EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSMOCG00000017893 (Gene tree)
Gene ID
101994750
Gene Symbol
Upf3b
Alias
5730594O13Rik|RENT3B|UPF3X
Full Name
UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type
protein_coding
Species
Microtus_ochrogaster
Status
putative
Strand
Plus strand
Length
22655 bases
Position
chrJH996472.1:120192-142846
Accession
101994750
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMOCP00000020121Smg4_UPF3PF03467.153.5e-5311
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMOCT00000023941-2398XM_005368880ENSMOCP00000020121483 (aa)XP_005368937UPI00038BFA30
Gene Model
Click here to download ENSMOCG00000017893's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000017893's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMOCG00000017893Upf3b8748.055ENSG00000169062UPF3A9340.966Homo_sapiens
ENSMOCG00000017893Upf3b10085.507ENSG00000125351UPF3B9693.269Homo_sapiens
ENSMOCG00000017893Upf3b10052.439ENSAPOG00000012775upf3b9951.626Acanthochromis_polyacanthus
ENSMOCG00000017893Upf3b8445.107ENSAMEG00000004259UPF3A9242.212Ailuropoda_melanoleuca
ENSMOCG00000017893Upf3b10086.804ENSAMEG00000000163UPF3B10086.598Ailuropoda_melanoleuca
ENSMOCG00000017893Upf3b10048.193ENSACIG00000013582upf3b9948.992Amphilophus_citrinellus
ENSMOCG00000017893Upf3b10051.220ENSAOCG00000000706upf3b9950.407Amphiprion_ocellaris
ENSMOCG00000017893Upf3b10052.236ENSAPEG00000005545upf3b9951.423Amphiprion_percula
ENSMOCG00000017893Upf3b9455.150ENSATEG00000018742upf3b9454.624Anabas_testudineus
ENSMOCG00000017893Upf3b9164.523ENSACAG00000003625UPF3B9962.168Anolis_carolinensis
ENSMOCG00000017893Upf3b10086.392ENSANAG00000021894-10092.937Aotus_nancymaae
ENSMOCG00000017893Upf3b5668.030ENSANAG00000033169-9367.286Aotus_nancymaae
ENSMOCG00000017893Upf3b10080.619ENSANAG00000025598-10087.611Aotus_nancymaae
ENSMOCG00000017893Upf3b9455.269ENSACLG00000001649upf3b9454.526Astatotilapia_calliptera
ENSMOCG00000017893Upf3b5659.717ENSAMXG00000000199upf3b8857.801Astyanax_mexicanus
ENSMOCG00000017893Upf3b6793.680ENSBTAG00000035615UPF3B10093.680Bos_taurus
ENSMOCG00000017893Upf3b10085.773ENSCJAG00000004975UPF3B10092.565Callithrix_jacchus
ENSMOCG00000017893Upf3b10085.921ENSCAFG00000018426UPF3B10085.714Canis_familiaris
ENSMOCG00000017893Upf3b8844.521ENSCAFG00000006504UPF3A8642.857Canis_familiaris
ENSMOCG00000017893Upf3b8844.521ENSCAFG00020014268UPF3A8442.857Canis_lupus_dingo
ENSMOCG00000017893Upf3b10081.159ENSCAFG00020004074UPF3B10089.744Canis_lupus_dingo
ENSMOCG00000017893Upf3b10085.155ENSCHIG00000000247-10084.948Capra_hircus
ENSMOCG00000017893Upf3b9157.991ENSCHIG00000011454-9854.701Capra_hircus
ENSMOCG00000017893Upf3b9885.232ENSCHIG00000018011-10093.309Capra_hircus
ENSMOCG00000017893Upf3b10084.472ENSTSYG00000014690UPF3B10087.319Carlito_syrichta
ENSMOCG00000017893Upf3b7068.056ENSCCAG00000021964-10068.056Cebus_capucinus
ENSMOCG00000017893Upf3b8548.558ENSCCAG00000018406UPF3A9340.546Cebus_capucinus
ENSMOCG00000017893Upf3b9953.958ENSCCAG00000029813-8765.926Cebus_capucinus
ENSMOCG00000017893Upf3b10085.300ENSCATG00000017506UPF3B10093.309Cercocebus_atys
ENSMOCG00000017893Upf3b10083.093ENSCLAG00000003260UPF3B10082.887Chinchilla_lanigera
ENSMOCG00000017893Upf3b10085.507ENSCSAG00000018348UPF3B10085.979Chlorocebus_sabaeus
ENSMOCG00000017893Upf3b9960.000ENSCPBG00000020685UPF3B9960.000Chrysemys_picta_bellii
ENSMOCG00000017893Upf3b7093.309ENSCANG00000029220UPF3B10093.309Colobus_angolensis_palliatus
ENSMOCG00000017893Upf3b10087.835ENSCGRG00001006858-10088.454Cricetulus_griseus_chok1gshd
ENSMOCG00000017893Upf3b7584.890ENSCGRG00001013643-9483.056Cricetulus_griseus_chok1gshd
ENSMOCG00000017893Upf3b8987.991ENSCGRG00000007627Upf3b10088.684Cricetulus_griseus_crigri
ENSMOCG00000017893Upf3b9351.515ENSCSEG00000002046upf3b9053.017Cynoglossus_semilaevis
ENSMOCG00000017893Upf3b9650.936ENSCVAG00000005030upf3b9951.660Cyprinodon_variegatus
ENSMOCG00000017893Upf3b9352.790ENSDARG00000000489upf3b9653.015Danio_rerio
ENSMOCG00000017893Upf3b10084.536ENSDNOG00000008665UPF3B10084.330Dasypus_novemcinctus
ENSMOCG00000017893Upf3b10082.609ENSDORG00000006077Upf3b10082.609Dipodomys_ordii
ENSMOCG00000017893Upf3b9982.158ENSEASG00005012919UPF3B9990.265Equus_asinus_asinus
ENSMOCG00000017893Upf3b8949.083ENSEASG00005021884UPF3A8643.981Equus_asinus_asinus
ENSMOCG00000017893Upf3b9982.158ENSECAG00000016947UPF3B9982.456Equus_caballus
ENSMOCG00000017893Upf3b8948.853ENSECAG00000017141UPF3A8644.213Equus_caballus
ENSMOCG00000017893Upf3b10047.969ENSELUG00000020389upf3b10049.805Esox_lucius
ENSMOCG00000017893Upf3b10084.948ENSFCAG00000004388UPF3B10086.448Felis_catus
ENSMOCG00000017893Upf3b8449.169ENSFCAG00000014602UPF3A8245.433Felis_catus
ENSMOCG00000017893Upf3b9962.624ENSFALG00000001569UPF3B9962.425Ficedula_albicollis
ENSMOCG00000017893Upf3b10084.330ENSFDAG00000018869UPF3B10084.124Fukomys_damarensis
ENSMOCG00000017893Upf3b9351.404ENSFHEG00000017895upf3b9352.371Fundulus_heteroclitus
ENSMOCG00000017893Upf3b9352.371ENSGMOG00000001621upf3b9352.371Gadus_morhua
ENSMOCG00000017893Upf3b9962.805ENSGALG00000008618UPF3B9963.618Gallus_gallus
ENSMOCG00000017893Upf3b8653.919ENSGAFG00000000829upf3b10050.620Gambusia_affinis
ENSMOCG00000017893Upf3b9252.941ENSGACG00000017435upf3b9465.809Gasterosteus_aculeatus
ENSMOCG00000017893Upf3b9962.449ENSGAGG00000001219UPF3B9962.449Gopherus_agassizii
ENSMOCG00000017893Upf3b10085.507ENSGGOG00000023995UPF3B10093.309Gorilla_gorilla
ENSMOCG00000017893Upf3b8340.482ENSGGOG00000043074-8637.327Gorilla_gorilla
ENSMOCG00000017893Upf3b8549.169ENSGGOG00000015428UPF3A9340.966Gorilla_gorilla
ENSMOCG00000017893Upf3b8637.939ENSGGOG00000041219-9137.269Gorilla_gorilla
ENSMOCG00000017893Upf3b9455.269ENSHBUG00000017393upf3b9454.526Haplochromis_burtoni
ENSMOCG00000017893Upf3b10083.918ENSHGLG00000019582-10083.711Heterocephalus_glaber_female
ENSMOCG00000017893Upf3b8676.145ENSHGLG00000011189-9677.108Heterocephalus_glaber_female
ENSMOCG00000017893Upf3b10082.402ENSHGLG00100002042-10082.887Heterocephalus_glaber_male
ENSMOCG00000017893Upf3b8676.386ENSHGLG00100001889-9676.627Heterocephalus_glaber_male
ENSMOCG00000017893Upf3b10051.927ENSHCOG00000017004upf3b10051.012Hippocampus_comes
ENSMOCG00000017893Upf3b8556.501ENSIPUG00000019249upf3b10051.107Ictalurus_punctatus
ENSMOCG00000017893Upf3b10083.918ENSSTOG00000001101UPF3B10083.711Ictidomys_tridecemlineatus
ENSMOCG00000017893Upf3b10089.072ENSJJAG00000000053Upf3b10089.485Jaculus_jaculus
ENSMOCG00000017893Upf3b9850.936ENSKMAG00000020300upf3b9753.571Kryptolebias_marmoratus
ENSMOCG00000017893Upf3b6161.589ENSLBEG00000028689upf3b5961.333Labrus_bergylta
ENSMOCG00000017893Upf3b8757.763ENSLACG00000008691UPF3B9756.187Latimeria_chalumnae
ENSMOCG00000017893Upf3b5270.196ENSLOCG00000015238upf3b9753.488Lepisosteus_oculatus
ENSMOCG00000017893Upf3b9049.670ENSLOCG00000002665upf3a9145.898Lepisosteus_oculatus
ENSMOCG00000017893Upf3b10082.887ENSLAFG00000001267UPF3B10082.680Loxodonta_africana
ENSMOCG00000017893Upf3b8643.499ENSLAFG00000023358UPF3A9743.333Loxodonta_africana
ENSMOCG00000017893Upf3b10085.093ENSMFAG00000045414UPF3B10093.309Macaca_fascicularis
ENSMOCG00000017893Upf3b10085.093ENSMMUG00000020222UPF3B10093.309Macaca_mulatta
ENSMOCG00000017893Upf3b10085.093ENSMNEG00000039794UPF3B10093.309Macaca_nemestrina
ENSMOCG00000017893Upf3b10085.300ENSMLEG00000010999UPF3B10093.309Mandrillus_leucophaeus
ENSMOCG00000017893Upf3b9455.054ENSMZEG00005007871upf3b9454.310Maylandia_zebra
ENSMOCG00000017893Upf3b8648.730ENSMGAG00000014837UPF3A9842.558Meleagris_gallopavo
ENSMOCG00000017893Upf3b8162.594ENSMGAG00000007728UPF3B9863.750Meleagris_gallopavo
ENSMOCG00000017893Upf3b10090.309ENSMAUG00000008705Upf3b10091.546Mesocricetus_auratus
ENSMOCG00000017893Upf3b7093.333ENSMICG00000001743UPF3B10093.333Microcebus_murinus
ENSMOCG00000017893Upf3b8355.072ENSMMOG00000004183upf3b9452.954Mola_mola
ENSMOCG00000017893Upf3b8968.037ENSMODG00000010232UPF3B9968.037Monodelphis_domestica
ENSMOCG00000017893Upf3b8850.673ENSMODG00000003159UPF3A9649.776Monodelphis_domestica
ENSMOCG00000017893Upf3b6063.390ENSMALG00000008042upf3b9853.183Monopterus_albus
ENSMOCG00000017893Upf3b10089.691MGP_CAROLIEiJ_G0032999Upf3b10089.691Mus_caroli
ENSMOCG00000017893Upf3b10089.485ENSMUSG00000036572Upf3b10090.103Mus_musculus
ENSMOCG00000017893Upf3b10088.866MGP_PahariEiJ_G0031543Upf3b10088.866Mus_pahari
ENSMOCG00000017893Upf3b10089.485MGP_SPRETEiJ_G0034152Upf3b10090.103Mus_spretus
ENSMOCG00000017893Upf3b9884.746ENSMPUG00000001531UPF3B10084.534Mustela_putorius_furo
ENSMOCG00000017893Upf3b10084.742ENSMLUG00000010821UPF3B10083.711Myotis_lucifugus
ENSMOCG00000017893Upf3b10086.598ENSNGAG00000008231Upf3b10086.598Nannospalax_galili
ENSMOCG00000017893Upf3b8548.694ENSNLEG00000007563UPF3A8642.793Nomascus_leucogenys
ENSMOCG00000017893Upf3b9785.106ENSNLEG00000014897UPF3B10085.567Nomascus_leucogenys
ENSMOCG00000017893Upf3b6482.581ENSMEUG00000015615UPF3B8182.692Notamacropus_eugenii
ENSMOCG00000017893Upf3b10077.732ENSODEG00000002186-10077.320Octodon_degus
ENSMOCG00000017893Upf3b10052.727ENSONIG00000002536upf3b10053.831Oreochromis_niloticus
ENSMOCG00000017893Upf3b8959.226ENSOANG00000002594-9959.226Ornithorhynchus_anatinus
ENSMOCG00000017893Upf3b10087.216ENSOCUG00000010213UPF3B10087.010Oryctolagus_cuniculus
ENSMOCG00000017893Upf3b8454.831ENSORLG00000001026upf3b9453.700Oryzias_latipes
ENSMOCG00000017893Upf3b8749.773ENSORLG00000010911upf3a8645.538Oryzias_latipes
ENSMOCG00000017893Upf3b8743.792ENSORLG00020014317upf3a8648.853Oryzias_latipes_hni
ENSMOCG00000017893Upf3b8454.348ENSORLG00020003758upf3b9453.277Oryzias_latipes_hni
ENSMOCG00000017893Upf3b8454.458ENSORLG00015012954upf3b9452.610Oryzias_latipes_hsok
ENSMOCG00000017893Upf3b8454.237ENSOMEG00000014736upf3b9552.391Oryzias_melastigma
ENSMOCG00000017893Upf3b10082.816ENSOGAG00000004643-10083.711Otolemur_garnettii
ENSMOCG00000017893Upf3b9871.789ENSOGAG00000033003-10072.000Otolemur_garnettii
ENSMOCG00000017893Upf3b10084.631ENSOARG00000016051-10085.656Ovis_aries
ENSMOCG00000017893Upf3b9063.242ENSOARG00000007869-9960.364Ovis_aries
ENSMOCG00000017893Upf3b10085.507ENSPPAG00000040390UPF3B10093.309Pan_paniscus
ENSMOCG00000017893Upf3b8748.055ENSPPAG00000042267UPF3A9344.792Pan_paniscus
ENSMOCG00000017893Upf3b10086.804ENSPPRG00000023536UPF3B10086.804Panthera_pardus
ENSMOCG00000017893Upf3b8448.485ENSPPRG00000025062UPF3A8344.444Panthera_pardus
ENSMOCG00000017893Upf3b10084.105ENSPTIG00000015264UPF3B10088.396Panthera_tigris_altaica
ENSMOCG00000017893Upf3b8748.174ENSPTRG00000006073UPF3A9344.375Pan_troglodytes
ENSMOCG00000017893Upf3b10085.507ENSPTRG00000022228UPF3B10093.309Pan_troglodytes
ENSMOCG00000017893Upf3b8337.592ENSPTRG00000051640-9134.906Pan_troglodytes
ENSMOCG00000017893Upf3b10085.300ENSPANG00000000900UPF3B10093.309Papio_anubis
ENSMOCG00000017893Upf3b8558.711ENSPKIG00000019226upf3b7476.522Paramormyrops_kingsleyae
ENSMOCG00000017893Upf3b5767.143ENSPSIG00000005833UPF3B9068.914Pelodiscus_sinensis
ENSMOCG00000017893Upf3b8651.025ENSPSIG00000007468UPF3A9850.114Pelodiscus_sinensis
ENSMOCG00000017893Upf3b5665.201ENSPMGG00000016067upf3b9464.964Periophthalmus_magnuspinnatus
ENSMOCG00000017893Upf3b10094.650ENSPEMG00000012352Upf3b10094.650Peromyscus_maniculatus_bairdii
ENSMOCG00000017893Upf3b9365.284ENSPCIG00000028914UPF3B9662.288Phascolarctos_cinereus
ENSMOCG00000017893Upf3b6758.986ENSPCIG00000019590-7267.273Phascolarctos_cinereus
ENSMOCG00000017893Upf3b9652.463ENSPLAG00000005105upf3b9752.754Poecilia_latipinna
ENSMOCG00000017893Upf3b5271.053ENSPLAG00000011960upf3a6472.727Poecilia_latipinna
ENSMOCG00000017893Upf3b9652.463ENSPLAG00000019922upf3b9752.754Poecilia_latipinna
ENSMOCG00000017893Upf3b9652.677ENSPMEG00000023532upf3b9752.966Poecilia_mexicana
ENSMOCG00000017893Upf3b8548.694ENSPPYG00000005536UPF3A9340.795Pongo_abelii
ENSMOCG00000017893Upf3b6993.617ENSPPYG00000020675-10093.617Pongo_abelii
ENSMOCG00000017893Upf3b10085.773ENSPCAG00000009464UPF3B10085.567Procavia_capensis
ENSMOCG00000017893Upf3b10086.626ENSPCOG00000021960UPF3B10093.333Propithecus_coquereli
ENSMOCG00000017893Upf3b10074.639ENSPVAG00000014075UPF3B10072.990Pteropus_vampyrus
ENSMOCG00000017893Upf3b9455.076ENSPNYG00000009846upf3b9453.896Pundamilia_nyererei
ENSMOCG00000017893Upf3b8954.343ENSPNAG00000021528upf3b8664.835Pygocentrus_nattereri
ENSMOCG00000017893Upf3b10091.753ENSRNOG00000039994Upf3b10092.371Rattus_norvegicus
ENSMOCG00000017893Upf3b8282.872ENSRBIG00000037219UPF3B9983.668Rhinopithecus_bieti
ENSMOCG00000017893Upf3b10085.507ENSRROG00000041031UPF3B10093.309Rhinopithecus_roxellana
ENSMOCG00000017893Upf3b7645.000ENSSBOG00000029989UPF3A8038.933Saimiri_boliviensis_boliviensis
ENSMOCG00000017893Upf3b10087.010ENSSBOG00000019740UPF3B10093.680Saimiri_boliviensis_boliviensis
ENSMOCG00000017893Upf3b8849.888ENSSHAG00000009895UPF3A9848.989Sarcophilus_harrisii
ENSMOCG00000017893Upf3b8869.284ENSSHAG00000008634UPF3B9964.742Sarcophilus_harrisii
ENSMOCG00000017893Upf3b8557.143ENSSFOG00015005614upf3b9554.545Scleropages_formosus
ENSMOCG00000017893Upf3b9353.996ENSSMAG00000012913upf3b8466.544Scophthalmus_maximus
ENSMOCG00000017893Upf3b8354.699ENSSDUG00000005682upf3b9750.833Seriola_dumerili
ENSMOCG00000017893Upf3b5471.166ENSSDUG00000009680upf3a6772.477Seriola_dumerili
ENSMOCG00000017893Upf3b9850.412ENSSLDG00000003130upf3b9951.335Seriola_lalandi_dorsalis
ENSMOCG00000017893Upf3b8237.284ENSSARG00000007262UPF3A9235.697Sorex_araneus
ENSMOCG00000017893Upf3b8981.336ENSSARG00000004147UPF3B10081.944Sorex_araneus
ENSMOCG00000017893Upf3b9960.484ENSSPUG00000013082UPF3B9959.476Sphenodon_punctatus
ENSMOCG00000017893Upf3b9452.711ENSSPAG00000009989upf3b9453.879Stegastes_partitus
ENSMOCG00000017893Upf3b10083.505ENSSSCG00000012617UPF3B10083.299Sus_scrofa
ENSMOCG00000017893Upf3b8965.000ENSTGUG00000003413UPF3B9965.227Taeniopygia_guttata
ENSMOCG00000017893Upf3b8453.081ENSTGUG00000009493UPF3A9951.896Taeniopygia_guttata
ENSMOCG00000017893Upf3b8356.068ENSTRUG00000010645upf3b9552.165Takifugu_rubripes
ENSMOCG00000017893Upf3b8753.380ENSTNIG00000015763upf3b9049.883Tetraodon_nigroviridis
ENSMOCG00000017893Upf3b10071.753ENSTBEG00000003229UPF3B10071.546Tupaia_belangeri
ENSMOCG00000017893Upf3b7840.360ENSTTRG00000015414UPF3A7640.256Tursiops_truncatus
ENSMOCG00000017893Upf3b10082.268ENSUAMG00000024565UPF3B10090.265Ursus_americanus
ENSMOCG00000017893Upf3b9376.987ENSUMAG00000002150UPF3B9976.987Ursus_maritimus
ENSMOCG00000017893Upf3b8586.408ENSVPAG00000009971UPF3B10086.165Vicugna_pacos
ENSMOCG00000017893Upf3b10081.366ENSVVUG00000011594UPF3B10090.598Vulpes_vulpes
ENSMOCG00000017893Upf3b8752.874ENSXETG00000007440upf3b7875.691Xenopus_tropicalis
ENSMOCG00000017893Upf3b8444.231ENSXETG00000002572upf3a9043.855Xenopus_tropicalis
ENSMOCG00000017893Upf3b9351.193ENSXCOG00000016586upf3b9764.929Xiphophorus_couchianus
ENSMOCG00000017893Upf3b9452.711ENSXMAG00000013680upf3b10050.826Xiphophorus_maculatus

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