EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMOCG00000022647 (Gene tree)
Gene ID: 101985571
Gene Symbol: Usb1
Alias: AA960436
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Microtus_ochrogaster
Status: putative
Strand: Minus strand
Length: 11307 bases
Position: chr4:13866103-13877409
Accession: 101985571
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMOCP00000027021	HVSL	PF09749.9	7.9e-65	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMOCT00000030919	-	1188	XM_005345569	ENSMOCP00000027021	267 (aa)	XP_005345626	-

Gene Model

Click here to download ENSMOCG00000022647's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000022647's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMOCG00000022647	Usb1	100	83.146	ENSG00000103005	USB1	100	86.449	Homo_sapiens
ENSMOCG00000022647	Usb1	98	48.746	ENSAPOG00000011942	usb1	99	48.746	Acanthochromis_polyacanthus
ENSMOCG00000022647	Usb1	100	81.784	ENSAMEG00000017205	USB1	100	81.784	Ailuropoda_melanoleuca
ENSMOCG00000022647	Usb1	84	55.804	ENSACIG00000012234	usb1	99	51.481	Amphilophus_citrinellus
ENSMOCG00000022647	Usb1	85	54.626	ENSAOCG00000014831	usb1	99	49.110	Amphiprion_ocellaris
ENSMOCG00000022647	Usb1	85	55.066	ENSAPEG00000000296	usb1	99	49.466	Amphiprion_percula
ENSMOCG00000022647	Usb1	95	50.988	ENSATEG00000009348	usb1	99	49.286	Anabas_testudineus
ENSMOCG00000022647	Usb1	84	69.604	ENSAPLG00000002756	USB1	100	70.044	Anas_platyrhynchos
ENSMOCG00000022647	Usb1	85	62.445	ENSACAG00000015481	USB1	100	62.445	Anolis_carolinensis
ENSMOCG00000022647	Usb1	100	84.270	ENSANAG00000035640	USB1	100	84.270	Aotus_nancymaae
ENSMOCG00000022647	Usb1	84	54.911	ENSACLG00000020586	usb1	99	50.357	Astatotilapia_calliptera
ENSMOCG00000022647	Usb1	84	52.466	ENSAMXG00000040146	usb1	95	46.713	Astyanax_mexicanus
ENSMOCG00000022647	Usb1	100	79.775	ENSBTAG00000015758	USB1	100	79.775	Bos_taurus
ENSMOCG00000022647	Usb1	100	83.895	ENSCJAG00000011733	USB1	100	83.895	Callithrix_jacchus
ENSMOCG00000022647	Usb1	99	78.309	ENSCAFG00000008556	USB1	73	78.676	Canis_familiaris
ENSMOCG00000022647	Usb1	99	78.810	ENSCAFG00020009263	USB1	99	78.810	Canis_lupus_dingo
ENSMOCG00000022647	Usb1	100	79.026	ENSCHIG00000024290	USB1	100	79.026	Capra_hircus
ENSMOCG00000022647	Usb1	100	84.270	ENSTSYG00000006997	USB1	100	84.270	Carlito_syrichta
ENSMOCG00000022647	Usb1	87	66.379	ENSCAPG00000009057	USB1	100	66.379	Cavia_aperea
ENSMOCG00000022647	Usb1	100	79.182	ENSCPOG00000014325	USB1	100	79.182	Cavia_porcellus
ENSMOCG00000022647	Usb1	100	84.270	ENSCCAG00000022132	USB1	100	84.270	Cebus_capucinus
ENSMOCG00000022647	Usb1	100	83.895	ENSCATG00000032174	USB1	100	84.328	Cercocebus_atys
ENSMOCG00000022647	Usb1	66	84.091	ENSCLAG00000007363	USB1	100	84.091	Chinchilla_lanigera
ENSMOCG00000022647	Usb1	100	84.270	ENSCSAG00000004783	USB1	100	84.701	Chlorocebus_sabaeus
ENSMOCG00000022647	Usb1	90	65.417	ENSCPBG00000026943	USB1	100	62.366	Chrysemys_picta_bellii
ENSMOCG00000022647	Usb1	82	32.743	ENSCSAVG00000000894	-	81	32.743	Ciona_savignyi
ENSMOCG00000022647	Usb1	100	82.772	ENSCANG00000037135	USB1	100	83.209	Colobus_angolensis_palliatus
ENSMOCG00000022647	Usb1	100	91.791	ENSCGRG00001011243	USB1	100	91.791	Cricetulus_griseus_chok1gshd
ENSMOCG00000022647	Usb1	100	91.791	ENSCGRG00000013252	USB1	100	91.791	Cricetulus_griseus_crigri
ENSMOCG00000022647	Usb1	98	49.455	ENSCSEG00000013881	usb1	99	49.455	Cynoglossus_semilaevis
ENSMOCG00000022647	Usb1	84	50.435	ENSCVAG00000009252	usb1	97	50.000	Cyprinodon_variegatus
ENSMOCG00000022647	Usb1	90	49.791	ENSDARG00000003841	usb1	99	46.545	Danio_rerio
ENSMOCG00000022647	Usb1	100	81.648	ENSDORG00000001888	Usb1	100	81.648	Dipodomys_ordii
ENSMOCG00000022647	Usb1	76	39.806	FBgn0037713	CG16790	97	35.531	Drosophila_melanogaster
ENSMOCG00000022647	Usb1	100	65.918	ENSETEG00000019682	USB1	100	65.918	Echinops_telfairi
ENSMOCG00000022647	Usb1	83	50.000	ENSEBUG00000005889	usb1	78	50.000	Eptatretus_burgeri
ENSMOCG00000022647	Usb1	100	82.022	ENSEASG00005005484	USB1	100	82.022	Equus_asinus_asinus
ENSMOCG00000022647	Usb1	100	82.397	ENSECAG00000019493	USB1	91	82.397	Equus_caballus
ENSMOCG00000022647	Usb1	66	78.409	ENSEEUG00000000154	USB1	66	78.409	Erinaceus_europaeus
ENSMOCG00000022647	Usb1	93	49.200	ENSELUG00000010974	usb1	99	46.763	Esox_lucius
ENSMOCG00000022647	Usb1	100	83.146	ENSFCAG00000002693	USB1	100	83.146	Felis_catus
ENSMOCG00000022647	Usb1	78	69.378	ENSFALG00000006876	USB1	99	61.364	Ficedula_albicollis
ENSMOCG00000022647	Usb1	100	80.597	ENSFDAG00000010052	USB1	100	80.597	Fukomys_damarensis
ENSMOCG00000022647	Usb1	85	47.154	ENSFHEG00000012334	usb1	96	47.154	Fundulus_heteroclitus
ENSMOCG00000022647	Usb1	84	53.363	ENSGMOG00000004228	usb1	99	53.363	Gadus_morhua
ENSMOCG00000022647	Usb1	84	66.518	ENSGALG00000035604	USB1	99	61.887	Gallus_gallus
ENSMOCG00000022647	Usb1	98	50.909	ENSGAFG00000021890	usb1	99	50.909	Gambusia_affinis
ENSMOCG00000022647	Usb1	84	52.232	ENSGACG00000003257	usb1	99	49.819	Gasterosteus_aculeatus
ENSMOCG00000022647	Usb1	100	63.504	ENSGAGG00000022572	USB1	100	63.504	Gopherus_agassizii
ENSMOCG00000022647	Usb1	100	83.521	ENSGGOG00000017147	USB1	100	83.521	Gorilla_gorilla
ENSMOCG00000022647	Usb1	85	55.066	ENSHBUG00000009823	usb1	99	51.254	Haplochromis_burtoni
ENSMOCG00000022647	Usb1	100	82.463	ENSHGLG00000016078	USB1	98	82.463	Heterocephalus_glaber_female
ENSMOCG00000022647	Usb1	100	82.463	ENSHGLG00100005562	USB1	98	82.463	Heterocephalus_glaber_male
ENSMOCG00000022647	Usb1	81	56.481	ENSHCOG00000015633	usb1	99	51.724	Hippocampus_comes
ENSMOCG00000022647	Usb1	84	54.464	ENSIPUG00000008601	usb1	99	47.917	Ictalurus_punctatus
ENSMOCG00000022647	Usb1	100	81.319	ENSSTOG00000007548	USB1	100	81.319	Ictidomys_tridecemlineatus
ENSMOCG00000022647	Usb1	100	86.142	ENSJJAG00000021859	Usb1	100	86.142	Jaculus_jaculus
ENSMOCG00000022647	Usb1	85	53.304	ENSKMAG00000007200	usb1	99	48.214	Kryptolebias_marmoratus
ENSMOCG00000022647	Usb1	75	52.764	ENSLBEG00000008452	usb1	82	46.091	Labrus_bergylta
ENSMOCG00000022647	Usb1	77	59.135	ENSLACG00000000105	USB1	91	52.652	Latimeria_chalumnae
ENSMOCG00000022647	Usb1	96	53.696	ENSLOCG00000000465	usb1	99	50.877	Lepisosteus_oculatus
ENSMOCG00000022647	Usb1	100	64.815	ENSLAFG00000002267	USB1	100	65.556	Loxodonta_africana
ENSMOCG00000022647	Usb1	100	84.270	ENSMFAG00000003926	USB1	100	84.701	Macaca_fascicularis
ENSMOCG00000022647	Usb1	100	84.270	ENSMMUG00000022669	USB1	100	84.701	Macaca_mulatta
ENSMOCG00000022647	Usb1	100	83.895	ENSMNEG00000042487	USB1	100	84.328	Macaca_nemestrina
ENSMOCG00000022647	Usb1	100	84.270	ENSMLEG00000028756	USB1	100	84.701	Mandrillus_leucophaeus
ENSMOCG00000022647	Usb1	98	50.181	ENSMAMG00000015092	usb1	99	50.181	Mastacembelus_armatus
ENSMOCG00000022647	Usb1	84	54.911	ENSMZEG00005010008	usb1	99	50.896	Maylandia_zebra
ENSMOCG00000022647	Usb1	100	90.637	ENSMAUG00000007832	Usb1	100	90.637	Mesocricetus_auratus
ENSMOCG00000022647	Usb1	100	82.397	ENSMICG00000004900	USB1	100	83.146	Microcebus_murinus
ENSMOCG00000022647	Usb1	85	52.193	ENSMMOG00000000490	usb1	99	49.618	Mola_mola
ENSMOCG00000022647	Usb1	100	63.838	ENSMODG00000014067	USB1	100	66.421	Monodelphis_domestica
ENSMOCG00000022647	Usb1	85	53.304	ENSMALG00000005930	usb1	99	48.754	Monopterus_albus
ENSMOCG00000022647	Usb1	100	87.266	MGP_CAROLIEiJ_G0031421	Usb1	100	87.266	Mus_caroli
ENSMOCG00000022647	Usb1	100	87.640	ENSMUSG00000031792	Usb1	100	87.640	Mus_musculus
ENSMOCG00000022647	Usb1	100	88.015	MGP_PahariEiJ_G0023019	Usb1	100	88.015	Mus_pahari
ENSMOCG00000022647	Usb1	100	88.015	MGP_SPRETEiJ_G0032540	Usb1	100	88.015	Mus_spretus
ENSMOCG00000022647	Usb1	100	79.554	ENSMPUG00000004684	USB1	96	79.926	Mustela_putorius_furo
ENSMOCG00000022647	Usb1	87	84.416	ENSMLUG00000007400	USB1	100	84.416	Myotis_lucifugus
ENSMOCG00000022647	Usb1	100	85.502	ENSNGAG00000009703	Usb1	100	85.874	Nannospalax_galili
ENSMOCG00000022647	Usb1	87	49.138	ENSNBRG00000008747	usb1	99	53.738	Neolamprologus_brichardi
ENSMOCG00000022647	Usb1	94	82.937	ENSNLEG00000003340	USB1	100	82.937	Nomascus_leucogenys
ENSMOCG00000022647	Usb1	57	58.170	ENSMEUG00000003328	-	100	59.477	Notamacropus_eugenii
ENSMOCG00000022647	Usb1	63	100.000	ENSOPRG00000011803	USB1	72	100.000	Ochotona_princeps
ENSMOCG00000022647	Usb1	100	78.652	ENSODEG00000016214	USB1	100	78.652	Octodon_degus
ENSMOCG00000022647	Usb1	98	51.439	ENSONIG00000011063	usb1	99	51.439	Oreochromis_niloticus
ENSMOCG00000022647	Usb1	84	72.000	ENSOANG00000012118	USB1	94	72.000	Ornithorhynchus_anatinus
ENSMOCG00000022647	Usb1	84	51.786	ENSORLG00000012479	usb1	99	48.529	Oryzias_latipes
ENSMOCG00000022647	Usb1	84	51.786	ENSORLG00020018671	usb1	99	47.426	Oryzias_latipes_hni
ENSMOCG00000022647	Usb1	84	51.786	ENSORLG00015009679	usb1	99	47.794	Oryzias_latipes_hsok
ENSMOCG00000022647	Usb1	84	52.232	ENSOMEG00000012930	usb1	99	47.273	Oryzias_melastigma
ENSMOCG00000022647	Usb1	100	76.866	ENSOGAG00000003273	USB1	100	76.866	Otolemur_garnettii
ENSMOCG00000022647	Usb1	92	78.862	ENSOARG00000001107	USB1	94	78.862	Ovis_aries
ENSMOCG00000022647	Usb1	100	83.895	ENSPPAG00000042137	USB1	100	83.895	Pan_paniscus
ENSMOCG00000022647	Usb1	100	82.772	ENSPPRG00000024797	USB1	100	82.772	Panthera_pardus
ENSMOCG00000022647	Usb1	100	82.772	ENSPTIG00000007506	USB1	100	82.772	Panthera_tigris_altaica
ENSMOCG00000022647	Usb1	100	76.030	ENSPTRG00000008172	USB1	100	86.916	Pan_troglodytes
ENSMOCG00000022647	Usb1	100	84.270	ENSPANG00000025138	USB1	100	84.701	Papio_anubis
ENSMOCG00000022647	Usb1	96	52.140	ENSPKIG00000015109	usb1	99	48.136	Paramormyrops_kingsleyae
ENSMOCG00000022647	Usb1	84	52.212	ENSPSIG00000004305	USB1	100	52.212	Pelodiscus_sinensis
ENSMOCG00000022647	Usb1	84	52.466	ENSPMGG00000017725	usb1	98	49.049	Periophthalmus_magnuspinnatus
ENSMOCG00000022647	Usb1	100	90.809	ENSPEMG00000016183	Usb1	100	90.809	Peromyscus_maniculatus_bairdii
ENSMOCG00000022647	Usb1	91	48.374	ENSPMAG00000000462	usb1	99	48.374	Petromyzon_marinus
ENSMOCG00000022647	Usb1	98	50.000	ENSPFOG00000011130	usb1	99	50.000	Poecilia_formosa
ENSMOCG00000022647	Usb1	98	49.640	ENSPLAG00000009820	usb1	99	49.640	Poecilia_latipinna
ENSMOCG00000022647	Usb1	98	50.000	ENSPMEG00000006402	usb1	99	50.000	Poecilia_mexicana
ENSMOCG00000022647	Usb1	85	51.653	ENSPREG00000001047	usb1	98	51.653	Poecilia_reticulata
ENSMOCG00000022647	Usb1	95	79.528	ENSPPYG00000007401	USB1	100	79.528	Pongo_abelii
ENSMOCG00000022647	Usb1	100	84.644	ENSPCOG00000022612	USB1	100	84.644	Propithecus_coquereli
ENSMOCG00000022647	Usb1	100	76.404	ENSPVAG00000004613	USB1	100	76.404	Pteropus_vampyrus
ENSMOCG00000022647	Usb1	85	55.066	ENSPNYG00000022262	usb1	99	51.613	Pundamilia_nyererei
ENSMOCG00000022647	Usb1	84	53.125	ENSPNAG00000011736	usb1	99	46.075	Pygocentrus_nattereri
ENSMOCG00000022647	Usb1	100	89.139	ENSRNOG00000013216	Usb1	100	89.139	Rattus_norvegicus
ENSMOCG00000022647	Usb1	100	76.404	ENSRBIG00000044466	USB1	100	88.318	Rhinopithecus_bieti
ENSMOCG00000022647	Usb1	100	83.146	ENSRROG00000029211	USB1	100	84.328	Rhinopithecus_roxellana
ENSMOCG00000022647	Usb1	100	83.521	ENSSBOG00000029362	USB1	100	83.521	Saimiri_boliviensis_boliviensis
ENSMOCG00000022647	Usb1	82	71.233	ENSSHAG00000006993	USB1	100	66.797	Sarcophilus_harrisii
ENSMOCG00000022647	Usb1	87	56.710	ENSSFOG00015023663	usb1	91	50.000	Scleropages_formosus
ENSMOCG00000022647	Usb1	98	48.299	ENSSMAG00000015834	usb1	99	48.299	Scophthalmus_maximus
ENSMOCG00000022647	Usb1	84	55.357	ENSSDUG00000002949	usb1	99	50.365	Seriola_dumerili
ENSMOCG00000022647	Usb1	84	55.357	ENSSLDG00000014174	usb1	99	49.462	Seriola_lalandi_dorsalis
ENSMOCG00000022647	Usb1	80	66.822	ENSSPUG00000006741	USB1	100	66.822	Sphenodon_punctatus
ENSMOCG00000022647	Usb1	98	46.996	ENSSPAG00000007484	usb1	99	48.763	Stegastes_partitus
ENSMOCG00000022647	Usb1	100	81.041	ENSSSCG00000002807	USB1	100	81.041	Sus_scrofa
ENSMOCG00000022647	Usb1	78	69.856	ENSTGUG00000004792	USB1	99	60.985	Taeniopygia_guttata
ENSMOCG00000022647	Usb1	98	48.327	ENSTRUG00000021069	usb1	99	48.327	Takifugu_rubripes
ENSMOCG00000022647	Usb1	98	46.947	ENSTNIG00000000626	usb1	98	46.947	Tetraodon_nigroviridis
ENSMOCG00000022647	Usb1	87	59.914	ENSTBEG00000001507	USB1	100	59.914	Tupaia_belangeri
ENSMOCG00000022647	Usb1	57	89.167	ENSTTRG00000008429	-	57	89.167	Tursiops_truncatus
ENSMOCG00000022647	Usb1	100	81.413	ENSUAMG00000016823	USB1	100	81.784	Ursus_americanus
ENSMOCG00000022647	Usb1	80	85.047	ENSUMAG00000021369	USB1	100	85.047	Ursus_maritimus
ENSMOCG00000022647	Usb1	77	56.098	ENSVPAG00000009834	-	100	56.098	Vicugna_pacos
ENSMOCG00000022647	Usb1	99	80.224	ENSVVUG00000023700	USB1	93	80.498	Vulpes_vulpes
ENSMOCG00000022647	Usb1	81	57.798	ENSXETG00000013795	usb1	99	54.373	Xenopus_tropicalis
ENSMOCG00000022647	Usb1	85	54.825	ENSXMAG00000024687	usb1	80	51.837	Xiphophorus_maculatus