EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMOCG00000017833 (Gene tree)
Gene ID: 101984856
Gene Symbol: Smn1
Alias: SMN
Full Name: survival motor neuron protein
Gene Type: protein_coding
Species: Microtus_ochrogaster
Status: putative
Strand: Minus strand
Length: 10953 bases
Position: chr19:177297-188249
Accession: 101984856
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMOCP00000020037	SMN	PF06003.12	4.3e-106	1	1
ENSMOCP00000020041	SMN	PF06003.12	5.2e-102	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMOCT00000023858	-	870	-	ENSMOCP00000020041	289 (aa)	-	-
ENSMOCT00000023854	-	1164	XM_005356420	ENSMOCP00000020037	287 (aa)	XP_005356477	UPI00038BD644
ENSMOCT00000023857	-	120	-	ENSMOCP00000020040	39 (aa)	-	-

Gene Model

Click here to download ENSMOCG00000017833's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000017833's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMOCG00000017833	Smn1	97	81.851	ENSG00000172062	SMN1	99	81.295	Homo_sapiens
ENSMOCG00000017833	Smn1	97	81.851	ENSG00000205571	SMN2	99	81.295	Homo_sapiens
ENSMOCG00000017833	Smn1	93	51.852	ENSAPOG00000011324	smn1	94	53.091	Acanthochromis_polyacanthus
ENSMOCG00000017833	Smn1	97	82.270	ENSAMEG00000003316	-	96	82.069	Ailuropoda_melanoleuca
ENSMOCG00000017833	Smn1	89	50.000	ENSACIG00000019772	-	97	50.379	Amphilophus_citrinellus
ENSMOCG00000017833	Smn1	93	51.852	ENSAOCG00000024444	smn1	94	52.727	Amphiprion_ocellaris
ENSMOCG00000017833	Smn1	93	52.222	ENSAPEG00000016504	smn1	94	53.091	Amphiprion_percula
ENSMOCG00000017833	Smn1	90	53.731	ENSATEG00000002182	smn1	79	55.133	Anabas_testudineus
ENSMOCG00000017833	Smn1	68	54.315	ENSAPLG00000010912	-	97	54.315	Anas_platyrhynchos
ENSMOCG00000017833	Smn1	99	54.082	ENSACAG00000010017	-	95	54.317	Anolis_carolinensis
ENSMOCG00000017833	Smn1	99	79.592	ENSANAG00000032133	-	99	79.592	Aotus_nancymaae
ENSMOCG00000017833	Smn1	93	49.624	ENSACLG00000007308	smn1	92	53.333	Astatotilapia_calliptera
ENSMOCG00000017833	Smn1	93	48.889	ENSAMXG00000013884	smn1	95	51.095	Astyanax_mexicanus
ENSMOCG00000017833	Smn1	97	77.419	ENSBTAG00000005743	SMN2	99	75.175	Bos_taurus
ENSMOCG00000017833	Smn1	97	79.787	ENSCJAG00000016290	-	99	79.181	Callithrix_jacchus
ENSMOCG00000017833	Smn1	100	83.103	ENSCAFG00000007812	SMN	100	83.103	Canis_familiaris
ENSMOCG00000017833	Smn1	99	83.333	ENSCAFG00020019229	-	93	83.333	Canis_lupus_dingo
ENSMOCG00000017833	Smn1	97	78.292	ENSCHIG00000015559	-	100	75.338	Capra_hircus
ENSMOCG00000017833	Smn1	99	82.699	ENSTSYG00000012058	-	99	82.699	Carlito_syrichta
ENSMOCG00000017833	Smn1	76	64.317	ENSCAPG00000011021	-	100	63.596	Cavia_aperea
ENSMOCG00000017833	Smn1	100	76.871	ENSCPOG00000036973	-	100	76.190	Cavia_porcellus
ENSMOCG00000017833	Smn1	99	76.792	ENSCPOG00000012328	-	99	76.109	Cavia_porcellus
ENSMOCG00000017833	Smn1	97	80.714	ENSCCAG00000018127	-	99	80.069	Cebus_capucinus
ENSMOCG00000017833	Smn1	97	81.851	ENSCATG00000037002	-	99	81.295	Cercocebus_atys
ENSMOCG00000017833	Smn1	100	74.832	ENSCLAG00000000284	-	100	74.832	Chinchilla_lanigera
ENSMOCG00000017833	Smn1	97	83.333	ENSCSAG00000015688	-	99	82.594	Chlorocebus_sabaeus
ENSMOCG00000017833	Smn1	86	69.323	ENSCHOG00000007346	-	67	76.647	Choloepus_hoffmanni
ENSMOCG00000017833	Smn1	98	57.241	ENSCPBG00000010968	-	99	56.296	Chrysemys_picta_bellii
ENSMOCG00000017833	Smn1	97	82.562	ENSCANG00000038242	-	100	82.014	Colobus_angolensis_palliatus
ENSMOCG00000017833	Smn1	95	76.071	ENSCANG00000033324	-	95	76.071	Colobus_angolensis_palliatus
ENSMOCG00000017833	Smn1	100	94.077	ENSCGRG00001017959	-	100	94.077	Cricetulus_griseus_chok1gshd
ENSMOCG00000017833	Smn1	100	72.822	ENSCGRG00001016998	-	100	73.519	Cricetulus_griseus_chok1gshd
ENSMOCG00000017833	Smn1	100	94.077	ENSCGRG00000007698	Smn1	100	94.077	Cricetulus_griseus_crigri
ENSMOCG00000017833	Smn1	93	48.239	ENSCSEG00000015227	smn1	97	50.890	Cynoglossus_semilaevis
ENSMOCG00000017833	Smn1	93	53.237	ENSCVAG00000007498	smn1	95	53.214	Cyprinodon_variegatus
ENSMOCG00000017833	Smn1	94	51.625	ENSDARG00000018494	smn1	96	51.986	Danio_rerio
ENSMOCG00000017833	Smn1	78	67.699	ENSDNOG00000045949	-	90	67.299	Dasypus_novemcinctus
ENSMOCG00000017833	Smn1	83	77.686	ENSDNOG00000007283	-	100	77.686	Dasypus_novemcinctus
ENSMOCG00000017833	Smn1	100	74.744	ENSDORG00000007082	Smn1	98	76.619	Dipodomys_ordii
ENSMOCG00000017833	Smn1	71	68.447	ENSETEG00000001406	-	93	67.016	Echinops_telfairi
ENSMOCG00000017833	Smn1	94	36.634	ENSEBUG00000011902	smn1	60	43.103	Eptatretus_burgeri
ENSMOCG00000017833	Smn1	90	76.806	ENSEASG00005018000	-	89	78.968	Equus_asinus_asinus
ENSMOCG00000017833	Smn1	100	82.131	ENSECAG00000015215	-	100	82.131	Equus_caballus
ENSMOCG00000017833	Smn1	86	74.900	ENSEEUG00000015777	-	100	74.900	Erinaceus_europaeus
ENSMOCG00000017833	Smn1	92	55.109	ENSELUG00000018067	smn1	94	53.480	Esox_lucius
ENSMOCG00000017833	Smn1	100	80.690	ENSFCAG00000028292	SMN	100	80.690	Felis_catus
ENSMOCG00000017833	Smn1	90	61.069	ENSFALG00000012320	-	91	60.000	Ficedula_albicollis
ENSMOCG00000017833	Smn1	100	75.839	ENSFDAG00000017683	-	100	75.839	Fukomys_damarensis
ENSMOCG00000017833	Smn1	61	55.682	ENSFHEG00000018508	smn1	96	52.364	Fundulus_heteroclitus
ENSMOCG00000017833	Smn1	96	47.826	ENSGMOG00000017279	smn1	96	46.377	Gadus_morhua
ENSMOCG00000017833	Smn1	93	59.480	ENSGALG00000002430	SMN	95	58.582	Gallus_gallus
ENSMOCG00000017833	Smn1	92	52.206	ENSGAFG00000009501	smn1	94	53.137	Gambusia_affinis
ENSMOCG00000017833	Smn1	92	51.481	ENSGACG00000010584	smn1	91	51.825	Gasterosteus_aculeatus
ENSMOCG00000017833	Smn1	98	57.931	ENSGAGG00000011374	-	99	57.241	Gopherus_agassizii
ENSMOCG00000017833	Smn1	95	36.585	ENSGAGG00000013639	-	54	52.632	Gopherus_agassizii
ENSMOCG00000017833	Smn1	95	69.928	ENSGGOG00000003872	-	100	70.036	Gorilla_gorilla
ENSMOCG00000017833	Smn1	63	79.781	ENSGGOG00000026704	-	91	78.866	Gorilla_gorilla
ENSMOCG00000017833	Smn1	92	50.185	ENSHBUG00000013987	smn1	94	54.887	Haplochromis_burtoni
ENSMOCG00000017833	Smn1	99	77.931	ENSHGLG00000001018	-	98	77.931	Heterocephalus_glaber_female
ENSMOCG00000017833	Smn1	100	74.403	ENSHGLG00000001905	-	100	74.403	Heterocephalus_glaber_female
ENSMOCG00000017833	Smn1	99	77.931	ENSHGLG00100011252	-	98	77.931	Heterocephalus_glaber_male
ENSMOCG00000017833	Smn1	96	74.733	ENSHGLG00100018676	-	100	74.733	Heterocephalus_glaber_male
ENSMOCG00000017833	Smn1	90	51.648	ENSHCOG00000017136	smn1	88	52.091	Hippocampus_comes
ENSMOCG00000017833	Smn1	92	52.075	ENSIPUG00000012580	smn1	86	51.838	Ictalurus_punctatus
ENSMOCG00000017833	Smn1	91	85.171	ENSSTOG00000012288	-	100	83.696	Ictidomys_tridecemlineatus
ENSMOCG00000017833	Smn1	60	57.225	ENSJJAG00000014853	-	89	61.494	Jaculus_jaculus
ENSMOCG00000017833	Smn1	92	54.444	ENSKMAG00000007239	smn1	96	53.053	Kryptolebias_marmoratus
ENSMOCG00000017833	Smn1	93	52.399	ENSLBEG00000022550	smn1	94	54.074	Labrus_bergylta
ENSMOCG00000017833	Smn1	93	36.071	ENSLACG00000009808	-	94	36.111	Latimeria_chalumnae
ENSMOCG00000017833	Smn1	92	52.434	ENSLOCG00000011339	smn1	94	50.735	Lepisosteus_oculatus
ENSMOCG00000017833	Smn1	100	78.912	ENSLAFG00000003425	-	96	78.912	Loxodonta_africana
ENSMOCG00000017833	Smn1	97	83.688	ENSMFAG00000031523	SMN1	99	83.154	Macaca_fascicularis
ENSMOCG00000017833	Smn1	97	77.580	ENSMFAG00000008812	-	99	77.055	Macaca_fascicularis
ENSMOCG00000017833	Smn1	97	76.868	ENSMMUG00000030594	-	99	76.370	Macaca_mulatta
ENSMOCG00000017833	Smn1	97	83.688	ENSMMUG00000020214	SMN1	99	83.154	Macaca_mulatta
ENSMOCG00000017833	Smn1	97	83.333	ENSMNEG00000035094	-	99	83.154	Macaca_nemestrina
ENSMOCG00000017833	Smn1	76	67.873	ENSMNEG00000036423	-	80	68.932	Macaca_nemestrina
ENSMOCG00000017833	Smn1	96	82.796	ENSMLEG00000041902	-	99	82.437	Mandrillus_leucophaeus
ENSMOCG00000017833	Smn1	92	51.852	ENSMAMG00000011034	smn1	94	52.593	Mastacembelus_armatus
ENSMOCG00000017833	Smn1	92	51.698	ENSMZEG00005013634	smn1	94	54.887	Maylandia_zebra
ENSMOCG00000017833	Smn1	68	54.082	ENSMGAG00000008889	-	95	52.551	Meleagris_gallopavo
ENSMOCG00000017833	Smn1	100	91.986	ENSMAUG00000010262	Smn1	100	91.986	Mesocricetus_auratus
ENSMOCG00000017833	Smn1	96	69.039	ENSMICG00000034708	-	99	80.682	Microcebus_murinus
ENSMOCG00000017833	Smn1	93	49.064	ENSMMOG00000005504	smn1	94	50.000	Mola_mola
ENSMOCG00000017833	Smn1	100	64.505	ENSMODG00000001436	-	97	65.157	Monodelphis_domestica
ENSMOCG00000017833	Smn1	92	52.593	ENSMALG00000008025	smn1	94	52.593	Monopterus_albus
ENSMOCG00000017833	Smn1	100	91.667	MGP_CAROLIEiJ_G0018836	Smn1	100	92.014	Mus_caroli
ENSMOCG00000017833	Smn1	100	91.667	ENSMUSG00000021645	Smn1	100	92.014	Mus_musculus
ENSMOCG00000017833	Smn1	100	87.456	MGP_PahariEiJ_G0015911	Smn1	100	88.850	Mus_pahari
ENSMOCG00000017833	Smn1	100	90.972	MGP_SPRETEiJ_G0019718	Smn1	100	91.319	Mus_spretus
ENSMOCG00000017833	Smn1	95	83.696	ENSMPUG00000014470	-	98	83.696	Mustela_putorius_furo
ENSMOCG00000017833	Smn1	97	80.969	ENSMLUG00000010603	-	95	80.135	Myotis_lucifugus
ENSMOCG00000017833	Smn1	100	84.429	ENSNGAG00000019833	Smn1	100	84.429	Nannospalax_galili
ENSMOCG00000017833	Smn1	92	50.000	ENSNBRG00000023000	smn1	94	54.478	Neolamprologus_brichardi
ENSMOCG00000017833	Smn1	99	80.479	ENSNLEG00000004454	-	99	80.576	Nomascus_leucogenys
ENSMOCG00000017833	Smn1	78	61.842	ENSMEUG00000011393	-	99	61.842	Notamacropus_eugenii
ENSMOCG00000017833	Smn1	86	76.285	ENSOPRG00000002015	-	100	77.075	Ochotona_princeps
ENSMOCG00000017833	Smn1	95	77.455	ENSODEG00000015976	-	97	77.536	Octodon_degus
ENSMOCG00000017833	Smn1	93	51.852	ENSONIG00000011799	smn1	95	54.613	Oreochromis_niloticus
ENSMOCG00000017833	Smn1	95	61.011	ENSOANG00000001626	-	99	61.404	Ornithorhynchus_anatinus
ENSMOCG00000017833	Smn1	99	72.696	ENSOCUG00000025183	-	99	72.696	Oryctolagus_cuniculus
ENSMOCG00000017833	Smn1	99	74.150	ENSOCUG00000026649	-	99	75.170	Oryctolagus_cuniculus
ENSMOCG00000017833	Smn1	100	78.694	ENSOCUG00000017097	-	99	78.694	Oryctolagus_cuniculus
ENSMOCG00000017833	Smn1	92	50.000	ENSORLG00000010552	smn1	94	53.532	Oryzias_latipes
ENSMOCG00000017833	Smn1	92	53.585	ENSORLG00020007936	smn1	93	53.208	Oryzias_latipes_hni
ENSMOCG00000017833	Smn1	92	50.000	ENSORLG00015022425	smn1	94	52.330	Oryzias_latipes_hsok
ENSMOCG00000017833	Smn1	93	49.813	ENSOMEG00000007824	smn1	94	55.019	Oryzias_melastigma
ENSMOCG00000017833	Smn1	92	70.956	ENSOGAG00000031414	-	100	69.444	Otolemur_garnettii
ENSMOCG00000017833	Smn1	95	76.277	ENSOARG00000005425	-	100	74.818	Ovis_aries
ENSMOCG00000017833	Smn1	97	81.495	ENSPPAG00000036640	-	99	80.935	Pan_paniscus
ENSMOCG00000017833	Smn1	100	81.034	ENSPPRG00000005575	-	100	81.034	Panthera_pardus
ENSMOCG00000017833	Smn1	100	81.100	ENSPTIG00000007745	-	100	81.100	Panthera_tigris_altaica
ENSMOCG00000017833	Smn1	97	80.634	ENSPTRG00000016955	-	99	80.071	Pan_troglodytes
ENSMOCG00000017833	Smn1	99	82.594	ENSPANG00000013601	-	99	82.594	Papio_anubis
ENSMOCG00000017833	Smn1	95	76.895	ENSPANG00000000253	-	98	76.736	Papio_anubis
ENSMOCG00000017833	Smn1	92	49.057	ENSPKIG00000011096	smn1	97	51.282	Paramormyrops_kingsleyae
ENSMOCG00000017833	Smn1	93	55.282	ENSPSIG00000014787	-	90	53.873	Pelodiscus_sinensis
ENSMOCG00000017833	Smn1	93	47.653	ENSPMGG00000012285	smn1	94	49.618	Periophthalmus_magnuspinnatus
ENSMOCG00000017833	Smn1	97	40.972	ENSPMAG00000005004	smn1	96	41.404	Petromyzon_marinus
ENSMOCG00000017833	Smn1	98	66.899	ENSPCIG00000025764	-	99	66.899	Phascolarctos_cinereus
ENSMOCG00000017833	Smn1	92	53.676	ENSPFOG00000007786	smn1	94	53.875	Poecilia_formosa
ENSMOCG00000017833	Smn1	92	54.044	ENSPLAG00000012071	smn1	94	54.244	Poecilia_latipinna
ENSMOCG00000017833	Smn1	92	53.676	ENSPMEG00000017085	smn1	94	53.875	Poecilia_mexicana
ENSMOCG00000017833	Smn1	92	53.309	ENSPREG00000005824	smn1	94	53.650	Poecilia_reticulata
ENSMOCG00000017833	Smn1	86	54.217	ENSPPYG00000019189	-	99	54.217	Pongo_abelii
ENSMOCG00000017833	Smn1	92	80.150	ENSPPYG00000015533	-	97	80.150	Pongo_abelii
ENSMOCG00000017833	Smn1	92	76.753	ENSPCAG00000004187	-	100	76.103	Procavia_capensis
ENSMOCG00000017833	Smn1	90	63.774	ENSPCOG00000022307	-	90	75.610	Propithecus_coquereli
ENSMOCG00000017833	Smn1	97	82.500	ENSPVAG00000005977	-	100	81.229	Pteropus_vampyrus
ENSMOCG00000017833	Smn1	92	50.000	ENSPNYG00000014148	smn1	94	54.478	Pundamilia_nyererei
ENSMOCG00000017833	Smn1	97	48.780	ENSPNAG00000014007	smn1	86	49.823	Pygocentrus_nattereri
ENSMOCG00000017833	Smn1	100	90.972	ENSRNOG00000018067	Smn1	100	90.972	Rattus_norvegicus
ENSMOCG00000017833	Smn1	97	82.979	ENSRBIG00000037052	-	99	82.253	Rhinopithecus_bieti
ENSMOCG00000017833	Smn1	99	67.832	ENSRBIG00000036775	-	95	67.832	Rhinopithecus_bieti
ENSMOCG00000017833	Smn1	98	69.123	ENSRROG00000031088	-	97	69.123	Rhinopithecus_roxellana
ENSMOCG00000017833	Smn1	97	82.979	ENSRROG00000039399	-	99	82.437	Rhinopithecus_roxellana
ENSMOCG00000017833	Smn1	84	74.000	ENSSBOG00000020112	-	87	74.400	Saimiri_boliviensis_boliviensis
ENSMOCG00000017833	Smn1	97	78.214	ENSSBOG00000011665	-	99	78.694	Saimiri_boliviensis_boliviensis
ENSMOCG00000017833	Smn1	100	66.212	ENSSHAG00000001499	-	100	64.621	Sarcophilus_harrisii
ENSMOCG00000017833	Smn1	93	52.555	ENSSFOG00015015507	smn1	94	52.747	Scleropages_formosus
ENSMOCG00000017833	Smn1	93	50.181	ENSSMAG00000007922	smn1	94	52.364	Scophthalmus_maximus
ENSMOCG00000017833	Smn1	93	52.768	ENSSDUG00000018533	smn1	94	52.963	Seriola_dumerili
ENSMOCG00000017833	Smn1	93	53.137	ENSSLDG00000021135	smn1	94	53.333	Seriola_lalandi_dorsalis
ENSMOCG00000017833	Smn1	96	60.791	ENSSPUG00000000373	-	95	60.791	Sphenodon_punctatus
ENSMOCG00000017833	Smn1	93	53.704	ENSSPAG00000004345	smn1	94	52.536	Stegastes_partitus
ENSMOCG00000017833	Smn1	97	81.915	ENSSSCG00000016970	-	100	81.570	Sus_scrofa
ENSMOCG00000017833	Smn1	73	46.667	ENSSSCG00000033865	-	92	55.340	Sus_scrofa
ENSMOCG00000017833	Smn1	97	62.143	ENSSSCG00000029127	-	96	62.324	Sus_scrofa
ENSMOCG00000017833	Smn1	94	59.712	ENSTGUG00000001548	-	100	56.294	Taeniopygia_guttata
ENSMOCG00000017833	Smn1	93	47.253	ENSTRUG00000000736	smn	95	49.442	Takifugu_rubripes
ENSMOCG00000017833	Smn1	93	50.000	ENSTNIG00000009892	smn1	95	50.000	Tetraodon_nigroviridis
ENSMOCG00000017833	Smn1	66	81.250	ENSTBEG00000002399	-	93	81.250	Tupaia_belangeri
ENSMOCG00000017833	Smn1	97	76.950	ENSTTRG00000005080	-	100	75.932	Tursiops_truncatus
ENSMOCG00000017833	Smn1	63	81.522	ENSUAMG00000024947	-	70	81.250	Ursus_americanus
ENSMOCG00000017833	Smn1	97	82.979	ENSUMAG00000007842	-	74	82.759	Ursus_maritimus
ENSMOCG00000017833	Smn1	92	70.301	ENSVPAG00000009887	-	100	69.424	Vicugna_pacos
ENSMOCG00000017833	Smn1	100	83.103	ENSVVUG00000006934	-	100	83.103	Vulpes_vulpes
ENSMOCG00000017833	Smn1	95	54.035	ENSXETG00000018189	smn2	96	53.659	Xenopus_tropicalis
ENSMOCG00000017833	Smn1	100	36.213	ENSXETG00000004912	-	100	37.667	Xenopus_tropicalis
ENSMOCG00000017833	Smn1	93	52.920	ENSXMAG00000001521	smn1	95	53.114	Xiphophorus_maculatus