EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMOCG00000021576 (Gene tree)
Gene ID: 101996138
Gene Symbol: Apobec3
Alias: CEM15|Gm20117|Rfv-3|Rfv3
Full Name: DNA dC->dU-editing enzyme APOBEC3-like
Gene Type: protein_coding
Species: Microtus_ochrogaster
Status: putative
Strand: Minus strand
Length: 15149 bases
Position: chr15:14016120-14031268
Accession: 101996138
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMOCP00000025475	APOBEC_N	PF08210.11	2.6e-87	1	2
ENSMOCP00000025475	APOBEC_N	PF08210.11	2.6e-87	2	2
ENSMOCP00000025473	APOBEC_N	PF08210.11	3.1e-87	1	2
ENSMOCP00000025473	APOBEC_N	PF08210.11	3.1e-87	2	2
ENSMOCP00000025475	APOBEC_C	PF05240.14	5.9e-57	1	2
ENSMOCP00000025475	APOBEC_C	PF05240.14	5.9e-57	2	2
ENSMOCP00000025473	APOBEC_C	PF05240.14	6.6e-57	1	2
ENSMOCP00000025473	APOBEC_C	PF05240.14	6.6e-57	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMOCT00000029346	-	1209	-	ENSMOCP00000025475	403 (aa)	-	-
ENSMOCT00000029344	-	1263	XM_005354188	ENSMOCP00000025473	420 (aa)	XP_005354245	-

Gene Model

Click here to download ENSMOCG00000021576's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000021576's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMOCG00000021576	Apobec3	75	40.385	ENSMOCG00000022460	Aicda	84	40.385
ENSMOCG00000021576	Apobec3	87	38.220	ENSMOCG00000001904	Apobec2	83	38.220

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMOCG00000021576	Apobec3	83	48.333	ENSG00000100298	APOBEC3H	99	48.901	Homo_sapiens
ENSMOCG00000021576	Apobec3	91	42.131	ENSAMEG00000010818	-	98	42.155	Ailuropoda_melanoleuca
ENSMOCG00000021576	Apobec3	78	54.348	ENSANAG00000025410	APOBEC3H	90	51.724	Aotus_nancymaae
ENSMOCG00000021576	Apobec3	91	44.118	ENSBTAG00000007755	APOBEC3H	93	44.054	Bos_taurus
ENSMOCG00000021576	Apobec3	78	51.124	ENSCJAG00000012524	APOBEC3H	89	50.562	Callithrix_jacchus
ENSMOCG00000021576	Apobec3	88	50.581	ENSCAFG00000001361	APOBEC3Z3	99	49.474	Canis_familiaris
ENSMOCG00000021576	Apobec3	87	49.143	ENSCAFG00020002584	-	91	50.000	Canis_lupus_dingo
ENSMOCG00000021576	Apobec3	90	44.595	ENSCHIG00000026580	-	96	44.595	Capra_hircus
ENSMOCG00000021576	Apobec3	82	50.286	ENSTSYG00000032894	-	100	50.286	Carlito_syrichta
ENSMOCG00000021576	Apobec3	95	47.317	ENSCPOG00000009257	-	100	41.395	Cavia_porcellus
ENSMOCG00000021576	Apobec3	79	52.941	ENSCCAG00000008525	APOBEC3H	94	52.217	Cebus_capucinus
ENSMOCG00000021576	Apobec3	83	52.222	ENSCATG00000030302	APOBEC3H	99	50.556	Cercocebus_atys
ENSMOCG00000021576	Apobec3	83	51.546	ENSCLAG00000016615	-	96	50.515	Chinchilla_lanigera
ENSMOCG00000021576	Apobec3	84	52.261	ENSCSAG00000006371	APOBEC3H	94	51.759	Chlorocebus_sabaeus
ENSMOCG00000021576	Apobec3	100	75.878	ENSCGRG00001022976	Apobec3	100	74.941	Cricetulus_griseus_chok1gshd
ENSMOCG00000021576	Apobec3	100	75.878	ENSCGRG00000005621	Apobec3	100	74.941	Cricetulus_griseus_crigri
ENSMOCG00000021576	Apobec3	99	51.834	ENSDORG00000027271	-	100	58.763	Dipodomys_ordii
ENSMOCG00000021576	Apobec3	96	48.901	ENSECAG00000007726	APOBEC3H	98	47.475	Equus_caballus
ENSMOCG00000021576	Apobec3	82	52.356	ENSFCAG00000005251	APOBEC3Z3	87	52.381	Felis_catus
ENSMOCG00000021576	Apobec3	92	55.191	ENSSTOG00000007125	-	97	55.618	Ictidomys_tridecemlineatus
ENSMOCG00000021576	Apobec3	96	56.354	ENSJJAG00000016840	-	99	51.306	Jaculus_jaculus
ENSMOCG00000021576	Apobec3	97	40.253	ENSLAFG00000027404	-	99	40.000	Loxodonta_africana
ENSMOCG00000021576	Apobec3	84	51.759	ENSMFAG00000031827	APOBEC3H	94	51.256	Macaca_fascicularis
ENSMOCG00000021576	Apobec3	84	52.261	ENSMMUG00000001016	APOBEC3H	94	51.256	Macaca_mulatta
ENSMOCG00000021576	Apobec3	84	51.759	ENSMNEG00000039259	APOBEC3H	94	51.256	Macaca_nemestrina
ENSMOCG00000021576	Apobec3	84	50.754	ENSMLEG00000033417	APOBEC3H	94	50.754	Mandrillus_leucophaeus
ENSMOCG00000021576	Apobec3	100	75.000	ENSMAUG00000011683	Apobec3	100	74.299	Mesocricetus_auratus
ENSMOCG00000021576	Apobec3	100	62.500	MGP_CAROLIEiJ_G0020029	Apobec3	100	66.667	Mus_caroli
ENSMOCG00000021576	Apobec3	100	63.208	ENSMUSG00000009585	Apobec3	100	66.667	Mus_musculus
ENSMOCG00000021576	Apobec3	100	64.637	MGP_PahariEiJ_G0020031	-	100	63.466	Mus_pahari
ENSMOCG00000021576	Apobec3	100	63.443	MGP_SPRETEiJ_G0020927	Apobec3	100	69.048	Mus_spretus
ENSMOCG00000021576	Apobec3	94	45.220	ENSMPUG00000013239	-	98	44.140	Mustela_putorius_furo
ENSMOCG00000021576	Apobec3	99	60.563	ENSNGAG00000018998	Apobec3	99	61.381	Nannospalax_galili
ENSMOCG00000021576	Apobec3	80	50.251	ENSNLEG00000015218	-	94	49.246	Nomascus_leucogenys
ENSMOCG00000021576	Apobec3	99	40.686	ENSOCUG00000023913	-	100	40.482	Oryctolagus_cuniculus
ENSMOCG00000021576	Apobec3	91	44.385	ENSOARG00000016290	APOBEC3F	97	44.595	Ovis_aries
ENSMOCG00000021576	Apobec3	83	50.000	ENSPPAG00000036522	APOBEC3H	99	50.549	Pan_paniscus
ENSMOCG00000021576	Apobec3	80	45.810	ENSPPRG00000003675	-	96	45.810	Panthera_pardus
ENSMOCG00000021576	Apobec3	81	55.172	ENSPPRG00000003941	-	98	53.646	Panthera_pardus
ENSMOCG00000021576	Apobec3	81	55.172	ENSPTIG00000010283	-	98	53.646	Panthera_tigris_altaica
ENSMOCG00000021576	Apobec3	83	50.000	ENSPTRG00000014390	APOBEC3H	99	50.549	Pan_troglodytes
ENSMOCG00000021576	Apobec3	84	51.256	ENSPANG00000010774	APOBEC3H	94	50.754	Papio_anubis
ENSMOCG00000021576	Apobec3	99	71.918	ENSPEMG00000000456	Apobec3	99	71.005	Peromyscus_maniculatus_bairdii
ENSMOCG00000021576	Apobec3	80	50.754	ENSPPYG00000011834	-	94	49.749	Pongo_abelii
ENSMOCG00000021576	Apobec3	74	42.308	ENSPCAG00000015655	-	100	42.308	Procavia_capensis
ENSMOCG00000021576	Apobec3	61	49.219	ENSPVAG00000024161	-	95	49.219	Pteropus_vampyrus
ENSMOCG00000021576	Apobec3	61	47.656	ENSPVAG00000024267	-	95	47.656	Pteropus_vampyrus
ENSMOCG00000021576	Apobec3	86	47.429	ENSPVAG00000009462	-	100	47.429	Pteropus_vampyrus
ENSMOCG00000021576	Apobec3	99	65.281	ENSRNOG00000016852	Apobec3	100	65.291	Rattus_norvegicus
ENSMOCG00000021576	Apobec3	80	50.251	ENSRBIG00000029088	APOBEC3H	94	49.749	Rhinopithecus_bieti
ENSMOCG00000021576	Apobec3	80	50.754	ENSRROG00000024699	APOBEC3H	94	49.749	Rhinopithecus_roxellana
ENSMOCG00000021576	Apobec3	78	54.645	ENSSBOG00000030005	APOBEC3H	99	53.571	Saimiri_boliviensis_boliviensis
ENSMOCG00000021576	Apobec3	99	43.066	ENSSSCG00000000091	APOBEC3B	96	44.444	Sus_scrofa
ENSMOCG00000021576	Apobec3	80	50.000	ENSTBEG00000001532	-	89	51.974	Tupaia_belangeri
ENSMOCG00000021576	Apobec3	82	49.143	ENSTTRG00000001266	-	86	50.667	Tursiops_truncatus
ENSMOCG00000021576	Apobec3	86	49.749	ENSUAMG00000004427	-	90	49.246	Ursus_americanus
ENSMOCG00000021576	Apobec3	82	54.802	ENSUMAG00000014435	-	99	50.711	Ursus_maritimus
ENSMOCG00000021576	Apobec3	58	48.800	ENSVPAG00000011108	-	99	48.800	Vicugna_pacos