EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMOCG00000017860 (Gene tree)
Gene ID: 101983414
Gene Symbol: Zkscan3
Alias: 2810435N07Rik|Skz1|Zfp306|Zfp307
Full Name: zinc finger protein with KRAB and SCAN domains 3
Gene Type: protein_coding
Species: Microtus_ochrogaster
Status: putative
Strand: Minus strand
Length: 12514 bases
Position: chrJH996496.1:1559766-1572279
Accession: 101983414
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMOCP00000020074	zf-C2H2	PF00096.26	1.5e-43	1	7
ENSMOCP00000020074	zf-C2H2	PF00096.26	1.5e-43	2	7
ENSMOCP00000020074	zf-C2H2	PF00096.26	1.5e-43	3	7
ENSMOCP00000020074	zf-C2H2	PF00096.26	1.5e-43	4	7
ENSMOCP00000020074	zf-C2H2	PF00096.26	1.5e-43	5	7
ENSMOCP00000020074	zf-C2H2	PF00096.26	1.5e-43	6	7
ENSMOCP00000020074	zf-C2H2	PF00096.26	1.5e-43	7	7
ENSMOCP00000020074	zf-met	PF12874.7	1.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMOCT00000023891	-	2688	XM_005369920	ENSMOCP00000020074	552 (aa)	XP_005369977	UPI00038C4F6A

Gene Model

Click here to download ENSMOCG00000017860's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000017860's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMOCG00000017860	Zkscan3	56	36.275	ENSMOCG00000004895	Zfp64	71	36.275
ENSMOCG00000017860	Zkscan3	62	50.581	ENSMOCG00000003692	Zfp354a	99	50.581
ENSMOCG00000017860	Zkscan3	52	41.333	ENSMOCG00000021026	Prdm12	51	41.333
ENSMOCG00000017860	Zkscan3	66	53.448	ENSMOCG00000015466	Zfp13	80	53.448
ENSMOCG00000017860	Zkscan3	59	43.825	ENSMOCG00000017127	-	100	47.305
ENSMOCG00000017860	Zkscan3	54	52.402	ENSMOCG00000007908	Zfp560	73	52.402
ENSMOCG00000017860	Zkscan3	56	42.857	ENSMOCG00000016267	Prdm5	82	42.857
ENSMOCG00000017860	Zkscan3	59	41.597	ENSMOCG00000014774	Zfp961	97	41.597
ENSMOCG00000017860	Zkscan3	60	48.988	ENSMOCG00000017799	-	75	47.458
ENSMOCG00000017860	Zkscan3	60	42.745	ENSMOCG00000001762	-	98	47.059
ENSMOCG00000017860	Zkscan3	59	55.621	ENSMOCG00000002761	Zfp1	100	55.621
ENSMOCG00000017860	Zkscan3	63	48.819	ENSMOCG00000000365	-	99	41.475
ENSMOCG00000017860	Zkscan3	58	43.515	ENSMOCG00000007851	-	99	43.515
ENSMOCG00000017860	Zkscan3	59	49.789	ENSMOCG00000015724	Zfp26	85	49.789
ENSMOCG00000017860	Zkscan3	60	56.213	ENSMOCG00000002167	Zfp712	99	56.213
ENSMOCG00000017860	Zkscan3	61	47.436	ENSMOCG00000006946	Zfp53	97	47.436
ENSMOCG00000017860	Zkscan3	56	51.477	ENSMOCG00000021383	Zfp251	73	50.638

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMOCG00000017860	Zkscan3	100	96.383	ENSCGRG00001006591	Zkscan3	100	96.383	Cricetulus_griseus_chok1gshd
ENSMOCG00000017860	Zkscan3	100	96.383	ENSCGRG00000001582	Zkscan3	100	96.383	Cricetulus_griseus_crigri
ENSMOCG00000017860	Zkscan3	99	79.242	ENSJJAG00000004576	-	99	79.242	Jaculus_jaculus
ENSMOCG00000017860	Zkscan3	100	96.022	ENSMAUG00000009785	Zkscan3	100	96.022	Mesocricetus_auratus
ENSMOCG00000017860	Zkscan3	97	56.614	MGP_CAROLIEiJ_G0018274	Zkscan4	99	55.732	Mus_caroli
ENSMOCG00000017860	Zkscan3	97	72.131	ENSMUSG00000054931	Zkscan4	99	65.492	Mus_musculus
ENSMOCG00000017860	Zkscan3	100	94.394	ENSMUSG00000021327	Zkscan3	100	94.394	Mus_musculus
ENSMOCG00000017860	Zkscan3	97	59.779	MGP_PahariEiJ_G0019324	Zkscan4	99	59.594	Mus_pahari
ENSMOCG00000017860	Zkscan3	97	59.184	MGP_SPRETEiJ_G0019129	Zkscan4	99	58.998	Mus_spretus
ENSMOCG00000017860	Zkscan3	97	66.484	ENSPCAG00000000195	ZKSCAN4	99	66.484	Procavia_capensis
ENSMOCG00000017860	Zkscan3	97	69.597	ENSSSCG00000001204	ZKSCAN4	99	69.597	Sus_scrofa
ENSMOCG00000017860	Zkscan3	72	63.409	ENSTTRG00000015632	-	99	63.409	Tursiops_truncatus