EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMOCG00000017759 (Gene tree)
Gene ID: 101988354
Gene Symbol: Trub1
Alias: 2610009I02Rik|9030425C13Rik
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Microtus_ochrogaster
Status: putative
Strand: Plus strand
Length: 40336 bases
Position: chr8:84855339-84895674
Accession: 101988354
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMOCP00000019921	TruB_N	PF01509.18	1.3e-50	1	1
ENSMOCP00000019923	TruB_N	PF01509.18	2.6e-39	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMOCT00000023736	-	1438	XM_005352539	ENSMOCP00000019921	331 (aa)	XP_005352596	UPI00038C0E23
ENSMOCT00000023738	-	987	-	ENSMOCP00000019923	328 (aa)	-	-

Gene Model

Click here to download ENSMOCG00000017759's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000017759's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMOCG00000017759	Trub1	59	34.171	ENSMOCG00000014291	Trub2	65	34.171

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMOCG00000017759	Trub1	99	79.083	ENSG00000165832	TRUB1	93	81.763	Homo_sapiens
ENSMOCG00000017759	Trub1	74	68.443	ENSAPOG00000020565	trub1	89	68.443	Acanthochromis_polyacanthus
ENSMOCG00000017759	Trub1	91	86.799	ENSAMEG00000014931	TRUB1	93	83.180	Ailuropoda_melanoleuca
ENSMOCG00000017759	Trub1	74	62.810	ENSACIG00000003060	trub1	79	63.830	Amphilophus_citrinellus
ENSMOCG00000017759	Trub1	74	68.443	ENSAOCG00000017188	trub1	87	69.328	Amphiprion_ocellaris
ENSMOCG00000017759	Trub1	74	67.755	ENSAPEG00000015209	trub1	87	68.908	Amphiprion_percula
ENSMOCG00000017759	Trub1	73	68.595	ENSATEG00000023291	trub1	84	68.511	Anabas_testudineus
ENSMOCG00000017759	Trub1	83	72.364	ENSAPLG00000006808	TRUB1	95	72.727	Anas_platyrhynchos
ENSMOCG00000017759	Trub1	81	70.632	ENSACAG00000009282	TRUB1	93	70.656	Anolis_carolinensis
ENSMOCG00000017759	Trub1	91	87.667	ENSANAG00000022870	TRUB1	91	83.642	Aotus_nancymaae
ENSMOCG00000017759	Trub1	78	64.865	ENSACLG00000000823	trub1	90	65.873	Astatotilapia_calliptera
ENSMOCG00000017759	Trub1	83	64.364	ENSAMXG00000015845	trub1	87	66.023	Astyanax_mexicanus
ENSMOCG00000017759	Trub1	91	86.093	ENSBTAG00000012955	TRUB1	93	82.515	Bos_taurus
ENSMOCG00000017759	Trub1	91	87.708	ENSCJAG00000047815	TRUB1	91	83.692	Callithrix_jacchus
ENSMOCG00000017759	Trub1	89	88.176	ENSCAFG00000011688	TRUB1	93	83.486	Canis_familiaris
ENSMOCG00000017759	Trub1	91	87.375	ENSCAFG00020013237	TRUB1	93	83.486	Canis_lupus_dingo
ENSMOCG00000017759	Trub1	91	86.093	ENSCHIG00000020884	TRUB1	90	86.093	Capra_hircus
ENSMOCG00000017759	Trub1	91	87.043	ENSTSYG00000000446	TRUB1	86	87.043	Carlito_syrichta
ENSMOCG00000017759	Trub1	76	75.889	ENSCAPG00000017088	TRUB1	99	75.889	Cavia_aperea
ENSMOCG00000017759	Trub1	68	75.410	ENSCPOG00000040236	-	100	76.639	Cavia_porcellus
ENSMOCG00000017759	Trub1	69	79.476	ENSCPOG00000030129	-	86	79.039	Cavia_porcellus
ENSMOCG00000017759	Trub1	91	87.043	ENSCCAG00000028842	TRUB1	92	82.622	Cebus_capucinus
ENSMOCG00000017759	Trub1	90	87.584	ENSCATG00000033431	TRUB1	91	83.077	Cercocebus_atys
ENSMOCG00000017759	Trub1	68	77.869	ENSCLAG00000008664	TRUB1	100	77.869	Chinchilla_lanigera
ENSMOCG00000017759	Trub1	90	87.584	ENSCSAG00000004891	TRUB1	91	83.077	Chlorocebus_sabaeus
ENSMOCG00000017759	Trub1	90	72.241	ENSCHOG00000011931	TRUB1	93	70.245	Choloepus_hoffmanni
ENSMOCG00000017759	Trub1	82	76.103	ENSCPBG00000003051	TRUB1	91	75.379	Chrysemys_picta_bellii
ENSMOCG00000017759	Trub1	90	87.584	ENSCANG00000029445	TRUB1	91	83.077	Colobus_angolensis_palliatus
ENSMOCG00000017759	Trub1	77	94.118	ENSCGRG00001016772	-	100	79.758	Cricetulus_griseus_chok1gshd
ENSMOCG00000017759	Trub1	85	85.409	ENSCGRG00001010322	-	86	80.060	Cricetulus_griseus_chok1gshd
ENSMOCG00000017759	Trub1	100	86.103	ENSCGRG00000010806	Trub1	100	89.728	Cricetulus_griseus_crigri
ENSMOCG00000017759	Trub1	74	65.041	ENSCSEG00000011261	trub1	92	59.364	Cynoglossus_semilaevis
ENSMOCG00000017759	Trub1	77	66.535	ENSCVAG00000008791	trub1	76	66.397	Cyprinodon_variegatus
ENSMOCG00000017759	Trub1	80	67.045	ENSDARG00000053805	trub1	88	67.315	Danio_rerio
ENSMOCG00000017759	Trub1	89	83.051	ENSDNOG00000001069	TRUB1	80	83.274	Dasypus_novemcinctus
ENSMOCG00000017759	Trub1	95	82.569	ENSDORG00000010431	Trub1	87	87.086	Dipodomys_ordii
ENSMOCG00000017759	Trub1	68	86.620	ENSETEG00000009183	TRUB1	60	89.231	Echinops_telfairi
ENSMOCG00000017759	Trub1	90	86.622	ENSEASG00005014739	TRUB1	93	82.822	Equus_asinus_asinus
ENSMOCG00000017759	Trub1	90	86.622	ENSECAG00000007177	TRUB1	93	82.822	Equus_caballus
ENSMOCG00000017759	Trub1	89	74.490	ENSEEUG00000013993	TRUB1	78	73.665	Erinaceus_europaeus
ENSMOCG00000017759	Trub1	74	69.106	ENSELUG00000000502	trub1	84	69.874	Esox_lucius
ENSMOCG00000017759	Trub1	91	87.333	ENSFCAG00000031927	TRUB1	99	79.827	Felis_catus
ENSMOCG00000017759	Trub1	70	76.623	ENSFALG00000002232	TRUB1	89	76.623	Ficedula_albicollis
ENSMOCG00000017759	Trub1	63	81.696	ENSFDAG00000008140	TRUB1	91	83.710	Fukomys_damarensis
ENSMOCG00000017759	Trub1	74	65.714	ENSFHEG00000004016	trub1	82	65.966	Fundulus_heteroclitus
ENSMOCG00000017759	Trub1	82	72.059	ENSGALG00000009091	TRUB1	95	71.498	Gallus_gallus
ENSMOCG00000017759	Trub1	73	64.050	ENSGAFG00000009193	trub1	82	64.255	Gambusia_affinis
ENSMOCG00000017759	Trub1	59	67.010	ENSGACG00000015387	trub1	95	67.010	Gasterosteus_aculeatus
ENSMOCG00000017759	Trub1	87	72.822	ENSGAGG00000009758	TRUB1	75	76.136	Gopherus_agassizii
ENSMOCG00000017759	Trub1	99	78.797	ENSGGOG00000004583	TRUB1	93	81.763	Gorilla_gorilla
ENSMOCG00000017759	Trub1	85	61.837	ENSHBUG00000016787	trub1	90	65.873	Haplochromis_burtoni
ENSMOCG00000017759	Trub1	100	75.358	ENSHGLG00000015314	TRUB1	93	79.141	Heterocephalus_glaber_female
ENSMOCG00000017759	Trub1	59	88.660	ENSHGLG00100009183	TRUB1	100	79.747	Heterocephalus_glaber_male
ENSMOCG00000017759	Trub1	74	67.073	ENSHCOG00000017877	trub1	87	67.364	Hippocampus_comes
ENSMOCG00000017759	Trub1	83	64.855	ENSIPUG00000017559	trub1	92	66.154	Ictalurus_punctatus
ENSMOCG00000017759	Trub1	91	84.768	ENSSTOG00000003641	TRUB1	100	79.822	Ictidomys_tridecemlineatus
ENSMOCG00000017759	Trub1	90	85.859	ENSJJAG00000011800	Trub1	100	79.118	Jaculus_jaculus
ENSMOCG00000017759	Trub1	76	64.093	ENSKMAG00000006232	trub1	86	66.807	Kryptolebias_marmoratus
ENSMOCG00000017759	Trub1	80	63.910	ENSLBEG00000026722	trub1	89	64.479	Labrus_bergylta
ENSMOCG00000017759	Trub1	84	70.609	ENSLACG00000014885	TRUB1	87	72.308	Latimeria_chalumnae
ENSMOCG00000017759	Trub1	82	69.118	ENSLOCG00000012979	trub1	86	70.472	Lepisosteus_oculatus
ENSMOCG00000017759	Trub1	89	80.667	ENSLAFG00000015452	TRUB1	82	82.578	Loxodonta_africana
ENSMOCG00000017759	Trub1	90	87.248	ENSMFAG00000031767	TRUB1	91	82.769	Macaca_fascicularis
ENSMOCG00000017759	Trub1	90	87.584	ENSMMUG00000001902	TRUB1	91	83.077	Macaca_mulatta
ENSMOCG00000017759	Trub1	90	83.390	ENSMNEG00000044646	TRUB1	91	79.193	Macaca_nemestrina
ENSMOCG00000017759	Trub1	91	87.333	ENSMLEG00000042655	TRUB1	91	83.077	Mandrillus_leucophaeus
ENSMOCG00000017759	Trub1	78	64.865	ENSMZEG00005024095	trub1	90	65.873	Maylandia_zebra
ENSMOCG00000017759	Trub1	82	71.691	ENSMGAG00000011135	TRUB1	91	71.591	Meleagris_gallopavo
ENSMOCG00000017759	Trub1	90	91.639	ENSMAUG00000011101	Trub1	100	86.686	Mesocricetus_auratus
ENSMOCG00000017759	Trub1	91	86.755	ENSMICG00000016324	TRUB1	93	81.818	Microcebus_murinus
ENSMOCG00000017759	Trub1	86	79.371	ENSMODG00000009676	TRUB1	77	78.929	Monodelphis_domestica
ENSMOCG00000017759	Trub1	100	82.840	MGP_CAROLIEiJ_G0023100	Trub1	100	82.249	Mus_caroli
ENSMOCG00000017759	Trub1	100	82.249	ENSMUSG00000025086	Trub1	100	81.953	Mus_musculus
ENSMOCG00000017759	Trub1	100	82.840	MGP_PahariEiJ_G0014588	Trub1	100	82.840	Mus_pahari
ENSMOCG00000017759	Trub1	100	82.544	MGP_SPRETEiJ_G0024021	Trub1	100	82.249	Mus_spretus
ENSMOCG00000017759	Trub1	91	88.040	ENSMPUG00000003556	TRUB1	91	84.000	Mustela_putorius_furo
ENSMOCG00000017759	Trub1	97	81.308	ENSMLUG00000017686	TRUB1	99	78.761	Myotis_lucifugus
ENSMOCG00000017759	Trub1	100	79.885	ENSNGAG00000018682	Trub1	100	79.885	Nannospalax_galili
ENSMOCG00000017759	Trub1	74	66.531	ENSNBRG00000023393	trub1	85	67.647	Neolamprologus_brichardi
ENSMOCG00000017759	Trub1	90	86.577	ENSNLEG00000016345	TRUB1	91	82.154	Nomascus_leucogenys
ENSMOCG00000017759	Trub1	61	87.562	ENSMEUG00000006603	TRUB1	72	87.179	Notamacropus_eugenii
ENSMOCG00000017759	Trub1	91	81.788	ENSOPRG00000009371	TRUB1	100	75.872	Ochotona_princeps
ENSMOCG00000017759	Trub1	100	73.066	ENSODEG00000010854	TRUB1	81	82.206	Octodon_degus
ENSMOCG00000017759	Trub1	85	61.131	ENSONIG00000007249	trub1	92	65.079	Oreochromis_niloticus
ENSMOCG00000017759	Trub1	83	76.277	ENSOANG00000001556	TRUB1	87	76.136	Ornithorhynchus_anatinus
ENSMOCG00000017759	Trub1	91	81.126	ENSOCUG00000009456	TRUB1	94	77.607	Oryctolagus_cuniculus
ENSMOCG00000017759	Trub1	74	67.480	ENSORLG00000029719	trub1	86	67.782	Oryzias_latipes
ENSMOCG00000017759	Trub1	74	67.073	ENSORLG00020016767	trub1	84	67.364	Oryzias_latipes_hni
ENSMOCG00000017759	Trub1	79	64.751	ENSORLG00015014728	trub1	86	68.201	Oryzias_latipes_hsok
ENSMOCG00000017759	Trub1	79	66.412	ENSOMEG00000014556	trub1	83	68.644	Oryzias_melastigma
ENSMOCG00000017759	Trub1	91	87.417	ENSOGAG00000015895	TRUB1	91	85.220	Otolemur_garnettii
ENSMOCG00000017759	Trub1	89	84.158	ENSOARG00000015591	TRUB1	82	84.375	Ovis_aries
ENSMOCG00000017759	Trub1	99	79.083	ENSPPAG00000043645	TRUB1	93	81.763	Pan_paniscus
ENSMOCG00000017759	Trub1	91	87.000	ENSPPRG00000007096	TRUB1	99	79.539	Panthera_pardus
ENSMOCG00000017759	Trub1	91	87.333	ENSPTIG00000006378	TRUB1	99	79.827	Panthera_tigris_altaica
ENSMOCG00000017759	Trub1	99	79.083	ENSPTRG00000002964	TRUB1	93	81.763	Pan_troglodytes
ENSMOCG00000017759	Trub1	90	87.584	ENSPANG00000020712	TRUB1	91	83.077	Papio_anubis
ENSMOCG00000017759	Trub1	52	68.208	ENSPKIG00000003852	trub1	74	68.208	Paramormyrops_kingsleyae
ENSMOCG00000017759	Trub1	82	73.897	ENSPSIG00000012877	TRUB1	91	73.485	Pelodiscus_sinensis
ENSMOCG00000017759	Trub1	74	65.854	ENSPMGG00000000075	trub1	86	66.946	Periophthalmus_magnuspinnatus
ENSMOCG00000017759	Trub1	100	86.176	ENSPEMG00000011156	Trub1	100	86.176	Peromyscus_maniculatus_bairdii
ENSMOCG00000017759	Trub1	86	78.671	ENSPCIG00000009729	TRUB1	75	79.137	Phascolarctos_cinereus
ENSMOCG00000017759	Trub1	74	65.854	ENSPFOG00000009950	trub1	88	66.109	Poecilia_formosa
ENSMOCG00000017759	Trub1	79	62.921	ENSPLAG00000013855	trub1	84	66.109	Poecilia_latipinna
ENSMOCG00000017759	Trub1	80	62.879	ENSPMEG00000009064	trub1	92	63.035	Poecilia_mexicana
ENSMOCG00000017759	Trub1	74	66.667	ENSPREG00000003343	trub1	86	66.946	Poecilia_reticulata
ENSMOCG00000017759	Trub1	91	86.333	ENSPPYG00000002676	TRUB1	86	86.379	Pongo_abelii
ENSMOCG00000017759	Trub1	91	76.000	ENSPCAG00000008427	TRUB1	79	77.500	Procavia_capensis
ENSMOCG00000017759	Trub1	91	81.605	ENSPCOG00000024360	TRUB1	93	77.064	Propithecus_coquereli
ENSMOCG00000017759	Trub1	64	91.943	ENSPVAG00000007575	TRUB1	90	85.124	Pteropus_vampyrus
ENSMOCG00000017759	Trub1	78	64.865	ENSPNYG00000018614	trub1	90	65.873	Pundamilia_nyererei
ENSMOCG00000017759	Trub1	82	57.721	ENSPNAG00000006881	trub1	81	59.127	Pygocentrus_nattereri
ENSMOCG00000017759	Trub1	100	82.991	ENSRNOG00000017321	Trub1	100	83.578	Rattus_norvegicus
ENSMOCG00000017759	Trub1	99	70.201	ENSRBIG00000033423	TRUB1	91	73.846	Rhinopithecus_bieti
ENSMOCG00000017759	Trub1	99	79.083	ENSRROG00000033902	TRUB1	91	83.385	Rhinopithecus_roxellana
ENSMOCG00000017759	Trub1	91	87.375	ENSSBOG00000024237	TRUB1	91	83.385	Saimiri_boliviensis_boliviensis
ENSMOCG00000017759	Trub1	77	76.953	ENSSHAG00000009346	TRUB1	86	76.953	Sarcophilus_harrisii
ENSMOCG00000017759	Trub1	75	68.826	ENSSFOG00015022124	trub1	82	69.167	Scleropages_formosus
ENSMOCG00000017759	Trub1	74	67.347	ENSSMAG00000001020	trub1	85	68.067	Scophthalmus_maximus
ENSMOCG00000017759	Trub1	72	68.201	ENSSDUG00000016414	trub1	86	68.487	Seriola_dumerili
ENSMOCG00000017759	Trub1	72	68.619	ENSSLDG00000015486	trub1	86	68.908	Seriola_lalandi_dorsalis
ENSMOCG00000017759	Trub1	85	74.643	ENSSPUG00000001642	TRUB1	91	75.758	Sphenodon_punctatus
ENSMOCG00000017759	Trub1	78	66.409	ENSSPAG00000001217	trub1	90	67.063	Stegastes_partitus
ENSMOCG00000017759	Trub1	100	77.143	ENSSSCG00000010653	TRUB1	100	76.286	Sus_scrofa
ENSMOCG00000017759	Trub1	82	74.074	ENSTGUG00000010971	TRUB1	94	73.864	Taeniopygia_guttata
ENSMOCG00000017759	Trub1	76	72.332	ENSTBEG00000002880	TRUB1	99	72.332	Tupaia_belangeri
ENSMOCG00000017759	Trub1	65	90.741	ENSTTRG00000005767	TRUB1	100	81.679	Tursiops_truncatus
ENSMOCG00000017759	Trub1	91	88.040	ENSUAMG00000024876	TRUB1	93	84.308	Ursus_americanus
ENSMOCG00000017759	Trub1	89	88.136	ENSUMAG00000002411	TRUB1	99	81.250	Ursus_maritimus
ENSMOCG00000017759	Trub1	91	86.093	ENSVPAG00000005507	TRUB1	93	82.209	Vicugna_pacos
ENSMOCG00000017759	Trub1	89	88.176	ENSVVUG00000010085	TRUB1	78	84.259	Vulpes_vulpes
ENSMOCG00000017759	Trub1	82	65.809	ENSXETG00000023828	trub1	95	65.909	Xenopus_tropicalis
ENSMOCG00000017759	Trub1	73	64.315	ENSXCOG00000017847	trub1	83	64.530	Xiphophorus_couchianus
ENSMOCG00000017759	Trub1	79	62.692	ENSXMAG00000014701	trub1	90	62.846	Xiphophorus_maculatus