EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMOCG00000019121 (Gene tree)
Gene ID: 101982232
Gene Symbol: Chd1
Alias: 4930525N21Rik
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Microtus_ochrogaster
Status: putative
Strand: Minus strand
Length: 67270 bases
Position: chrLG9:2867198-2934467
Accession: 101982232
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMOCP00000021949	ResIII	PF04851.15	3.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMOCT00000025788	-	5028	XM_013352265	ENSMOCP00000021949	1675 (aa)	XP_013207719	-

Gene Model

Click here to download ENSMOCG00000019121's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000019121's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMOCG00000019121	Chd1	89	67.889	ENSMOCG00000015124	Chd2	88	69.263

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMOCG00000019121	Chd1	100	93.224	ENSG00000153922	CHD1	100	93.341	Homo_sapiens
ENSMOCG00000019121	Chd1	65	83.514	ENSAPOG00000005764	chd1	92	84.750	Acanthochromis_polyacanthus
ENSMOCG00000019121	Chd1	88	74.901	ENSAOCG00000023105	chd1	92	75.739	Amphiprion_ocellaris
ENSMOCG00000019121	Chd1	88	76.034	ENSAPEG00000013544	chd1	92	76.897	Amphiprion_percula
ENSMOCG00000019121	Chd1	90	75.403	ENSATEG00000010676	chd1	92	75.145	Anabas_testudineus
ENSMOCG00000019121	Chd1	70	82.935	ENSAMXG00000010843	chd1	88	83.798	Astyanax_mexicanus
ENSMOCG00000019121	Chd1	100	93.116	ENSCATG00000032035	CHD1	100	92.999	Cercocebus_atys
ENSMOCG00000019121	Chd1	100	93.057	ENSCSAG00000015339	CHD1	100	92.940	Chlorocebus_sabaeus
ENSMOCG00000019121	Chd1	55	88.077	ENSCPBG00000015831	CHD1	99	83.538	Chrysemys_picta_bellii
ENSMOCG00000019121	Chd1	100	90.952	ENSCANG00000036916	CHD1	100	90.835	Colobus_angolensis_palliatus
ENSMOCG00000019121	Chd1	100	94.912	ENSCGRG00001023943	Chd1	100	94.912	Cricetulus_griseus_chok1gshd
ENSMOCG00000019121	Chd1	100	94.912	ENSCGRG00000008652	Chd1	100	94.912	Cricetulus_griseus_crigri
ENSMOCG00000019121	Chd1	88	73.688	ENSCSEG00000009553	chd1	92	74.832	Cynoglossus_semilaevis
ENSMOCG00000019121	Chd1	90	95.017	ENSEASG00005016110	CHD1	96	96.588	Equus_asinus_asinus
ENSMOCG00000019121	Chd1	88	76.413	ENSELUG00000017677	chd1	93	75.016	Esox_lucius
ENSMOCG00000019121	Chd1	70	81.942	ENSFHEG00000021164	chd1	86	81.733	Fundulus_heteroclitus
ENSMOCG00000019121	Chd1	96	77.375	ENSGMOG00000001537	chd1	95	75.622	Gadus_morhua
ENSMOCG00000019121	Chd1	91	86.671	ENSGALG00000031327	-	96	86.862	Gallus_gallus
ENSMOCG00000019121	Chd1	84	94.624	ENSGAFG00000019880	chd1	91	94.624	Gambusia_affinis
ENSMOCG00000019121	Chd1	99	89.870	ENSGGOG00000011463	CHD1	99	89.870	Gorilla_gorilla
ENSMOCG00000019121	Chd1	87	76.903	ENSHCOG00000014222	chd1	91	76.923	Hippocampus_comes
ENSMOCG00000019121	Chd1	86	79.811	ENSIPUG00000001369	chd1	92	79.406	Ictalurus_punctatus
ENSMOCG00000019121	Chd1	60	94.274	ENSLAFG00000023183	CHD1	94	94.274	Loxodonta_africana
ENSMOCG00000019121	Chd1	100	93.057	ENSMFAG00000031226	CHD1	100	92.940	Macaca_fascicularis
ENSMOCG00000019121	Chd1	82	96.507	ENSMMUG00000014090	CHD1	96	96.507	Macaca_mulatta
ENSMOCG00000019121	Chd1	100	93.003	ENSMNEG00000045073	CHD1	100	92.886	Macaca_nemestrina
ENSMOCG00000019121	Chd1	96	88.869	ENSMLEG00000041096	CHD1	97	88.929	Mandrillus_leucophaeus
ENSMOCG00000019121	Chd1	68	84.183	ENSMZEG00005010957	chd1	91	80.897	Maylandia_zebra
ENSMOCG00000019121	Chd1	78	78.056	ENSMALG00000013317	chd1	92	78.208	Monopterus_albus
ENSMOCG00000019121	Chd1	100	93.688	MGP_CAROLIEiJ_G0021099	Chd1	99	96.846	Mus_caroli
ENSMOCG00000019121	Chd1	100	94.097	ENSMUSG00000023852	Chd1	99	97.124	Mus_musculus
ENSMOCG00000019121	Chd1	100	93.783	MGP_PahariEiJ_G0023414	Chd1	99	97.405	Mus_pahari
ENSMOCG00000019121	Chd1	86	78.659	ENSNBRG00000006860	chd1	91	78.249	Neolamprologus_brichardi
ENSMOCG00000019121	Chd1	99	90.867	ENSNLEG00000014493	CHD1	99	90.867	Nomascus_leucogenys
ENSMOCG00000019121	Chd1	100	88.844	ENSOANG00000004891	CHD1	100	89.695	Ornithorhynchus_anatinus
ENSMOCG00000019121	Chd1	54	81.015	ENSORLG00015016725	chd1	93	78.122	Oryzias_latipes_hsok
ENSMOCG00000019121	Chd1	100	89.837	ENSPPAG00000043367	CHD1	100	90.401	Pan_paniscus
ENSMOCG00000019121	Chd1	100	92.932	ENSPTRG00000017103	CHD1	100	93.049	Pan_troglodytes
ENSMOCG00000019121	Chd1	100	93.057	ENSPANG00000006387	CHD1	100	92.940	Papio_anubis
ENSMOCG00000019121	Chd1	91	75.362	ENSPKIG00000024719	chd1	92	76.347	Paramormyrops_kingsleyae
ENSMOCG00000019121	Chd1	71	81.940	ENSPMGG00000005785	chd1	98	76.547	Periophthalmus_magnuspinnatus
ENSMOCG00000019121	Chd1	100	94.857	ENSPEMG00000015939	Chd1	100	94.857	Peromyscus_maniculatus_bairdii
ENSMOCG00000019121	Chd1	50	77.041	ENSPLAG00000006473	-	85	77.592	Poecilia_latipinna
ENSMOCG00000019121	Chd1	96	73.386	ENSPREG00000004209	chd1	97	73.349	Poecilia_reticulata
ENSMOCG00000019121	Chd1	82	97.234	ENSRNOG00000014434	Chd1	97	97.234	Rattus_norvegicus
ENSMOCG00000019121	Chd1	100	94.247	ENSRBIG00000044325	CHD1	100	94.187	Rhinopithecus_bieti
ENSMOCG00000019121	Chd1	100	92.999	ENSRROG00000001726	CHD1	100	92.940	Rhinopithecus_roxellana
ENSMOCG00000019121	Chd1	68	84.609	ENSSFOG00015007161	chd1	88	82.137	Scleropages_formosus
ENSMOCG00000019121	Chd1	78	78.218	ENSSDUG00000018314	chd1	91	77.609	Seriola_dumerili
ENSMOCG00000019121	Chd1	52	83.827	ENSSLDG00000017244	chd1	84	85.664	Seriola_lalandi_dorsalis
ENSMOCG00000019121	Chd1	77	78.818	ENSSPAG00000007024	chd1	92	78.795	Stegastes_partitus
ENSMOCG00000019121	Chd1	86	93.636	ENSSSCG00000014177	CHD1	100	93.636	Sus_scrofa
ENSMOCG00000019121	Chd1	100	71.611	ENSTRUG00000010282	chd1	100	71.846	Takifugu_rubripes
ENSMOCG00000019121	Chd1	73	78.467	ENSTNIG00000007101	chd1	100	78.002	Tetraodon_nigroviridis
ENSMOCG00000019121	Chd1	96	71.559	ENSXCOG00000017184	chd1	97	70.844	Xiphophorus_couchianus
ENSMOCG00000019121	Chd1	78	78.075	ENSXMAG00000014538	chd1	95	78.434	Xiphophorus_maculatus