_mexicanus
ENSMOCG00000016925	Lsm7	100	99.029	ENSBTAG00000004521	LSM7	100	99.029	Bos_taurus
ENSMOCG00000016925	Lsm7	97	57.000	WBGene00003081	lsm-7	96	57.000	Caenorhabditis_elegans
ENSMOCG00000016925	Lsm7	54	100.000	ENSCJAG00000039713	-	68	100.000	Callithrix_jacchus
ENSMOCG00000016925	Lsm7	98	98.020	ENSCAFG00000019409	LSM7	98	98.020	Canis_familiaris
ENSMOCG00000016925	Lsm7	98	98.020	ENSCAFG00020018168	LSM7	74	98.020	Canis_lupus_dingo
ENSMOCG00000016925	Lsm7	100	97.087	ENSCHIG00000023663	LSM7	100	97.087	Capra_hircus
ENSMOCG00000016925	Lsm7	69	98.592	ENSCAPG00000014534	LSM7	100	98.592	Cavia_aperea
ENSMOCG00000016925	Lsm7	100	99.029	ENSCPOG00000014025	LSM7	100	99.029	Cavia_porcellus
ENSMOCG00000016925	Lsm7	98	99.010	ENSCCAG00000035456	LSM7	99	99.010	Cebus_capucinus
ENSMOCG00000016925	Lsm7	100	99.029	ENSCATG00000023543	LSM7	100	99.029	Cercocebus_atys
ENSMOCG00000016925	Lsm7	100	99.029	ENSCLAG00000011635	LSM7	100	99.029	Chinchilla_lanigera
ENSMOCG00000016925	Lsm7	100	99.029	ENSCSAG00000011599	LSM7	100	99.029	Chlorocebus_sabaeus
ENSMOCG00000016925	Lsm7	70	93.056	ENSCPBG00000021317	LSM7	77	93.056	Chrysemys_picta_bellii
ENSMOCG00000016925	Lsm7	93	81.250	ENSCING00000022134	-	97	81.250	Ciona_intestinalis
ENSMOCG00000016925	Lsm7	100	99.029	ENSCANG00000035525	LSM7	100	99.029	Colobus_angolensis_palliatus
ENSMOCG00000016925	Lsm7	87	88.889	ENSCGRG00001016005	-	92	88.889	Cricetulus_griseus_chok1gshd
ENSMOCG00000016925	Lsm7	100	100.000	ENSCGRG00001000807	-	100	100.000	Cricetulus_griseus_chok1gshd
ENSMOCG00000016925	Lsm7	87	88.889	ENSCGRG00000006821	-	92	88.889	Cricetulus_griseus_crigri
ENSMOCG00000016925	Lsm7	98	100.000	ENSCGRG00000014355	-	97	100.000	Cricetulus_griseus_crigri
ENSMOCG00000016925	Lsm7	98	94.059	ENSCSEG00000014900	lsm7	86	94.059	Cynoglossus_semilaevis
ENSMOCG00000016925	Lsm7	98	95.050	ENSCVAG00000021091	lsm7	94	95.050	Cyprinodon_variegatus
ENSMOCG00000016925	Lsm7	100	94.175	ENSDARG00000058328	lsm7	100	94.175	Danio_rerio
ENSMOCG00000016925	Lsm7	99	97.059	ENSDORG00000024460	Lsm7	100	97.059	Dipodomys_ordii
ENSMOCG00000016925	Lsm7	94	75.510	FBgn0261068	LSm7	89	75.510	Drosophila_melanogaster
ENSMOCG00000016925	Lsm7	98	96.040	ENSETEG00000012788	LSM7	99	96.040	Echinops_telfairi
ENSMOCG00000016925	Lsm7	100	85.437	ENSEBUG00000016992	lsm7	99	85.437	Eptatretus_burgeri
ENSMOCG00000016925	Lsm7	81	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSMOCG00000016925	Lsm7	100	97.087	ENSECAG00000001440	LSM7	66	97.087	Equus_caballus
ENSMOCG00000016925	Lsm7	100	98.058	ENSFCAG00000003445	LSM7	100	98.058	Felis_catus
ENSMOCG00000016925	Lsm7	98	96.040	ENSFALG00000011912	LSM7	100	96.040	Ficedula_albicollis
ENSMOCG00000016925	Lsm7	93	98.958	ENSFDAG00000007661	LSM7	100	98.958	Fukomys_damarensis
ENSMOCG00000016925	Lsm7	89	94.565	ENSFHEG00000006349	lsm7	90	95.050	Fundulus_heteroclitus
ENSMOCG00000016925	Lsm7	100	92.233	ENSGMOG00000013320	lsm7	100	92.233	Gadus_morhua
ENSMOCG00000016925	Lsm7	100	95.146	ENSGAFG00000013902	lsm7	100	95.146	Gambusia_affinis
ENSMOCG00000016925	Lsm7	100	93.204	ENSGACG00000010390	lsm7	100	93.204	Gasterosteus_aculeatus
ENSMOCG00000016925	Lsm7	100	99.029	ENSGGOG00000010172	LSM7	100	99.029	Gorilla_gorilla
ENSMOCG00000016925	Lsm7	100	93.204	ENSHBUG00000004616	lsm7	100	93.204	Haplochromis_burtoni
ENSMOCG00000016925	Lsm7	100	99.029	ENSHGLG00000010587	LSM7	100	99.029	Heterocephalus_glaber_female
ENSMOCG00000016925	Lsm7	100	99.029	ENSHGLG00100000852	LSM7	100	99.029	Heterocephalus_glaber_male
ENSMOCG00000016925	Lsm7	98	93.069	ENSHCOG00000020252	lsm7	100	93.069	Hippocampus_comes
ENSMOCG00000016925	Lsm7	100	96.117	ENSIPUG00000024724	lsm7	100	96.117	Ictalurus_punctatus
ENSMOCG00000016925	Lsm7	98	99.010	ENSSTOG00000028372	LSM7	99	99.010	Ictidomys_tridecemlineatus
ENSMOCG00000016925	Lsm7	98	99.010	ENSJJAG00000001936	Lsm7	98	99.010	Jaculus_jaculus
ENSMOCG00000016925	Lsm7	100	95.146	ENSKMAG00000022151	lsm7	100	95.146	Kryptolebias_marmoratus
ENSMOCG00000016925	Lsm7	100	93.204	ENSLBEG00000005203	lsm7	100	93.204	Labrus_bergylta
ENSMOCG00000016925	Lsm7	100	96.117	ENSLACG00000015700	LSM7	100	96.117	Latimeria_chalumnae
ENSMOCG00000016925	Lsm7	100	95.146	ENSLOCG00000004356	lsm7	100	95.146	Lepisosteus_oculatus
ENSMOCG00000016925	Lsm7	98	99.010	ENSLAFG00000029302	LSM7	98	99.010	Loxodonta_africana
ENSMOCG00000016925	Lsm7	100	99.029	ENSMFAG00000044572	LSM7	100	99.029	Macaca_fascicularis
ENSMOCG00000016925	Lsm7	100	99.029	ENSMMUG00000000452	LSM7	100	99.029	Macaca_mulatta
ENSMOCG00000016925	Lsm7	100	99.029	ENSMNEG00000004393	LSM7	100	99.029	Macaca_nemestrina
ENSMOCG00000016925	Lsm7	100	99.029	ENSMLEG00000030852	LSM7	100	99.029	Mandrillus_leucophaeus
ENSMOCG00000016925	Lsm7	100	93.204	ENSMAMG00000005410	lsm7	100	93.204	Mastacembelus_armatus
ENSMOCG00000016925	Lsm7	100	93.204	ENSMZEG00005028055	lsm7	100	93.204	Maylandia_zebra
ENSMOCG00000016925	Lsm7	100	97.087	ENSMGAG00000000750	LSM7	89	97.087	Meleagris_gallopavo
ENSMOCG00000016925	Lsm7	100	100.000	ENSMAUG00000009276	Lsm7	100	100.000	Mesocricetus_auratus
ENSMOCG00000016925	Lsm7	100	98.058	ENSMICG00000009988	-	100	98.058	Microcebus_murinus
ENSMOCG00000016925	Lsm7	100	99.029	ENSMICG00000028619	-	100	99.029	Microcebus_murinus
ENSMOCG00000016925	Lsm7	100	94.175	ENSMMOG00000019645	lsm7	98	94.175	Mola_mola
ENSMOCG00000016925	Lsm7	100	98.058	ENSMODG00000004722	LSM7	100	98.058	Monodelphis_domestica
ENSMOCG00000016925	Lsm7	100	93.204	ENSMALG00000014511	lsm7	79	93.204	Monopterus_albus
ENSMOCG00000016925	Lsm7	100	98.058	MGP_CAROLIEiJ_G0015607	Lsm7	100	98.058	Mus_caroli
ENSMOCG00000016925	Lsm7	100	98.058	ENSMUSG00000035215	Lsm7	100	98.058	Mus_musculus
ENSMOCG00000016925	Lsm7	100	98.058	MGP_PahariEiJ_G0031020	Lsm7	100	98.058	Mus_pahari
ENSMOCG00000016925	Lsm7	100	98.058	MGP_SPRETEiJ_G0016425	Lsm7	100	98.058	Mus_spretus
ENSMOCG00000016925	Lsm7	100	91.262	ENSMLUG00000024002	-	94	91.262	Myotis_lucifugus
ENSMOCG00000016925	Lsm7	100	96.117	ENSMLUG00000013097	-	100	96.117	Myotis_lucifugus
ENSMOCG00000016925	Lsm7	100	99.029	ENSNGAG00000021637	Lsm7	100	99.029	Nannospalax_galili
ENSMOCG00000016925	Lsm7	91	93.617	ENSNBRG00000001237	-	82	91.262	Neolamprologus_brichardi
ENSMOCG00000016925	Lsm7	98	93.069	ENSNBRG00000015770	lsm7	87	93.069	Neolamprologus_brichardi
ENSMOCG00000016925	Lsm7	100	99.029	ENSNLEG00000002265	LSM7	100	99.029	Nomascus_leucogenys
ENSMOCG00000016925	Lsm7	100	99.029	ENSODEG00000013590	-	100	99.029	Octodon_degus
ENSMOCG00000016925	Lsm7	100	78.641	ENSODEG00000008190	-	100	78.641	Octodon_degus
ENSMOCG00000016925	Lsm7	100	92.233	ENSODEG00000018769	-	100	92.233	Octodon_degus
ENSMOCG00000016925	Lsm7	100	93.204	ENSONIG00000001801	lsm7	89	93.204	Oreochromis_niloticus
ENSMOCG00000016925	Lsm7	100	94.175	ENSORLG00000023951	lsm7	100	94.175	Oryzias_latipes
ENSMOCG00000016925	Lsm7	100	94.175	ENSORLG00020022226	lsm7	100	94.175	Oryzias_latipes_hni
ENSMOCG00000016925	Lsm7	100	92.233	ENSORLG00015020044	lsm7	94	94.059	Oryzias_latipes_hsok
ENSMOCG00000016925	Lsm7	100	94.175	ENSOMEG00000012806	lsm7	100	94.175	Oryzias_melastigma
ENSMOCG00000016925	Lsm7	98	99.010	ENSOGAG00000000144	-	99	99.010	Otolemur_garnettii
ENSMOCG00000016925	Lsm7	100	89.320	ENSOGAG00000024373	-	100	89.320	Otolemur_garnettii
ENSMOCG00000016925	Lsm7	100	97.087	ENSOARG00000014013	LSM7	100	97.087	Ovis_aries
ENSMOCG00000016925	Lsm7	100	99.029	ENSPPAG00000026500	LSM7	100	99.029	Pan_paniscus
ENSMOCG00000016925	Lsm7	100	98.058	ENSPPRG00000008624	LSM7	100	98.058	Panthera_pardus
ENSMOCG00000016925	Lsm7	98	98.020	ENSPTIG00000016252	LSM7	98	98.020	Panthera_tigris_altaica
ENSMOCG00000016925	Lsm7	100	99.029	ENSPTRG00000010233	LSM7	100	99.029	Pan_troglodytes
ENSMOCG00000016925	Lsm7	100	99.029	ENSPANG00000020668	LSM7	100	99.029	Papio_anubis
ENSMOCG00000016925	Lsm7	100	96.117	ENSPKIG00000011325	lsm7	100	96.117	Paramormyrops_kingsleyae
ENSMOCG00000016925	Lsm7	98	97.030	ENSPSIG00000017149	LSM7	89	97.030	Pelodiscus_sinensis
ENSMOCG00000016925	Lsm7	100	94.175	ENSPMGG00000006498	lsm7	100	94.175	Periophthalmus_magnuspinnatus
ENSMOCG00000016925	Lsm7	100	98.058	ENSPCIG00000030454	LSM7	100	98.058	Phascolarctos_cinereus
ENSMOCG00000016925	Lsm7	100	92.233	ENSPFOG00000012467	lsm7	91	92.233	Poecilia_formosa
ENSMOCG00000016925	Lsm7	100	92.233	ENSPLAG00000000252	lsm7	94	93.137	Poecilia_latipinna
ENSMOCG00000016925	Lsm7	100	92.233	ENSPMEG00000000587	lsm7	94	93.137	Poecilia_mexicana
ENSMOCG00000016925	Lsm7	78	76.543	ENSPREG00000016718	lsm7	65	76.543	Poecilia_reticulata
ENSMOCG00000016925	Lsm7	71	95.890	ENSPPYG00000009348	-	50	95.890	Pongo_abelii
ENSMOCG00000016925	Lsm7	100	99.029	ENSPCOG00000017177	LSM7	100	99.029	Propithecus_coquereli
ENSMOCG00000016925	Lsm7	100	93.204	ENSPNYG00000006938	lsm7	100	93.204	Pundamilia_nyererei
ENSMOCG00000016925	Lsm7	100	94.175	ENSPNAG00000010141	lsm7	100	94.175	Pygocentrus_nattereri
ENSMOCG00000016925	Lsm7	100	99.029	ENSRNOG00000019552	Lsm7	100	99.029	Rattus_norvegicus
ENSMOCG00000016925	Lsm7	100	99.029	ENSRBIG00000035978	LSM7	100	99.029	Rhinopithecus_bieti
ENSMOCG00000016925	Lsm7	100	99.029	ENSRROG00000034044	LSM7	100	99.029	Rhinopithecus_roxellana
ENSMOCG00000016925	Lsm7	86	47.826	YNL147W	-	80	47.826	Saccharomyces_cerevisiae
ENSMOCG00000016925	Lsm7	100	99.029	ENSSBOG00000034899	LSM7	100	99.029	Saimiri_boliviensis_boliviensis
ENSMOCG00000016925	Lsm7	100	94.175	ENSSFOG00015006728	lsm7	100	94.175	Scleropages_formosus
ENSMOCG00000016925	Lsm7	100	92.233	ENSSMAG00000004195	lsm7	93	94.059	Scophthalmus_maximus
ENSMOCG00000016925	Lsm7	100	94.175	ENSSDUG00000001863	lsm7	100	94.175	Seriola_dumerili
ENSMOCG00000016925	Lsm7	100	94.175	ENSSLDG00000016339	lsm7	100	94.175	Seriola_lalandi_dorsalis
ENSMOCG00000016925	Lsm7	100	94.175	ENSSPAG00000015221	lsm7	100	94.175	Stegastes_partitus
ENSMOCG00000016925	Lsm7	98	99.010	ENSSSCG00000013463	LSM7	99	99.010	Sus_scrofa
ENSMOCG00000016925	Lsm7	98	96.040	ENSTGUG00000000067	LSM7	100	96.040	Taeniopygia_guttata
ENSMOCG00000016925	Lsm7	100	94.175	ENSTRUG00000022913	lsm7	100	94.175	Takifugu_rubripes
ENSMOCG00000016925	Lsm7	100	94.175	ENSTNIG00000015525	lsm7	100	94.175	Tetraodon_nigroviridis
ENSMOCG00000016925	Lsm7	68	87.143	ENSTBEG00000016602	LSM7	100	87.143	Tupaia_belangeri
ENSMOCG00000016925	Lsm7	100	96.117	ENSUAMG00000000912	LSM7	86	96.117	Ursus_americanus
ENSMOCG00000016925	Lsm7	98	98.020	ENSUMAG00000006556	LSM7	79	98.020	Ursus_maritimus
ENSMOCG00000016925	Lsm7	69	97.183	ENSVVUG00000002640	LSM7	65	97.183	Vulpes_vulpes
ENSMOCG00000016925	Lsm7	98	96.040	ENSXETG00000022166	lsm7	100	96.040	Xenopus_tropicalis
ENSMOCG00000016925	Lsm7	99	94.118	ENSXCOG00000002572	lsm7	100	94.118	Xiphophorus_couchianus
ENSMOCG00000016925	Lsm7	100	95.146	ENSXMAG00000018630	lsm7	100	95.146	Xiphophorus_maculatus