EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMOCG00000020220 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: small nuclear ribonucleoprotein F-like
Gene Type: protein_coding
Species: Microtus_ochrogaster
Status: putative
Strand: Plus strand
Length: 1315 bases
Position: chrJH996499.1:1115506-1116820
Accession: 101993405
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMOCP00000023532	LSM	PF01423.22	1.3e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMOCT00000027386	-	348	XM_013354773	ENSMOCP00000023532	77 (aa)	XP_013210227	-

Gene Model

Click here to download ENSMOCG00000020220's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000020220's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMOCG00000020220	-	87	77.612	ENSMOCG00000022166	-	74	77.612
ENSMOCG00000020220	-	87	83.824	ENSMOCG00000020437	Snrpf	79	83.824
ENSMOCG00000020220	-	81	41.270	ENSMOCG00000020049	Lsm6	79	41.270

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMOCG00000020220	-	87	83.824	ENSG00000139343	SNRPF	79	83.824	Homo_sapiens
ENSMOCG00000020220	-	87	80.882	ENSAPOG00000003377	snrpf	53	80.882	Acanthochromis_polyacanthus
ENSMOCG00000020220	-	87	83.824	ENSAMEG00000002166	-	80	83.824	Ailuropoda_melanoleuca
ENSMOCG00000020220	-	88	73.913	ENSAMEG00000018718	-	79	75.000	Ailuropoda_melanoleuca
ENSMOCG00000020220	-	87	80.882	ENSACIG00000013216	snrpf	80	80.882	Amphilophus_citrinellus
ENSMOCG00000020220	-	87	80.882	ENSAOCG00000015108	snrpf	80	80.882	Amphiprion_ocellaris
ENSMOCG00000020220	-	87	80.882	ENSAPEG00000022022	snrpf	80	80.882	Amphiprion_percula
ENSMOCG00000020220	-	87	80.882	ENSATEG00000022625	snrpf	73	80.882	Anabas_testudineus
ENSMOCG00000020220	-	87	82.353	ENSACAG00000014073	SNRPF	78	82.353	Anolis_carolinensis
ENSMOCG00000020220	-	87	64.179	ENSANAG00000025860	-	75	64.179	Aotus_nancymaae
ENSMOCG00000020220	-	87	76.471	ENSANAG00000020297	-	62	76.471	Aotus_nancymaae
ENSMOCG00000020220	-	87	83.824	ENSANAG00000032845	SNRPF	79	83.824	Aotus_nancymaae
ENSMOCG00000020220	-	87	80.882	ENSACLG00000016066	snrpf	80	80.882	Astatotilapia_calliptera
ENSMOCG00000020220	-	87	77.941	ENSAMXG00000007421	snrpf	79	77.941	Astyanax_mexicanus
ENSMOCG00000020220	-	91	78.873	ENSBTAG00000050012	-	84	77.941	Bos_taurus
ENSMOCG00000020220	-	87	83.824	ENSBTAG00000016271	SNRPF	79	83.824	Bos_taurus
ENSMOCG00000020220	-	94	60.274	WBGene00004918	snr-5	80	63.235	Caenorhabditis_elegans
ENSMOCG00000020220	-	87	83.824	ENSCJAG00000002705	-	79	83.824	Callithrix_jacchus
ENSMOCG00000020220	-	84	78.788	ENSCAFG00000031151	-	79	77.941	Canis_familiaris
ENSMOCG00000020220	-	87	83.824	ENSCAFG00000006395	-	61	83.824	Canis_familiaris
ENSMOCG00000020220	-	92	76.389	ENSCAFG00020013161	-	72	80.882	Canis_lupus_dingo
ENSMOCG00000020220	-	84	78.788	ENSCAFG00020010823	-	79	77.941	Canis_lupus_dingo
ENSMOCG00000020220	-	87	77.612	ENSTSYG00000036502	-	79	77.612	Carlito_syrichta
ENSMOCG00000020220	-	96	80.263	ENSTSYG00000031636	-	57	80.882	Carlito_syrichta
ENSMOCG00000020220	-	87	73.529	ENSTSYG00000030635	-	78	73.529	Carlito_syrichta
ENSMOCG00000020220	-	87	83.824	ENSCAPG00000007242	SNRPF	80	83.824	Cavia_aperea
ENSMOCG00000020220	-	87	83.824	ENSCPOG00000013898	SNRPF	79	83.824	Cavia_porcellus
ENSMOCG00000020220	-	87	83.824	ENSCCAG00000037378	-	79	83.824	Cebus_capucinus
ENSMOCG00000020220	-	84	84.848	ENSCCAG00000017356	-	79	83.824	Cebus_capucinus
ENSMOCG00000020220	-	100	78.481	ENSCCAG00000033627	-	54	77.941	Cebus_capucinus
ENSMOCG00000020220	-	87	83.824	ENSCLAG00000007200	SNRPF	79	83.824	Chinchilla_lanigera
ENSMOCG00000020220	-	87	83.824	ENSCSAG00000003602	-	55	83.824	Chlorocebus_sabaeus
ENSMOCG00000020220	-	73	84.211	ENSCHOG00000009392	SNRPF	89	84.211	Choloepus_hoffmanni
ENSMOCG00000020220	-	100	82.051	ENSCPBG00000024287	-	55	80.882	Chrysemys_picta_bellii
ENSMOCG00000020220	-	100	75.641	ENSCPBG00000001985	-	81	75.000	Chrysemys_picta_bellii
ENSMOCG00000020220	-	87	75.000	ENSCPBG00000006227	-	79	75.000	Chrysemys_picta_bellii
ENSMOCG00000020220	-	99	79.487	ENSCPBG00000026463	-	78	79.104	Chrysemys_picta_bellii
ENSMOCG00000020220	-	100	75.949	ENSCSAVG00000007498	-	77	76.471	Ciona_savignyi
ENSMOCG00000020220	-	87	83.824	ENSCGRG00001017100	-	79	83.824	Cricetulus_griseus_chok1gshd
ENSMOCG00000020220	-	87	79.104	ENSCGRG00001008965	-	53	79.104	Cricetulus_griseus_chok1gshd
ENSMOCG00000020220	-	87	83.824	ENSCGRG00000000336	-	79	83.824	Cricetulus_griseus_crigri
ENSMOCG00000020220	-	94	79.167	ENSCGRG00000018878	-	85	79.104	Cricetulus_griseus_crigri
ENSMOCG00000020220	-	87	79.412	ENSCSEG00000004748	snrpf	79	79.412	Cynoglossus_semilaevis
ENSMOCG00000020220	-	87	80.882	ENSCVAG00000000397	snrpf	54	80.882	Cyprinodon_variegatus
ENSMOCG00000020220	-	87	78.571	ENSDARG00000105037	snrpf	80	78.571	Danio_rerio
ENSMOCG00000020220	-	87	72.059	ENSDNOG00000049373	-	59	72.059	Dasypus_novemcinctus
ENSMOCG00000020220	-	87	82.353	ENSDNOG00000048989	-	61	82.353	Dasypus_novemcinctus
ENSMOCG00000020220	-	75	83.051	ENSDORG00000029740	-	72	83.051	Dipodomys_ordii
ENSMOCG00000020220	-	83	75.385	ENSDORG00000025351	-	90	75.385	Dipodomys_ordii
ENSMOCG00000020220	-	100	68.354	FBgn0000426	SmF	77	70.588	Drosophila_melanogaster
ENSMOCG00000020220	-	87	83.824	ENSETEG00000001558	-	79	83.824	Echinops_telfairi
ENSMOCG00000020220	-	94	66.216	ENSEBUG00000001793	-	69	73.438	Eptatretus_burgeri
ENSMOCG00000020220	-	87	83.824	ENSECAG00000019817	SNRPF	55	83.824	Equus_caballus
ENSMOCG00000020220	-	87	83.824	ENSEEUG00000013509	SNRPF	80	83.824	Erinaceus_europaeus
ENSMOCG00000020220	-	100	75.949	ENSELUG00000007737	RUXF	78	76.471	Esox_lucius
ENSMOCG00000020220	-	87	77.941	ENSELUG00000003121	RUXF	79	77.941	Esox_lucius
ENSMOCG00000020220	-	97	63.636	ENSFCAG00000031148	-	61	62.121	Felis_catus
ENSMOCG00000020220	-	87	83.824	ENSFCAG00000029966	-	79	83.824	Felis_catus
ENSMOCG00000020220	-	84	65.152	ENSFCAG00000021942	-	76	65.152	Felis_catus
ENSMOCG00000020220	-	87	83.824	ENSFALG00000010799	SNRPF	79	83.824	Ficedula_albicollis
ENSMOCG00000020220	-	87	83.824	ENSFDAG00000002831	-	79	83.824	Fukomys_damarensis
ENSMOCG00000020220	-	87	80.882	ENSFHEG00000003240	snrpf	60	80.882	Fundulus_heteroclitus
ENSMOCG00000020220	-	87	80.882	ENSGMOG00000007741	snrpf	80	80.882	Gadus_morhua
ENSMOCG00000020220	-	87	83.824	ENSGALG00000011409	SNRPF	79	83.824	Gallus_gallus
ENSMOCG00000020220	-	87	80.882	ENSGAFG00000016187	snrpf	78	80.882	Gambusia_affinis
ENSMOCG00000020220	-	87	79.412	ENSGACG00000020055	snrpf	80	79.412	Gasterosteus_aculeatus
ENSMOCG00000020220	-	77	80.000	ENSGAGG00000014132	-	73	78.689	Gopherus_agassizii
ENSMOCG00000020220	-	75	77.966	ENSGAGG00000011163	-	86	77.551	Gopherus_agassizii
ENSMOCG00000020220	-	100	78.205	ENSGAGG00000022991	-	80	77.941	Gopherus_agassizii
ENSMOCG00000020220	-	92	81.944	ENSGAGG00000012945	-	62	79.412	Gopherus_agassizii
ENSMOCG00000020220	-	97	66.234	ENSGGOG00000039936	-	74	63.235	Gorilla_gorilla
ENSMOCG00000020220	-	87	83.824	ENSGGOG00000001127	-	80	83.824	Gorilla_gorilla
ENSMOCG00000020220	-	94	65.278	ENSGGOG00000039564	-	78	64.615	Gorilla_gorilla
ENSMOCG00000020220	-	87	83.824	ENSHGLG00000009108	SNRPF	79	83.824	Heterocephalus_glaber_female
ENSMOCG00000020220	-	87	83.824	ENSHGLG00000021172	-	79	83.824	Heterocephalus_glaber_female
ENSMOCG00000020220	-	87	83.824	ENSHGLG00100019596	-	79	83.824	Heterocephalus_glaber_male
ENSMOCG00000020220	-	87	83.824	ENSHGLG00100008103	-	80	83.824	Heterocephalus_glaber_male
ENSMOCG00000020220	-	74	70.769	ENSHCOG00000018663	snrpf	51	70.769	Hippocampus_comes
ENSMOCG00000020220	-	87	80.882	ENSIPUG00000018994	snrpf	80	80.882	Ictalurus_punctatus
ENSMOCG00000020220	-	87	83.824	ENSSTOG00000010434	-	79	83.824	Ictidomys_tridecemlineatus
ENSMOCG00000020220	-	84	84.848	ENSJJAG00000004828	-	86	83.929	Jaculus_jaculus
ENSMOCG00000020220	-	100	70.513	ENSJJAG00000004558	-	81	69.118	Jaculus_jaculus
ENSMOCG00000020220	-	87	83.824	ENSJJAG00000011272	-	79	83.824	Jaculus_jaculus
ENSMOCG00000020220	-	100	71.795	ENSJJAG00000010502	-	81	70.588	Jaculus_jaculus
ENSMOCG00000020220	-	87	80.882	ENSKMAG00000013566	snrpf	79	80.882	Kryptolebias_marmoratus
ENSMOCG00000020220	-	87	80.882	ENSLBEG00000008800	snrpf	79	80.882	Labrus_bergylta
ENSMOCG00000020220	-	87	83.824	ENSLACG00000002456	-	58	83.824	Latimeria_chalumnae
ENSMOCG00000020220	-	87	77.941	ENSLOCG00000015744	snrpf	79	77.941	Lepisosteus_oculatus
ENSMOCG00000020220	-	87	83.824	ENSLAFG00000017426	SNRPF	79	83.824	Loxodonta_africana
ENSMOCG00000020220	-	87	80.882	ENSMAMG00000016593	snrpf	80	80.882	Mastacembelus_armatus
ENSMOCG00000020220	-	87	80.882	ENSMZEG00005014701	snrpf	80	80.882	Maylandia_zebra
ENSMOCG00000020220	-	87	83.824	ENSMGAG00000011453	-	61	83.824	Meleagris_gallopavo
ENSMOCG00000020220	-	79	85.484	ENSMAUG00000019737	-	84	85.484	Mesocricetus_auratus
ENSMOCG00000020220	-	79	85.484	ENSMAUG00000016909	-	84	85.484	Mesocricetus_auratus
ENSMOCG00000020220	-	87	77.941	ENSMAUG00000008799	-	79	77.941	Mesocricetus_auratus
ENSMOCG00000020220	-	77	80.000	ENSMAUG00000010289	-	66	80.000	Mesocricetus_auratus
ENSMOCG00000020220	-	84	78.788	ENSMICG00000030494	-	53	78.788	Microcebus_murinus
ENSMOCG00000020220	-	87	83.824	ENSMICG00000012153	-	79	83.824	Microcebus_murinus
ENSMOCG00000020220	-	87	79.412	ENSMMOG00000007127	snrpf	80	79.412	Mola_mola
ENSMOCG00000020220	-	87	83.824	ENSMODG00000008091	SNRPF	60	83.824	Monodelphis_domestica
ENSMOCG00000020220	-	87	80.882	ENSMALG00000012328	snrpf	80	80.882	Monopterus_albus
ENSMOCG00000020220	-	87	83.824	MGP_CAROLIEiJ_G0015735	-	79	83.824	Mus_caroli
ENSMOCG00000020220	-	87	83.824	ENSMUSG00000020018	Snrpf	79	83.824	Mus_musculus
ENSMOCG00000020220	-	87	83.824	MGP_PahariEiJ_G0031350	Snrpf	79	83.824	Mus_pahari
ENSMOCG00000020220	-	87	83.824	MGP_SPRETEiJ_G0016553	Snrpf	79	83.824	Mus_spretus
ENSMOCG00000020220	-	87	83.824	ENSMPUG00000007176	-	61	83.824	Mustela_putorius_furo
ENSMOCG00000020220	-	87	83.824	ENSMLUG00000026149	-	64	83.824	Myotis_lucifugus
ENSMOCG00000020220	-	87	83.824	ENSMLUG00000029201	-	64	83.824	Myotis_lucifugus
ENSMOCG00000020220	-	87	83.824	ENSMLUG00000013577	-	80	83.824	Myotis_lucifugus
ENSMOCG00000020220	-	100	67.089	ENSMLUG00000026269	-	62	66.667	Myotis_lucifugus
ENSMOCG00000020220	-	87	83.824	ENSMLUG00000027932	-	64	83.824	Myotis_lucifugus
ENSMOCG00000020220	-	87	83.824	ENSNGAG00000024292	-	79	83.824	Nannospalax_galili
ENSMOCG00000020220	-	81	76.190	ENSNGAG00000005851	-	71	75.000	Nannospalax_galili
ENSMOCG00000020220	-	87	80.882	ENSNBRG00000011682	snrpf	69	80.882	Neolamprologus_brichardi
ENSMOCG00000020220	-	87	57.353	ENSMEUG00000000671	SNRPF	80	57.353	Notamacropus_eugenii
ENSMOCG00000020220	-	87	83.824	ENSODEG00000010328	-	80	83.824	Octodon_degus
ENSMOCG00000020220	-	87	83.824	ENSOCUG00000010925	SNRPF	60	83.824	Oryctolagus_cuniculus
ENSMOCG00000020220	-	87	77.941	ENSORLG00020008216	snrpf	80	77.941	Oryzias_latipes_hni
ENSMOCG00000020220	-	87	77.941	ENSORLG00015007418	snrpf	80	77.941	Oryzias_latipes_hsok
ENSMOCG00000020220	-	87	79.412	ENSOMEG00000003018	snrpf	80	79.412	Oryzias_melastigma
ENSMOCG00000020220	-	87	82.353	ENSOGAG00000030323	-	79	82.353	Otolemur_garnettii
ENSMOCG00000020220	-	87	83.824	ENSOARG00000011853	-	59	83.824	Ovis_aries
ENSMOCG00000020220	-	94	68.056	ENSPPAG00000037479	-	78	67.692	Pan_paniscus
ENSMOCG00000020220	-	97	67.532	ENSPPAG00000037544	-	72	66.667	Pan_paniscus
ENSMOCG00000020220	-	97	63.636	ENSPPRG00000007449	-	67	63.636	Panthera_pardus
ENSMOCG00000020220	-	87	83.824	ENSPPRG00000005875	-	79	83.824	Panthera_pardus
ENSMOCG00000020220	-	87	83.824	ENSPTIG00000007520	SNRPF	79	83.824	Panthera_tigris_altaica
ENSMOCG00000020220	-	97	64.935	ENSPTIG00000005117	-	79	63.636	Panthera_tigris_altaica
ENSMOCG00000020220	-	94	68.056	ENSPTRG00000047717	-	78	67.692	Pan_troglodytes
ENSMOCG00000020220	-	97	67.532	ENSPTRG00000043814	-	72	66.667	Pan_troglodytes
ENSMOCG00000020220	-	87	80.882	ENSPKIG00000014784	snrpf	75	80.882	Paramormyrops_kingsleyae
ENSMOCG00000020220	-	87	83.824	ENSPSIG00000016462	SNRPF	79	83.824	Pelodiscus_sinensis
ENSMOCG00000020220	-	87	79.412	ENSPMGG00000023548	snrpf	80	79.412	Periophthalmus_magnuspinnatus
ENSMOCG00000020220	-	87	83.824	ENSPEMG00000023326	Snrpf	79	83.824	Peromyscus_maniculatus_bairdii
ENSMOCG00000020220	-	87	80.882	ENSPLAG00000023932	snrpf	80	80.882	Poecilia_latipinna
ENSMOCG00000020220	-	87	80.882	ENSPMEG00000003377	snrpf	80	80.882	Poecilia_mexicana
ENSMOCG00000020220	-	87	80.882	ENSPREG00000022635	snrpf	78	80.882	Poecilia_reticulata
ENSMOCG00000020220	-	87	83.824	ENSPPYG00000004847	-	79	83.824	Pongo_abelii
ENSMOCG00000020220	-	87	83.824	ENSPCOG00000023833	-	79	83.824	Propithecus_coquereli
ENSMOCG00000020220	-	87	83.824	ENSPVAG00000009036	SNRPF	79	83.824	Pteropus_vampyrus
ENSMOCG00000020220	-	87	80.882	ENSPNYG00000021712	snrpf	80	80.882	Pundamilia_nyererei
ENSMOCG00000020220	-	87	79.412	ENSPNAG00000019117	snrpf	80	79.412	Pygocentrus_nattereri
ENSMOCG00000020220	-	87	83.824	ENSRNOG00000005556	Snrpf	79	83.824	Rattus_norvegicus
ENSMOCG00000020220	-	87	82.353	ENSRBIG00000030414	-	79	82.353	Rhinopithecus_bieti
ENSMOCG00000020220	-	87	82.353	ENSRROG00000021975	-	79	82.353	Rhinopithecus_roxellana
ENSMOCG00000020220	-	84	49.254	YPR182W	SMX3	78	49.254	Saccharomyces_cerevisiae
ENSMOCG00000020220	-	87	83.824	ENSSBOG00000012868	-	79	83.824	Saimiri_boliviensis_boliviensis
ENSMOCG00000020220	-	87	67.647	ENSSBOG00000027638	-	78	67.647	Saimiri_boliviensis_boliviensis
ENSMOCG00000020220	-	87	70.149	ENSSBOG00000032297	-	74	72.308	Saimiri_boliviensis_boliviensis
ENSMOCG00000020220	-	87	83.824	ENSSBOG00000036179	-	79	83.824	Saimiri_boliviensis_boliviensis
ENSMOCG00000020220	-	87	83.824	ENSSHAG00000012294	SNRPF	61	83.824	Sarcophilus_harrisii
ENSMOCG00000020220	-	74	81.034	ENSSFOG00015021523	snrpf	87	81.034	Scleropages_formosus
ENSMOCG00000020220	-	87	79.412	ENSSMAG00000005533	snrpf	78	79.412	Scophthalmus_maximus
ENSMOCG00000020220	-	74	81.034	ENSSDUG00000016283	snrpf	69	81.034	Seriola_dumerili
ENSMOCG00000020220	-	87	80.882	ENSSLDG00000005119	snrpf	79	80.882	Seriola_lalandi_dorsalis
ENSMOCG00000020220	-	94	68.493	ENSSLDG00000003885	-	83	69.118	Seriola_lalandi_dorsalis
ENSMOCG00000020220	-	87	83.824	ENSSPUG00000014590	-	80	83.824	Sphenodon_punctatus
ENSMOCG00000020220	-	87	80.882	ENSSPAG00000003283	snrpf	77	80.882	Stegastes_partitus
ENSMOCG00000020220	-	87	83.824	ENSSSCG00000000895	SNRPF	79	83.824	Sus_scrofa
ENSMOCG00000020220	-	74	81.034	ENSTRUG00000014956	snrpf	84	81.034	Takifugu_rubripes
ENSMOCG00000020220	-	87	80.882	ENSTNIG00000012672	snrpf	79	80.882	Tetraodon_nigroviridis
ENSMOCG00000020220	-	87	57.353	ENSTTRG00000006070	SNRPF	79	57.353	Tursiops_truncatus
ENSMOCG00000020220	-	87	83.824	ENSUAMG00000008176	-	79	83.824	Ursus_americanus
ENSMOCG00000020220	-	100	76.923	ENSUAMG00000001101	-	80	77.941	Ursus_americanus
ENSMOCG00000020220	-	87	77.941	ENSUMAG00000006177	-	80	77.941	Ursus_maritimus
ENSMOCG00000020220	-	87	83.824	ENSUMAG00000003528	-	79	83.824	Ursus_maritimus
ENSMOCG00000020220	-	87	83.824	ENSVPAG00000008712	-	79	83.824	Vicugna_pacos
ENSMOCG00000020220	-	91	77.465	ENSVVUG00000023821	-	87	76.471	Vulpes_vulpes
ENSMOCG00000020220	-	87	61.429	ENSXETG00000021630	snrpf	80	61.429	Xenopus_tropicalis
ENSMOCG00000020220	-	87	80.882	ENSXCOG00000013860	snrpf	78	80.882	Xiphophorus_couchianus
ENSMOCG00000020220	-	87	80.882	ENSXMAG00000015448	snrpf	80	80.882	Xiphophorus_maculatus