EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMOCG00000018716 (Gene tree)
Gene ID: 102000157
Gene Symbol: Srbd1
Alias: D530025C17Rik
Full Name: S1 RNA binding domain 1
Gene Type: protein_coding
Species: Microtus_ochrogaster
Status: putative
Strand: Minus strand
Length: 176417 bases
Position: chr16:9002566-9178982
Accession: 102000157
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMOCP00000021338	S1	PF00575.23	6.3e-09	1	1
ENSMOCP00000021334	S1	PF00575.23	6.6e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMOCT00000025169	-	2952	XM_013348969	ENSMOCP00000021338	983 (aa)	XP_013204423	UPI00038BEB38
ENSMOCT00000025165	-	3009	-	ENSMOCP00000021334	1002 (aa)	-	-

Gene Model

Click here to download ENSMOCG00000018716's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000018716's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMOCG00000018716	Srbd1	100	83.635	ENSG00000068784	SRBD1	100	83.635	Homo_sapiens
ENSMOCG00000018716	Srbd1	100	50.839	ENSAPOG00000005103	si:ch211-117n7.8	99	50.837	Acanthochromis_polyacanthus
ENSMOCG00000018716	Srbd1	100	84.004	ENSAMEG00000005993	SRBD1	100	84.004	Ailuropoda_melanoleuca
ENSMOCG00000018716	Srbd1	83	56.527	ENSACIG00000009875	si:ch211-117n7.8	85	56.532	Amphilophus_citrinellus
ENSMOCG00000018716	Srbd1	98	51.254	ENSAOCG00000024718	si:ch211-117n7.8	98	51.403	Amphiprion_ocellaris
ENSMOCG00000018716	Srbd1	97	52.294	ENSAPEG00000002645	si:ch211-117n7.8	99	52.294	Amphiprion_percula
ENSMOCG00000018716	Srbd1	84	57.500	ENSATEG00000010844	si:ch211-117n7.8	98	52.156	Anabas_testudineus
ENSMOCG00000018716	Srbd1	100	69.193	ENSAPLG00000006313	SRBD1	100	69.390	Anas_platyrhynchos
ENSMOCG00000018716	Srbd1	100	83.450	ENSANAG00000025573	SRBD1	100	83.450	Aotus_nancymaae
ENSMOCG00000018716	Srbd1	85	56.706	ENSACLG00000024219	si:ch211-117n7.8	83	56.471	Astatotilapia_calliptera
ENSMOCG00000018716	Srbd1	88	59.132	ENSAMXG00000004294	SRBD1	97	55.102	Astyanax_mexicanus
ENSMOCG00000018716	Srbd1	100	83.350	ENSBTAG00000007508	SRBD1	97	83.450	Bos_taurus
ENSMOCG00000018716	Srbd1	73	30.067	WBGene00022830	ZK973.1	91	30.201	Caenorhabditis_elegans
ENSMOCG00000018716	Srbd1	100	82.849	ENSCJAG00000000727	SRBD1	100	82.849	Callithrix_jacchus
ENSMOCG00000018716	Srbd1	100	84.253	ENSCAFG00000002554	SRBD1	100	84.253	Canis_familiaris
ENSMOCG00000018716	Srbd1	100	81.426	ENSCAFG00020026284	SRBD1	99	87.368	Canis_lupus_dingo
ENSMOCG00000018716	Srbd1	100	82.932	ENSCHIG00000016535	SRBD1	98	83.032	Capra_hircus
ENSMOCG00000018716	Srbd1	100	84.184	ENSTSYG00000012797	SRBD1	100	84.184	Carlito_syrichta
ENSMOCG00000018716	Srbd1	100	84.264	ENSCPOG00000004773	SRBD1	100	84.264	Cavia_porcellus
ENSMOCG00000018716	Srbd1	100	83.751	ENSCCAG00000025589	SRBD1	100	83.751	Cebus_capucinus
ENSMOCG00000018716	Srbd1	100	84.538	ENSCATG00000039530	SRBD1	100	84.538	Cercocebus_atys
ENSMOCG00000018716	Srbd1	100	85.020	ENSCLAG00000008623	SRBD1	100	85.020	Chinchilla_lanigera
ENSMOCG00000018716	Srbd1	100	84.639	ENSCSAG00000013350	SRBD1	100	84.639	Chlorocebus_sabaeus
ENSMOCG00000018716	Srbd1	87	90.446	ENSCHOG00000003805	SRBD1	87	90.446	Choloepus_hoffmanni
ENSMOCG00000018716	Srbd1	100	71.386	ENSCPBG00000005677	SRBD1	100	72.161	Chrysemys_picta_bellii
ENSMOCG00000018716	Srbd1	79	42.839	ENSCING00000005950	-	99	42.839	Ciona_intestinalis
ENSMOCG00000018716	Srbd1	79	44.204	ENSCSAVG00000000861	-	99	44.204	Ciona_savignyi
ENSMOCG00000018716	Srbd1	99	84.004	ENSCANG00000016307	SRBD1	99	84.004	Colobus_angolensis_palliatus
ENSMOCG00000018716	Srbd1	100	92.886	ENSCGRG00001000513	Srbd1	100	92.886	Cricetulus_griseus_chok1gshd
ENSMOCG00000018716	Srbd1	100	92.886	ENSCGRG00000002283	Srbd1	100	92.886	Cricetulus_griseus_crigri
ENSMOCG00000018716	Srbd1	97	49.161	ENSCSEG00000000856	si:ch211-117n7.8	85	55.294	Cynoglossus_semilaevis
ENSMOCG00000018716	Srbd1	85	56.941	ENSCVAG00000020212	si:ch211-117n7.8	90	56.941	Cyprinodon_variegatus
ENSMOCG00000018716	Srbd1	100	83.083	ENSDNOG00000018686	SRBD1	100	83.083	Dasypus_novemcinctus
ENSMOCG00000018716	Srbd1	100	84.162	ENSDORG00000010468	Srbd1	100	84.162	Dipodomys_ordii
ENSMOCG00000018716	Srbd1	100	33.497	FBgn0051156	CG31156	99	32.883	Drosophila_melanogaster
ENSMOCG00000018716	Srbd1	89	79.783	ENSETEG00000000739	SRBD1	92	80.325	Echinops_telfairi
ENSMOCG00000018716	Srbd1	73	48.365	ENSEBUG00000008902	si:ch211-117n7.8	96	48.365	Eptatretus_burgeri
ENSMOCG00000018716	Srbd1	100	81.124	ENSEASG00005003132	SRBD1	97	89.172	Equus_asinus_asinus
ENSMOCG00000018716	Srbd1	100	84.639	ENSECAG00000013865	SRBD1	98	84.639	Equus_caballus
ENSMOCG00000018716	Srbd1	84	59.382	ENSELUG00000012592	si:ch211-117n7.8	81	59.382	Esox_lucius
ENSMOCG00000018716	Srbd1	100	84.538	ENSFCAG00000005101	SRBD1	100	84.538	Felis_catus
ENSMOCG00000018716	Srbd1	100	68.357	ENSFALG00000012966	SRBD1	100	68.357	Ficedula_albicollis
ENSMOCG00000018716	Srbd1	98	84.401	ENSFDAG00000016670	SRBD1	99	84.401	Fukomys_damarensis
ENSMOCG00000018716	Srbd1	85	57.479	ENSFHEG00000019480	si:ch211-117n7.8	83	57.479	Fundulus_heteroclitus
ENSMOCG00000018716	Srbd1	50	52.982	ENSGMOG00000018010	-	100	52.982	Gadus_morhua
ENSMOCG00000018716	Srbd1	100	68.580	ENSGALG00000009990	SRBD1	100	69.192	Gallus_gallus
ENSMOCG00000018716	Srbd1	90	54.204	ENSGAFG00000019664	si:ch211-117n7.8	99	51.045	Gambusia_affinis
ENSMOCG00000018716	Srbd1	62	59.425	ENSGACG00000010794	si:ch211-117n7.8	100	59.425	Gasterosteus_aculeatus
ENSMOCG00000018716	Srbd1	84	79.832	ENSGAGG00000006166	SRBD1	99	79.832	Gopherus_agassizii
ENSMOCG00000018716	Srbd1	97	84.330	ENSGGOG00000005910	SRBD1	100	84.314	Gorilla_gorilla
ENSMOCG00000018716	Srbd1	85	50.481	ENSHBUG00000013207	si:ch211-117n7.8	99	46.557	Haplochromis_burtoni
ENSMOCG00000018716	Srbd1	99	85.554	ENSHGLG00000018153	-	99	85.554	Heterocephalus_glaber_female
ENSMOCG00000018716	Srbd1	99	85.351	ENSHGLG00100015183	-	99	85.351	Heterocephalus_glaber_male
ENSMOCG00000018716	Srbd1	85	60.570	ENSIPUG00000009661	srbd1	97	53.970	Ictalurus_punctatus
ENSMOCG00000018716	Srbd1	100	86.396	ENSSTOG00000005898	SRBD1	100	86.396	Ictidomys_tridecemlineatus
ENSMOCG00000018716	Srbd1	100	80.344	ENSJJAG00000022244	Srbd1	100	80.344	Jaculus_jaculus
ENSMOCG00000018716	Srbd1	99	50.450	ENSKMAG00000003473	si:ch211-117n7.8	98	50.450	Kryptolebias_marmoratus
ENSMOCG00000018716	Srbd1	99	51.953	ENSLBEG00000027518	si:ch211-117n7.8	99	51.953	Labrus_bergylta
ENSMOCG00000018716	Srbd1	84	70.072	ENSLACG00000009790	SRBD1	98	70.072	Latimeria_chalumnae
ENSMOCG00000018716	Srbd1	100	56.543	ENSLOCG00000016360	si:ch211-117n7.8	99	56.566	Lepisosteus_oculatus
ENSMOCG00000018716	Srbd1	100	84.538	ENSMFAG00000042026	SRBD1	100	84.538	Macaca_fascicularis
ENSMOCG00000018716	Srbd1	100	84.438	ENSMMUG00000003490	SRBD1	100	84.438	Macaca_mulatta
ENSMOCG00000018716	Srbd1	100	82.129	ENSMNEG00000034701	SRBD1	100	82.129	Macaca_nemestrina
ENSMOCG00000018716	Srbd1	100	84.337	ENSMLEG00000000745	SRBD1	100	84.337	Mandrillus_leucophaeus
ENSMOCG00000018716	Srbd1	82	56.053	ENSMAMG00000021921	si:ch211-117n7.8	99	50.199	Mastacembelus_armatus
ENSMOCG00000018716	Srbd1	85	56.706	ENSMZEG00005027369	si:ch211-117n7.8	83	56.471	Maylandia_zebra
ENSMOCG00000018716	Srbd1	80	74.121	ENSMGAG00000010273	SRBD1	99	74.121	Meleagris_gallopavo
ENSMOCG00000018716	Srbd1	79	91.439	ENSMAUG00000013916	Srbd1	99	88.769	Mesocricetus_auratus
ENSMOCG00000018716	Srbd1	100	84.824	ENSMICG00000007835	SRBD1	100	84.824	Microcebus_murinus
ENSMOCG00000018716	Srbd1	84	55.833	ENSMMOG00000007507	si:ch211-117n7.8	87	55.833	Mola_mola
ENSMOCG00000018716	Srbd1	99	50.591	ENSMALG00000001562	si:ch211-117n7.8	99	50.690	Monopterus_albus
ENSMOCG00000018716	Srbd1	100	88.606	MGP_CAROLIEiJ_G0021934	Srbd1	100	90.196	Mus_caroli
ENSMOCG00000018716	Srbd1	100	88.403	ENSMUSG00000024135	Srbd1	100	88.403	Mus_musculus
ENSMOCG00000018716	Srbd1	100	87.386	MGP_PahariEiJ_G0020924	Srbd1	100	87.386	Mus_pahari
ENSMOCG00000018716	Srbd1	100	88.911	MGP_SPRETEiJ_G0022850	Srbd1	100	88.911	Mus_spretus
ENSMOCG00000018716	Srbd1	100	80.622	ENSMLUG00000007039	SRBD1	100	80.622	Myotis_lucifugus
ENSMOCG00000018716	Srbd1	100	84.857	ENSNGAG00000011893	Srbd1	100	84.857	Nannospalax_galili
ENSMOCG00000018716	Srbd1	84	56.423	ENSNBRG00000012873	si:ch211-117n7.8	99	50.507	Neolamprologus_brichardi
ENSMOCG00000018716	Srbd1	100	83.835	ENSNLEG00000016877	SRBD1	100	83.835	Nomascus_leucogenys
ENSMOCG00000018716	Srbd1	100	82.843	ENSODEG00000012095	SRBD1	100	82.843	Octodon_degus
ENSMOCG00000018716	Srbd1	84	57.383	ENSONIG00000000945	si:ch211-117n7.8	100	57.383	Oreochromis_niloticus
ENSMOCG00000018716	Srbd1	100	85.383	ENSOCUG00000015385	SRBD1	100	85.383	Oryctolagus_cuniculus
ENSMOCG00000018716	Srbd1	98	48.574	ENSORLG00000004427	si:ch211-117n7.8	98	48.574	Oryzias_latipes
ENSMOCG00000018716	Srbd1	98	51.133	ENSORLG00020012792	si:ch211-117n7.8	98	51.277	Oryzias_latipes_hni
ENSMOCG00000018716	Srbd1	98	51.229	ENSORLG00015018598	si:ch211-117n7.8	98	51.229	Oryzias_latipes_hsok
ENSMOCG00000018716	Srbd1	84	56.563	ENSOMEG00000012229	si:ch211-117n7.8	82	56.921	Oryzias_melastigma
ENSMOCG00000018716	Srbd1	100	80.020	ENSOGAG00000001076	SRBD1	100	80.020	Otolemur_garnettii
ENSMOCG00000018716	Srbd1	100	79.360	ENSOARG00000005958	SRBD1	100	79.942	Ovis_aries
ENSMOCG00000018716	Srbd1	100	83.936	ENSPPAG00000038442	SRBD1	100	83.936	Pan_paniscus
ENSMOCG00000018716	Srbd1	100	84.839	ENSPPRG00000003449	SRBD1	100	84.839	Panthera_pardus
ENSMOCG00000018716	Srbd1	100	84.940	ENSPTIG00000012495	SRBD1	100	84.940	Panthera_tigris_altaica
ENSMOCG00000018716	Srbd1	100	83.936	ENSPTRG00000011889	SRBD1	100	83.936	Pan_troglodytes
ENSMOCG00000018716	Srbd1	100	84.237	ENSPANG00000008063	SRBD1	100	84.237	Papio_anubis
ENSMOCG00000018716	Srbd1	96	54.180	ENSPKIG00000021973	si:ch211-117n7.8	98	53.638	Paramormyrops_kingsleyae
ENSMOCG00000018716	Srbd1	100	71.630	ENSPSIG00000008992	SRBD1	100	72.088	Pelodiscus_sinensis
ENSMOCG00000018716	Srbd1	84	54.664	ENSPMGG00000013348	si:ch211-117n7.8	99	50.609	Periophthalmus_magnuspinnatus
ENSMOCG00000018716	Srbd1	100	90.665	ENSPEMG00000020684	Srbd1	100	90.665	Peromyscus_maniculatus_bairdii
ENSMOCG00000018716	Srbd1	99	50.789	ENSPFOG00000010650	si:ch211-117n7.8	99	50.789	Poecilia_formosa
ENSMOCG00000018716	Srbd1	99	50.493	ENSPLAG00000002141	si:ch211-117n7.8	99	50.493	Poecilia_latipinna
ENSMOCG00000018716	Srbd1	99	50.888	ENSPMEG00000018537	si:ch211-117n7.8	99	50.888	Poecilia_mexicana
ENSMOCG00000018716	Srbd1	97	51.689	ENSPREG00000003258	si:ch211-117n7.8	98	51.689	Poecilia_reticulata
ENSMOCG00000018716	Srbd1	100	77.316	ENSPPYG00000012444	SRBD1	99	77.316	Pongo_abelii
ENSMOCG00000018716	Srbd1	82	79.679	ENSPCAG00000005629	SRBD1	86	79.679	Procavia_capensis
ENSMOCG00000018716	Srbd1	100	72.472	ENSPCOG00000017669	SRBD1	100	72.472	Propithecus_coquereli
ENSMOCG00000018716	Srbd1	100	73.896	ENSPVAG00000001782	SRBD1	100	73.896	Pteropus_vampyrus
ENSMOCG00000018716	Srbd1	85	54.112	ENSPNYG00000000508	si:ch211-117n7.8	86	53.874	Pundamilia_nyererei
ENSMOCG00000018716	Srbd1	96	56.586	ENSPNAG00000013492	SRBD1	98	55.979	Pygocentrus_nattereri
ENSMOCG00000018716	Srbd1	100	87.500	ENSRNOG00000014720	Srbd1	99	87.500	Rattus_norvegicus
ENSMOCG00000018716	Srbd1	99	83.903	ENSRBIG00000033486	SRBD1	99	83.903	Rhinopithecus_bieti
ENSMOCG00000018716	Srbd1	99	83.903	ENSRROG00000041599	SRBD1	99	83.903	Rhinopithecus_roxellana
ENSMOCG00000018716	Srbd1	100	83.350	ENSSBOG00000024982	SRBD1	100	83.350	Saimiri_boliviensis_boliviensis
ENSMOCG00000018716	Srbd1	84	59.498	ENSSFOG00015001128	si:ch211-117n7.8	90	59.498	Scleropages_formosus
ENSMOCG00000018716	Srbd1	84	56.940	ENSSMAG00000018256	si:ch211-117n7.8	82	56.837	Scophthalmus_maximus
ENSMOCG00000018716	Srbd1	84	56.243	ENSSLDG00000023189	si:ch211-117n7.8	83	56.243	Seriola_lalandi_dorsalis
ENSMOCG00000018716	Srbd1	100	75.862	ENSSARG00000009740	SRBD1	100	75.862	Sorex_araneus
ENSMOCG00000018716	Srbd1	88	74.885	ENSSPUG00000010475	SRBD1	100	70.662	Sphenodon_punctatus
ENSMOCG00000018716	Srbd1	84	55.582	ENSSPAG00000008092	-	84	55.582	Stegastes_partitus
ENSMOCG00000018716	Srbd1	100	84.036	ENSSSCG00000008445	SRBD1	98	84.137	Sus_scrofa
ENSMOCG00000018716	Srbd1	84	76.145	ENSTGUG00000003878	SRBD1	100	76.145	Taeniopygia_guttata
ENSMOCG00000018716	Srbd1	99	50.726	ENSTRUG00000007080	si:ch211-117n7.8	99	51.018	Takifugu_rubripes
ENSMOCG00000018716	Srbd1	98	50.742	ENSTNIG00000007464	si:ch211-117n7.8	98	50.742	Tetraodon_nigroviridis
ENSMOCG00000018716	Srbd1	80	94.681	ENSTBEG00000004556	SRBD1	82	94.681	Tupaia_belangeri
ENSMOCG00000018716	Srbd1	94	83.426	ENSTTRG00000011871	SRBD1	94	84.262	Tursiops_truncatus
ENSMOCG00000018716	Srbd1	100	83.835	ENSUAMG00000008126	SRBD1	100	83.054	Ursus_americanus
ENSMOCG00000018716	Srbd1	100	83.936	ENSUMAG00000012902	SRBD1	98	83.936	Ursus_maritimus
ENSMOCG00000018716	Srbd1	91	85.936	ENSVPAG00000006825	SRBD1	99	85.936	Vicugna_pacos
ENSMOCG00000018716	Srbd1	100	83.735	ENSVVUG00000005389	SRBD1	100	84.237	Vulpes_vulpes
ENSMOCG00000018716	Srbd1	100	51.398	ENSXETG00000002760	srbd1	100	52.478	Xenopus_tropicalis
ENSMOCG00000018716	Srbd1	99	51.137	ENSXMAG00000016861	si:ch211-117n7.8	99	51.137	Xiphophorus_maculatus