EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMOCG00000020748 (Gene tree)
Gene ID: 101986604
Gene Symbol: Smg7
Alias: 9430023P16Rik
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Microtus_ochrogaster
Status: putative
Strand: Minus strand
Length: 62447 bases
Position: chrJH996427.1:1687616-1750062
Accession: 101986604
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMOCP00000024275	EST1	PF10374.9	6.9e-25	1	1
ENSMOCP00000024274	EST1	PF10374.9	6.9e-25	1	1
ENSMOCP00000024270	EST1	PF10374.9	7e-25	1	1
ENSMOCP00000024275	EST1_DNA_bind	PF10373.9	1.4e-55	1	1
ENSMOCP00000024274	EST1_DNA_bind	PF10373.9	1.4e-55	1	1
ENSMOCP00000024270	EST1_DNA_bind	PF10373.9	1.5e-55	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMOCT00000028136	-	3411	-	ENSMOCP00000024275	1136 (aa)	-	-
ENSMOCT00000028135	-	3423	-	ENSMOCP00000024274	1140 (aa)	-	UPI00038C3929
ENSMOCT00000028131	-	3705	XM_013352536	ENSMOCP00000024270	1148 (aa)	XP_013207990	-

Gene Model

Click here to download ENSMOCG00000020748's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000020748's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMOCG00000020748	Smg7	100	96.345	ENSG00000116698	SMG7	100	96.561	Homo_sapiens
ENSMOCG00000020748	Smg7	88	72.920	ENSAPOG00000009611	smg7	95	72.920	Acanthochromis_polyacanthus
ENSMOCG00000020748	Smg7	99	94.243	ENSAMEG00000002357	SMG7	99	94.154	Ailuropoda_melanoleuca
ENSMOCG00000020748	Smg7	97	63.458	ENSACIG00000015152	smg7	100	63.636	Amphilophus_citrinellus
ENSMOCG00000020748	Smg7	99	64.927	ENSAOCG00000013538	smg7	99	65.388	Amphiprion_ocellaris
ENSMOCG00000020748	Smg7	99	65.043	ENSAPEG00000007851	smg7	99	65.702	Amphiprion_percula
ENSMOCG00000020748	Smg7	99	64.431	ENSATEG00000006931	smg7	99	64.941	Anabas_testudineus
ENSMOCG00000020748	Smg7	100	87.139	ENSAPLG00000015811	SMG7	100	86.964	Anas_platyrhynchos
ENSMOCG00000020748	Smg7	100	83.542	ENSACAG00000014989	SMG7	100	83.542	Anolis_carolinensis
ENSMOCG00000020748	Smg7	100	95.075	ENSANAG00000028114	SMG7	100	95.075	Aotus_nancymaae
ENSMOCG00000020748	Smg7	99	64.231	ENSACLG00000022079	smg7	99	65.381	Astatotilapia_calliptera
ENSMOCG00000020748	Smg7	99	66.203	ENSAMXG00000020809	smg7	99	66.493	Astyanax_mexicanus
ENSMOCG00000020748	Smg7	100	95.387	ENSBTAG00000008003	SMG7	100	94.371	Bos_taurus
ENSMOCG00000020748	Smg7	100	95.909	ENSCJAG00000005135	SMG7	99	95.909	Callithrix_jacchus
ENSMOCG00000020748	Smg7	100	95.822	ENSCAFG00000013276	SMG7	98	95.997	Canis_familiaris
ENSMOCG00000020748	Smg7	100	95.822	ENSCAFG00020015475	SMG7	98	95.997	Canis_lupus_dingo
ENSMOCG00000020748	Smg7	99	94.793	ENSCHIG00000018192	SMG7	99	94.793	Capra_hircus
ENSMOCG00000020748	Smg7	100	95.648	ENSTSYG00000002667	SMG7	100	94.635	Carlito_syrichta
ENSMOCG00000020748	Smg7	100	96.258	ENSCPOG00000008906	SMG7	99	96.258	Cavia_porcellus
ENSMOCG00000020748	Smg7	100	95.163	ENSCCAG00000028596	SMG7	100	95.163	Cebus_capucinus
ENSMOCG00000020748	Smg7	100	96.519	ENSCATG00000011063	SMG7	100	95.515	Cercocebus_atys
ENSMOCG00000020748	Smg7	100	95.822	ENSCLAG00000010751	SMG7	100	95.822	Chinchilla_lanigera
ENSMOCG00000020748	Smg7	100	96.345	ENSCSAG00000012654	SMG7	98	96.345	Chlorocebus_sabaeus
ENSMOCG00000020748	Smg7	92	87.679	ENSCHOG00000010522	SMG7	93	87.966	Choloepus_hoffmanni
ENSMOCG00000020748	Smg7	100	89.833	ENSCPBG00000015724	SMG7	100	89.658	Chrysemys_picta_bellii
ENSMOCG00000020748	Smg7	99	95.390	ENSCANG00000015680	SMG7	99	95.390	Colobus_angolensis_palliatus
ENSMOCG00000020748	Smg7	100	98.432	ENSCGRG00001013705	Smg7	100	98.421	Cricetulus_griseus_chok1gshd
ENSMOCG00000020748	Smg7	100	98.432	ENSCGRG00000018401	Smg7	100	98.432	Cricetulus_griseus_crigri
ENSMOCG00000020748	Smg7	95	68.500	ENSCVAG00000011842	smg7	99	68.000	Cyprinodon_variegatus
ENSMOCG00000020748	Smg7	99	66.263	ENSDARG00000060767	smg7	99	66.782	Danio_rerio
ENSMOCG00000020748	Smg7	100	95.474	ENSDORG00000007331	Smg7	100	95.474	Dipodomys_ordii
ENSMOCG00000020748	Smg7	97	94.565	ENSETEG00000002654	SMG7	100	94.565	Echinops_telfairi
ENSMOCG00000020748	Smg7	100	96.319	ENSEASG00005006524	SMG7	100	96.319	Equus_asinus_asinus
ENSMOCG00000020748	Smg7	100	96.231	ENSECAG00000004313	SMG7	100	96.231	Equus_caballus
ENSMOCG00000020748	Smg7	97	94.751	ENSEEUG00000002024	SMG7	94	94.751	Erinaceus_europaeus
ENSMOCG00000020748	Smg7	99	64.356	ENSELUG00000010293	smg7	99	64.769	Esox_lucius
ENSMOCG00000020748	Smg7	100	96.056	ENSFCAG00000010900	SMG7	100	96.087	Felis_catus
ENSMOCG00000020748	Smg7	98	82.398	ENSFALG00000003047	SMG7	100	81.857	Ficedula_albicollis
ENSMOCG00000020748	Smg7	99	95.694	ENSFDAG00000012121	SMG7	99	96.164	Fukomys_damarensis
ENSMOCG00000020748	Smg7	99	63.410	ENSFHEG00000011073	smg7	99	63.683	Fundulus_heteroclitus
ENSMOCG00000020748	Smg7	78	73.864	ENSGMOG00000004916	smg7	92	66.861	Gadus_morhua
ENSMOCG00000020748	Smg7	100	87.850	ENSGALG00000004667	SMG7	100	87.675	Gallus_gallus
ENSMOCG00000020748	Smg7	99	63.668	ENSGAFG00000019000	smg7	99	63.582	Gambusia_affinis
ENSMOCG00000020748	Smg7	97	64.073	ENSGACG00000001634	smg7	99	64.803	Gasterosteus_aculeatus
ENSMOCG00000020748	Smg7	100	96.432	ENSGGOG00000002342	SMG7	100	95.427	Gorilla_gorilla
ENSMOCG00000020748	Smg7	99	64.244	ENSHBUG00000003726	smg7	97	71.574	Haplochromis_burtoni
ENSMOCG00000020748	Smg7	100	95.075	ENSHGLG00000009353	SMG7	100	95.989	Heterocephalus_glaber_female
ENSMOCG00000020748	Smg7	100	95.163	ENSHGLG00100009637	-	100	95.163	Heterocephalus_glaber_male
ENSMOCG00000020748	Smg7	100	88.256	ENSHGLG00100004878	-	100	88.256	Heterocephalus_glaber_male
ENSMOCG00000020748	Smg7	99	66.638	ENSIPUG00000016997	smg7	99	67.014	Ictalurus_punctatus
ENSMOCG00000020748	Smg7	100	96.432	ENSSTOG00000000401	SMG7	100	96.432	Ictidomys_tridecemlineatus
ENSMOCG00000020748	Smg7	100	95.175	ENSJJAG00000012351	Smg7	100	95.175	Jaculus_jaculus
ENSMOCG00000020748	Smg7	90	69.000	ENSKMAG00000004900	smg7	97	69.000	Kryptolebias_marmoratus
ENSMOCG00000020748	Smg7	52	61.000	ENSLBEG00000005220	-	75	63.573	Labrus_bergylta
ENSMOCG00000020748	Smg7	99	64.538	ENSLBEG00000002983	smg7	99	64.797	Labrus_bergylta
ENSMOCG00000020748	Smg7	99	75.260	ENSLACG00000000972	SMG7	99	75.065	Latimeria_chalumnae
ENSMOCG00000020748	Smg7	99	67.057	ENSLOCG00000002010	smg7	99	67.308	Lepisosteus_oculatus
ENSMOCG00000020748	Smg7	100	95.648	ENSLAFG00000008186	SMG7	100	95.648	Loxodonta_africana
ENSMOCG00000020748	Smg7	100	96.432	ENSMFAG00000031653	SMG7	100	96.407	Macaca_fascicularis
ENSMOCG00000020748	Smg7	100	96.519	ENSMMUG00000018458	SMG7	98	96.519	Macaca_mulatta
ENSMOCG00000020748	Smg7	100	95.515	ENSMNEG00000034798	SMG7	100	95.515	Macaca_nemestrina
ENSMOCG00000020748	Smg7	100	96.519	ENSMLEG00000037170	SMG7	100	95.515	Mandrillus_leucophaeus
ENSMOCG00000020748	Smg7	88	64.376	ENSMAMG00000018733	smg7	85	64.507	Mastacembelus_armatus
ENSMOCG00000020748	Smg7	99	64.731	ENSMZEG00005015247	smg7	99	64.987	Maylandia_zebra
ENSMOCG00000020748	Smg7	99	87.633	ENSMGAG00000001561	SMG7	99	87.456	Meleagris_gallopavo
ENSMOCG00000020748	Smg7	100	98.693	ENSMAUG00000019484	Smg7	100	98.693	Mesocricetus_auratus
ENSMOCG00000020748	Smg7	100	96.345	ENSMICG00000007145	SMG7	100	96.345	Microcebus_murinus
ENSMOCG00000020748	Smg7	99	63.258	ENSMMOG00000001524	smg7	99	63.723	Mola_mola
ENSMOCG00000020748	Smg7	92	90.987	ENSMODG00000007139	SMG7	99	90.987	Monodelphis_domestica
ENSMOCG00000020748	Smg7	99	64.175	ENSMALG00000000061	smg7	93	66.667	Monopterus_albus
ENSMOCG00000020748	Smg7	100	98.345	MGP_CAROLIEiJ_G0014704	Smg7	100	98.345	Mus_caroli
ENSMOCG00000020748	Smg7	100	98.084	ENSMUSG00000042772	Smg7	100	98.084	Mus_musculus
ENSMOCG00000020748	Smg7	100	98.258	MGP_PahariEiJ_G0027940	Smg7	100	98.258	Mus_pahari
ENSMOCG00000020748	Smg7	100	98.171	MGP_SPRETEiJ_G0015511	Smg7	100	98.171	Mus_spretus
ENSMOCG00000020748	Smg7	98	95.722	ENSMPUG00000011732	SMG7	97	95.900	Mustela_putorius_furo
ENSMOCG00000020748	Smg7	99	95.322	ENSMLUG00000015417	SMG7	99	95.322	Myotis_lucifugus
ENSMOCG00000020748	Smg7	100	97.038	ENSNGAG00000009836	Smg7	100	97.038	Nannospalax_galili
ENSMOCG00000020748	Smg7	98	60.261	ENSNBRG00000024343	smg7	98	69.524	Neolamprologus_brichardi
ENSMOCG00000020748	Smg7	100	96.519	ENSNLEG00000018018	SMG7	100	95.515	Nomascus_leucogenys
ENSMOCG00000020748	Smg7	77	85.290	ENSMEUG00000004681	SMG7	73	91.057	Notamacropus_eugenii
ENSMOCG00000020748	Smg7	96	84.110	ENSOPRG00000013942	SMG7	96	83.836	Ochotona_princeps
ENSMOCG00000020748	Smg7	100	96.084	ENSODEG00000010390	SMG7	100	96.084	Octodon_degus
ENSMOCG00000020748	Smg7	99	63.844	ENSONIG00000000277	smg7	99	64.987	Oreochromis_niloticus
ENSMOCG00000020748	Smg7	98	90.248	ENSOANG00000000994	SMG7	100	90.160	Ornithorhynchus_anatinus
ENSMOCG00000020748	Smg7	100	88.773	ENSOCUG00000005887	SMG7	94	88.947	Oryctolagus_cuniculus
ENSMOCG00000020748	Smg7	99	62.630	ENSORLG00000007314	smg7	70	92.105	Oryzias_latipes
ENSMOCG00000020748	Smg7	99	62.976	ENSORLG00020015779	smg7	70	92.105	Oryzias_latipes_hni
ENSMOCG00000020748	Smg7	99	63.480	ENSORLG00015012289	smg7	99	62.500	Oryzias_latipes_hsok
ENSMOCG00000020748	Smg7	99	62.146	ENSOMEG00000002328	smg7	99	62.396	Oryzias_melastigma
ENSMOCG00000020748	Smg7	97	95.648	ENSOGAG00000003107	SMG7	94	95.920	Otolemur_garnettii
ENSMOCG00000020748	Smg7	100	94.952	ENSOARG00000001352	SMG7	98	94.952	Ovis_aries
ENSMOCG00000020748	Smg7	100	95.515	ENSPPAG00000031619	SMG7	100	95.515	Pan_paniscus
ENSMOCG00000020748	Smg7	100	96.171	ENSPPRG00000011222	SMG7	100	94.635	Panthera_pardus
ENSMOCG00000020748	Smg7	96	95.716	ENSPTIG00000007242	SMG7	100	92.314	Panthera_tigris_altaica
ENSMOCG00000020748	Smg7	100	95.515	ENSPTRG00000001764	SMG7	100	95.515	Pan_troglodytes
ENSMOCG00000020748	Smg7	100	96.519	ENSPANG00000004520	SMG7	100	95.515	Papio_anubis
ENSMOCG00000020748	Smg7	99	64.211	ENSPKIG00000007242	smg7	99	68.500	Paramormyrops_kingsleyae
ENSMOCG00000020748	Smg7	99	90.909	ENSPSIG00000012201	SMG7	99	90.733	Pelodiscus_sinensis
ENSMOCG00000020748	Smg7	71	42.385	ENSPMGG00000021833	smg7	91	55.000	Periophthalmus_magnuspinnatus
ENSMOCG00000020748	Smg7	100	97.735	ENSPEMG00000011315	Smg7	100	97.735	Peromyscus_maniculatus_bairdii
ENSMOCG00000020748	Smg7	100	91.476	ENSPCIG00000003786	SMG7	100	91.301	Phascolarctos_cinereus
ENSMOCG00000020748	Smg7	99	62.593	ENSPFOG00000019219	smg7	99	62.768	Poecilia_formosa
ENSMOCG00000020748	Smg7	99	63.753	ENSPLAG00000001446	smg7	99	63.846	Poecilia_latipinna
ENSMOCG00000020748	Smg7	96	62.920	ENSPMEG00000005218	smg7	99	63.019	Poecilia_mexicana
ENSMOCG00000020748	Smg7	87	60.374	ENSPREG00000019039	smg7	91	60.767	Poecilia_reticulata
ENSMOCG00000020748	Smg7	100	95.602	ENSPPYG00000000427	SMG7	100	95.602	Pongo_abelii
ENSMOCG00000020748	Smg7	89	91.367	ENSPCAG00000008360	SMG7	88	91.367	Procavia_capensis
ENSMOCG00000020748	Smg7	100	96.345	ENSPCOG00000011996	SMG7	98	96.345	Propithecus_coquereli
ENSMOCG00000020748	Smg7	92	89.962	ENSPVAG00000000851	SMG7	89	90.288	Pteropus_vampyrus
ENSMOCG00000020748	Smg7	99	64.777	ENSPNYG00000007643	smg7	99	65.322	Pundamilia_nyererei
ENSMOCG00000020748	Smg7	99	66.898	ENSPNAG00000011374	smg7	99	66.811	Pygocentrus_nattereri
ENSMOCG00000020748	Smg7	100	97.998	ENSRNOG00000027962	Smg7	100	97.984	Rattus_norvegicus
ENSMOCG00000020748	Smg7	100	96.432	ENSRBIG00000036316	SMG7	100	95.427	Rhinopithecus_bieti
ENSMOCG00000020748	Smg7	100	96.432	ENSRROG00000035719	SMG7	100	96.407	Rhinopithecus_roxellana
ENSMOCG00000020748	Smg7	100	95.968	ENSSBOG00000023454	SMG7	100	95.968	Saimiri_boliviensis_boliviensis
ENSMOCG00000020748	Smg7	100	91.308	ENSSHAG00000013147	SMG7	100	91.045	Sarcophilus_harrisii
ENSMOCG00000020748	Smg7	99	68.293	ENSSFOG00015017252	smg7	99	75.789	Scleropages_formosus
ENSMOCG00000020748	Smg7	99	64.538	ENSSMAG00000006067	smg7	99	64.686	Scophthalmus_maximus
ENSMOCG00000020748	Smg7	95	70.793	ENSSDUG00000017543	smg7	99	64.751	Seriola_dumerili
ENSMOCG00000020748	Smg7	99	88.163	ENSSPUG00000002064	SMG7	99	87.986	Sphenodon_punctatus
ENSMOCG00000020748	Smg7	100	64.767	ENSSPAG00000008733	smg7	100	64.940	Stegastes_partitus
ENSMOCG00000020748	Smg7	100	95.968	ENSSSCG00000015558	SMG7	100	95.968	Sus_scrofa
ENSMOCG00000020748	Smg7	99	87.401	ENSTGUG00000003928	SMG7	100	87.313	Taeniopygia_guttata
ENSMOCG00000020748	Smg7	99	63.034	ENSTNIG00000002802	smg7	99	63.118	Tetraodon_nigroviridis
ENSMOCG00000020748	Smg7	77	94.068	ENSTBEG00000003220	SMG7	75	94.068	Tupaia_belangeri
ENSMOCG00000020748	Smg7	96	95.708	ENSTTRG00000014778	SMG7	94	95.708	Tursiops_truncatus
ENSMOCG00000020748	Smg7	96	91.689	ENSUAMG00000017473	SMG7	100	91.872	Ursus_americanus
ENSMOCG00000020748	Smg7	96	95.723	ENSUMAG00000016389	SMG7	100	95.905	Ursus_maritimus
ENSMOCG00000020748	Smg7	100	96.144	ENSVVUG00000008976	SMG7	100	96.318	Vulpes_vulpes
ENSMOCG00000020748	Smg7	100	69.922	ENSXETG00000012528	smg7	100	69.922	Xenopus_tropicalis
ENSMOCG00000020748	Smg7	99	63.691	ENSXMAG00000007123	smg7	99	64.237	Xiphophorus_maculatus