EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMOCG00000021536 (Gene tree)
Gene ID: 101999971
Gene Symbol: A1cf
Alias: 1810073H04Rik|ACF|apobec-1 complementation factor
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Microtus_ochrogaster
Status: putative
Strand: Plus strand
Length: 78015 bases
Position: chr8:60873718-60951732
Accession: 101999971
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMOCP00000025398	DND1_DSRM	PF14709.7	3.2e-25	1	1
ENSMOCP00000025398	RRM_1	PF00076.22	1.3e-39	1	3
ENSMOCP00000025398	RRM_1	PF00076.22	1.3e-39	2	3
ENSMOCP00000025398	RRM_1	PF00076.22	1.3e-39	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMOCT00000029268	-	3103	XM_005352139	ENSMOCP00000025398	595 (aa)	XP_005352196	UPI00067C99F5

Gene Model

Click here to download ENSMOCG00000021536's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000021536's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMOCG00000021536	A1cf	51	53.074	ENSMOCG00000003370	Syncrip	70	45.550
ENSMOCG00000021536	A1cf	69	69.524	ENSMOCG00000001188	Rbm46	89	69.524
ENSMOCG00000021536	A1cf	51	53.571	ENSMOCG00000013434	Hnrnpr	50	52.681
ENSMOCG00000021536	A1cf	76	56.485	ENSMOCG00000021170	Rbm47	89	67.376

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMOCG00000021536	A1cf	100	93.782	ENSG00000148584	A1CF	100	98.507	Homo_sapiens
ENSMOCG00000021536	A1cf	100	73.300	ENSAPOG00000008259	a1cf	100	73.134	Acanthochromis_polyacanthus
ENSMOCG00000021536	A1cf	100	91.933	ENSAMEG00000000523	A1CF	100	92.437	Ailuropoda_melanoleuca
ENSMOCG00000021536	A1cf	100	74.551	ENSACIG00000008632	a1cf	100	75.856	Amphilophus_citrinellus
ENSMOCG00000021536	A1cf	100	73.977	ENSAOCG00000023744	a1cf	93	85.629	Amphiprion_ocellaris
ENSMOCG00000021536	A1cf	100	74.959	ENSAPEG00000009537	a1cf	100	75.614	Amphiprion_percula
ENSMOCG00000021536	A1cf	100	75.081	ENSATEG00000013720	a1cf	100	76.384	Anabas_testudineus
ENSMOCG00000021536	A1cf	100	86.913	ENSAPLG00000002964	A1CF	100	86.913	Anas_platyrhynchos
ENSMOCG00000021536	A1cf	100	82.718	ENSACAG00000015269	A1CF	100	82.718	Anolis_carolinensis
ENSMOCG00000021536	A1cf	100	92.605	ENSANAG00000019974	A1CF	100	92.773	Aotus_nancymaae
ENSMOCG00000021536	A1cf	100	72.712	ENSACLG00000017428	a1cf	100	74.346	Astatotilapia_calliptera
ENSMOCG00000021536	A1cf	100	74.545	ENSAMXG00000018180	a1cf	100	74.711	Astyanax_mexicanus
ENSMOCG00000021536	A1cf	100	92.269	ENSBTAG00000021195	A1CF	100	93.040	Bos_taurus
ENSMOCG00000021536	A1cf	100	94.286	ENSCJAG00000005045	A1CF	100	94.454	Callithrix_jacchus
ENSMOCG00000021536	A1cf	100	91.933	ENSCAFG00000015581	A1CF	100	92.605	Canis_familiaris
ENSMOCG00000021536	A1cf	100	91.933	ENSCAFG00020026421	A1CF	100	92.605	Canis_lupus_dingo
ENSMOCG00000021536	A1cf	100	92.773	ENSCHIG00000020411	A1CF	100	92.773	Capra_hircus
ENSMOCG00000021536	A1cf	95	92.021	ENSTSYG00000001755	A1CF	100	91.459	Carlito_syrichta
ENSMOCG00000021536	A1cf	100	82.353	ENSCAPG00000017386	A1CF	100	82.353	Cavia_aperea
ENSMOCG00000021536	A1cf	100	93.109	ENSCPOG00000009807	A1CF	100	93.277	Cavia_porcellus
ENSMOCG00000021536	A1cf	100	94.286	ENSCCAG00000018168	A1CF	100	94.118	Cebus_capucinus
ENSMOCG00000021536	A1cf	100	92.437	ENSCATG00000043715	A1CF	100	92.269	Cercocebus_atys
ENSMOCG00000021536	A1cf	100	93.289	ENSCLAG00000010424	A1CF	100	93.289	Chinchilla_lanigera
ENSMOCG00000021536	A1cf	100	93.445	ENSCSAG00000007032	A1CF	100	93.277	Chlorocebus_sabaeus
ENSMOCG00000021536	A1cf	98	87.288	ENSCHOG00000009089	A1CF	98	87.458	Choloepus_hoffmanni
ENSMOCG00000021536	A1cf	100	86.913	ENSCPBG00000026464	A1CF	100	86.745	Chrysemys_picta_bellii
ENSMOCG00000021536	A1cf	100	93.445	ENSCANG00000038032	A1CF	100	93.277	Colobus_angolensis_palliatus
ENSMOCG00000021536	A1cf	100	96.807	ENSCGRG00001017413	A1cf	100	96.807	Cricetulus_griseus_chok1gshd
ENSMOCG00000021536	A1cf	100	95.966	ENSCGRG00000017332	A1cf	100	95.966	Cricetulus_griseus_crigri
ENSMOCG00000021536	A1cf	100	74.585	ENSCSEG00000002361	a1cf	100	75.914	Cynoglossus_semilaevis
ENSMOCG00000021536	A1cf	100	73.941	ENSCVAG00000010520	a1cf	100	75.407	Cyprinodon_variegatus
ENSMOCG00000021536	A1cf	100	78.037	ENSDARG00000002968	a1cf	100	79.368	Danio_rerio
ENSMOCG00000021536	A1cf	100	92.269	ENSDNOG00000002829	A1CF	100	92.269	Dasypus_novemcinctus
ENSMOCG00000021536	A1cf	81	92.029	ENSETEG00000012527	A1CF	81	92.029	Echinops_telfairi
ENSMOCG00000021536	A1cf	100	94.305	ENSEASG00005012924	A1CF	100	94.472	Equus_asinus_asinus
ENSMOCG00000021536	A1cf	100	93.802	ENSECAG00000010424	A1CF	100	93.970	Equus_caballus
ENSMOCG00000021536	A1cf	78	79.443	ENSEEUG00000000013	A1CF	97	80.310	Erinaceus_europaeus
ENSMOCG00000021536	A1cf	100	78.702	ENSELUG00000003159	a1cf	100	79.534	Esox_lucius
ENSMOCG00000021536	A1cf	100	90.084	ENSFCAG00000011179	A1CF	100	90.252	Felis_catus
ENSMOCG00000021536	A1cf	100	85.403	ENSFALG00000013183	A1CF	100	85.235	Ficedula_albicollis
ENSMOCG00000021536	A1cf	100	91.429	ENSFDAG00000019371	A1CF	100	91.429	Fukomys_damarensis
ENSMOCG00000021536	A1cf	100	69.381	ENSFHEG00000019652	a1cf	96	82.812	Fundulus_heteroclitus
ENSMOCG00000021536	A1cf	100	72.158	ENSGMOG00000018943	a1cf	100	71.617	Gadus_morhua
ENSMOCG00000021536	A1cf	95	86.195	ENSGALG00000003765	A1CF	97	86.018	Gallus_gallus
ENSMOCG00000021536	A1cf	100	69.079	ENSGAFG00000014868	a1cf	100	70.066	Gambusia_affinis
ENSMOCG00000021536	A1cf	100	74.262	ENSGACG00000010241	a1cf	100	74.426	Gasterosteus_aculeatus
ENSMOCG00000021536	A1cf	94	86.856	ENSGAGG00000016508	A1CF	97	86.679	Gopherus_agassizii
ENSMOCG00000021536	A1cf	100	93.950	ENSGGOG00000009670	A1CF	100	93.950	Gorilla_gorilla
ENSMOCG00000021536	A1cf	100	74.225	ENSHBUG00000021959	a1cf	100	76.183	Haplochromis_burtoni
ENSMOCG00000021536	A1cf	100	93.277	ENSHGLG00000008955	A1CF	100	93.277	Heterocephalus_glaber_female
ENSMOCG00000021536	A1cf	100	92.605	ENSHGLG00100000518	A1CF	100	92.605	Heterocephalus_glaber_male
ENSMOCG00000021536	A1cf	100	70.358	ENSHCOG00000017669	a1cf	100	72.683	Hippocampus_comes
ENSMOCG00000021536	A1cf	89	82.714	ENSIPUG00000010367	a1cf	96	83.022	Ictalurus_punctatus
ENSMOCG00000021536	A1cf	100	76.585	ENSKMAG00000006568	a1cf	100	77.398	Kryptolebias_marmoratus
ENSMOCG00000021536	A1cf	99	74.877	ENSLBEG00000020994	a1cf	98	76.190	Labrus_bergylta
ENSMOCG00000021536	A1cf	100	81.970	ENSLACG00000008061	A1CF	100	81.469	Latimeria_chalumnae
ENSMOCG00000021536	A1cf	100	81.333	ENSLOCG00000006302	a1cf	100	81.167	Lepisosteus_oculatus
ENSMOCG00000021536	A1cf	100	93.109	ENSLAFG00000015462	A1CF	100	93.109	Loxodonta_africana
ENSMOCG00000021536	A1cf	100	92.437	ENSMFAG00000035948	A1CF	100	92.269	Macaca_fascicularis
ENSMOCG00000021536	A1cf	100	92.437	ENSMMUG00000007077	A1CF	100	92.269	Macaca_mulatta
ENSMOCG00000021536	A1cf	100	92.269	ENSMNEG00000031454	A1CF	100	92.101	Macaca_nemestrina
ENSMOCG00000021536	A1cf	100	93.782	ENSMLEG00000037223	A1CF	100	93.613	Mandrillus_leucophaeus
ENSMOCG00000021536	A1cf	100	72.995	ENSMAMG00000010402	a1cf	100	75.000	Mastacembelus_armatus
ENSMOCG00000021536	A1cf	100	76.206	ENSMZEG00005013245	a1cf	100	77.038	Maylandia_zebra
ENSMOCG00000021536	A1cf	100	86.432	ENSMGAG00000001507	A1CF	100	86.265	Meleagris_gallopavo
ENSMOCG00000021536	A1cf	100	95.966	ENSMAUG00000007422	A1cf	100	95.966	Mesocricetus_auratus
ENSMOCG00000021536	A1cf	100	91.472	ENSMICG00000003377	A1CF	100	91.806	Microcebus_murinus
ENSMOCG00000021536	A1cf	100	66.448	ENSMMOG00000009422	a1cf	100	67.921	Mola_mola
ENSMOCG00000021536	A1cf	92	89.031	ENSMODG00000016478	A1CF	97	90.170	Monodelphis_domestica
ENSMOCG00000021536	A1cf	100	72.167	ENSMALG00000012992	a1cf	100	72.167	Monopterus_albus
ENSMOCG00000021536	A1cf	100	95.630	MGP_CAROLIEiJ_G0022873	A1cf	100	95.630	Mus_caroli
ENSMOCG00000021536	A1cf	100	95.630	ENSMUSG00000052595	A1cf	99	97.368	Mus_musculus
ENSMOCG00000021536	A1cf	100	94.790	MGP_PahariEiJ_G0014366	A1cf	100	94.790	Mus_pahari
ENSMOCG00000021536	A1cf	100	95.294	MGP_SPRETEiJ_G0023792	A1cf	100	95.294	Mus_spretus
ENSMOCG00000021536	A1cf	100	86.723	ENSMPUG00000016971	A1CF	100	86.555	Mustela_putorius_furo
ENSMOCG00000021536	A1cf	100	92.941	ENSMLUG00000016071	A1CF	100	92.941	Myotis_lucifugus
ENSMOCG00000021536	A1cf	100	95.126	ENSNGAG00000015136	A1cf	100	95.126	Nannospalax_galili
ENSMOCG00000021536	A1cf	100	74.388	ENSNBRG00000001712	a1cf	100	76.346	Neolamprologus_brichardi
ENSMOCG00000021536	A1cf	100	94.622	ENSNLEG00000012028	A1CF	100	94.622	Nomascus_leucogenys
ENSMOCG00000021536	A1cf	94	86.501	ENSMEUG00000015909	A1CF	100	86.323	Notamacropus_eugenii
ENSMOCG00000021536	A1cf	88	83.238	ENSOPRG00000010667	A1CF	97	83.208	Ochotona_princeps
ENSMOCG00000021536	A1cf	100	74.715	ENSONIG00000019105	a1cf	100	75.856	Oreochromis_niloticus
ENSMOCG00000021536	A1cf	78	87.152	ENSOANG00000007360	A1CF	99	87.152	Ornithorhynchus_anatinus
ENSMOCG00000021536	A1cf	100	91.611	ENSOCUG00000011587	A1CF	100	92.282	Oryctolagus_cuniculus
ENSMOCG00000021536	A1cf	100	73.529	ENSORLG00000013342	a1cf	100	73.366	Oryzias_latipes
ENSMOCG00000021536	A1cf	100	74.715	ENSORLG00020000586	a1cf	100	74.756	Oryzias_latipes_hni
ENSMOCG00000021536	A1cf	100	74.715	ENSORLG00015018569	a1cf	100	74.756	Oryzias_latipes_hsok
ENSMOCG00000021536	A1cf	100	73.650	ENSOMEG00000013531	a1cf	100	73.650	Oryzias_melastigma
ENSMOCG00000021536	A1cf	100	92.101	ENSOGAG00000012884	A1CF	100	92.605	Otolemur_garnettii
ENSMOCG00000021536	A1cf	100	92.773	ENSOARG00000013695	A1CF	100	92.773	Ovis_aries
ENSMOCG00000021536	A1cf	97	91.854	ENSPPAG00000028115	A1CF	100	95.749	Pan_paniscus
ENSMOCG00000021536	A1cf	100	91.765	ENSPPRG00000012180	A1CF	100	91.933	Panthera_pardus
ENSMOCG00000021536	A1cf	100	91.765	ENSPTIG00000021223	A1CF	100	91.933	Panthera_tigris_altaica
ENSMOCG00000021536	A1cf	100	93.782	ENSPTRG00000002508	A1CF	100	93.782	Pan_troglodytes
ENSMOCG00000021536	A1cf	100	92.437	ENSPANG00000021988	A1CF	100	92.269	Papio_anubis
ENSMOCG00000021536	A1cf	100	80.532	ENSPKIG00000025176	a1cf	100	80.366	Paramormyrops_kingsleyae
ENSMOCG00000021536	A1cf	100	85.235	ENSPSIG00000010318	A1CF	100	85.067	Pelodiscus_sinensis
ENSMOCG00000021536	A1cf	88	71.619	ENSPMGG00000013359	a1cf	99	68.089	Periophthalmus_magnuspinnatus
ENSMOCG00000021536	A1cf	100	96.134	ENSPEMG00000015021	A1cf	100	96.134	Peromyscus_maniculatus_bairdii
ENSMOCG00000021536	A1cf	100	86.577	ENSPCIG00000002175	A1CF	100	86.409	Phascolarctos_cinereus
ENSMOCG00000021536	A1cf	100	75.081	ENSPFOG00000007437	-	100	76.547	Poecilia_formosa
ENSMOCG00000021536	A1cf	100	75.244	ENSPFOG00000006683	a1cf	100	76.710	Poecilia_formosa
ENSMOCG00000021536	A1cf	100	73.941	ENSPLAG00000001210	-	100	75.407	Poecilia_latipinna
ENSMOCG00000021536	A1cf	100	73.941	ENSPLAG00000000026	a1cf	100	75.407	Poecilia_latipinna
ENSMOCG00000021536	A1cf	100	66.340	ENSPMEG00000000921	a1cf	100	67.810	Poecilia_mexicana
ENSMOCG00000021536	A1cf	100	67.484	ENSPMEG00000015529	-	100	68.954	Poecilia_mexicana
ENSMOCG00000021536	A1cf	100	74.756	ENSPREG00000016298	a1cf	100	76.221	Poecilia_reticulata
ENSMOCG00000021536	A1cf	100	93.109	ENSPPYG00000002819	A1CF	100	93.109	Pongo_abelii
ENSMOCG00000021536	A1cf	79	70.551	ENSPCAG00000006463	A1CF	70	83.673	Procavia_capensis
ENSMOCG00000021536	A1cf	100	92.953	ENSPCOG00000024172	A1CF	100	93.456	Propithecus_coquereli
ENSMOCG00000021536	A1cf	100	75.367	ENSPNYG00000017944	a1cf	100	77.325	Pundamilia_nyererei
ENSMOCG00000021536	A1cf	100	79.967	ENSPNAG00000007704	a1cf	100	79.801	Pygocentrus_nattereri
ENSMOCG00000021536	A1cf	100	94.454	ENSRNOG00000033195	A1cf	100	94.454	Rattus_norvegicus
ENSMOCG00000021536	A1cf	100	87.270	ENSRBIG00000042892	A1CF	100	89.824	Rhinopithecus_bieti
ENSMOCG00000021536	A1cf	100	93.782	ENSRROG00000041398	A1CF	100	93.613	Rhinopithecus_roxellana
ENSMOCG00000021536	A1cf	100	94.286	ENSSBOG00000021930	A1CF	100	94.286	Saimiri_boliviensis_boliviensis
ENSMOCG00000021536	A1cf	100	88.087	ENSSHAG00000005096	A1CF	100	87.752	Sarcophilus_harrisii
ENSMOCG00000021536	A1cf	100	78.939	ENSSFOG00015011774	a1cf	100	79.104	Scleropages_formosus
ENSMOCG00000021536	A1cf	100	74.919	ENSSMAG00000013271	a1cf	100	75.244	Scophthalmus_maximus
ENSMOCG00000021536	A1cf	100	76.119	ENSSDUG00000013930	a1cf	100	77.114	Seriola_dumerili
ENSMOCG00000021536	A1cf	100	69.802	ENSSLDG00000004290	a1cf	100	69.472	Seriola_lalandi_dorsalis
ENSMOCG00000021536	A1cf	95	81.979	ENSSARG00000005940	A1CF	96	81.979	Sorex_araneus
ENSMOCG00000021536	A1cf	95	86.116	ENSSPUG00000006797	A1CF	95	85.589	Sphenodon_punctatus
ENSMOCG00000021536	A1cf	100	93.782	ENSSSCG00000010431	A1CF	100	93.782	Sus_scrofa
ENSMOCG00000021536	A1cf	100	86.957	ENSTGUG00000005090	A1CF	100	86.957	Taeniopygia_guttata
ENSMOCG00000021536	A1cf	100	74.225	ENSTRUG00000001982	a1cf	100	73.736	Takifugu_rubripes
ENSMOCG00000021536	A1cf	100	74.472	ENSTNIG00000003580	a1cf	100	74.472	Tetraodon_nigroviridis
ENSMOCG00000021536	A1cf	97	85.269	ENSTTRG00000013190	A1CF	95	85.269	Tursiops_truncatus
ENSMOCG00000021536	A1cf	100	91.092	ENSUAMG00000020065	A1CF	100	91.092	Ursus_americanus
ENSMOCG00000021536	A1cf	100	92.101	ENSUMAG00000011162	A1CF	100	92.269	Ursus_maritimus
ENSMOCG00000021536	A1cf	87	87.140	ENSVPAG00000006130	A1CF	86	87.140	Vicugna_pacos
ENSMOCG00000021536	A1cf	100	91.261	ENSVVUG00000002504	A1CF	100	91.429	Vulpes_vulpes
ENSMOCG00000021536	A1cf	100	77.500	ENSXETG00000006611	a1cf	100	77.167	Xenopus_tropicalis
ENSMOCG00000021536	A1cf	100	75.246	ENSXCOG00000003302	a1cf	100	76.230	Xiphophorus_couchianus
ENSMOCG00000021536	A1cf	100	76.393	ENSXMAG00000016703	a1cf	100	77.377	Xiphophorus_maculatus