EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMOCG00000022758 (Gene tree)
Gene ID: 102002291
Gene Symbol: Cpsf1
Alias: -
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Microtus_ochrogaster
Status: putative
Strand: Minus strand
Length: 9976 bases
Position: chr15:11259267-11269242
Accession: 102002291
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMOCP00000027187	CPSF_A	PF03178.15	1.1e-92	1	1
ENSMOCP00000027186	CPSF_A	PF03178.15	2.1e-92	1	1
ENSMOCP00000027185	CPSF_A	PF03178.15	2.1e-92	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMOCT00000031089	-	4287	-	ENSMOCP00000027186	1428 (aa)	-	-
ENSMOCT00000031088	-	4474	XM_005354117	ENSMOCP00000027185	1441 (aa)	XP_005354174	UPI00038BBB1A
ENSMOCT00000031090	-	4263	-	ENSMOCP00000027187	1420 (aa)	-	-

Gene Model

Click here to download ENSMOCG00000022758's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000022758's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMOCG00000022758	Cpsf1	100	96.396	ENSG00000071894	CPSF1	100	96.396	Homo_sapiens
ENSMOCG00000022758	Cpsf1	100	77.485	ENSAPOG00000019621	cpsf1	100	77.688	Acanthochromis_polyacanthus
ENSMOCG00000022758	Cpsf1	97	94.425	ENSAMEG00000005557	CPSF1	100	94.425	Ailuropoda_melanoleuca
ENSMOCG00000022758	Cpsf1	100	78.116	ENSACIG00000006112	cpsf1	100	78.463	Amphilophus_citrinellus
ENSMOCG00000022758	Cpsf1	100	78.994	ENSAOCG00000007120	cpsf1	100	79.201	Amphiprion_ocellaris
ENSMOCG00000022758	Cpsf1	100	79.462	ENSAPEG00000005755	cpsf1	100	79.766	Amphiprion_percula
ENSMOCG00000022758	Cpsf1	100	77.530	ENSATEG00000011097	cpsf1	100	77.868	Anabas_testudineus
ENSMOCG00000022758	Cpsf1	93	81.534	ENSACAG00000009655	CPSF1	100	81.534	Anolis_carolinensis
ENSMOCG00000022758	Cpsf1	100	96.463	ENSANAG00000036514	CPSF1	100	96.463	Aotus_nancymaae
ENSMOCG00000022758	Cpsf1	100	77.216	ENSACLG00000012231	cpsf1	100	77.355	Astatotilapia_calliptera
ENSMOCG00000022758	Cpsf1	100	73.946	ENSAMXG00000008485	cpsf1	100	73.048	Astyanax_mexicanus
ENSMOCG00000022758	Cpsf1	100	94.146	ENSBTAG00000008355	CPSF1	100	94.524	Bos_taurus
ENSMOCG00000022758	Cpsf1	100	32.218	WBGene00022301	cpsf-1	100	39.888	Caenorhabditis_elegans
ENSMOCG00000022758	Cpsf1	100	96.394	ENSCJAG00000021421	CPSF1	100	96.394	Callithrix_jacchus
ENSMOCG00000022758	Cpsf1	97	95.923	ENSCAFG00000001600	CPSF1	100	96.206	Canis_familiaris
ENSMOCG00000022758	Cpsf1	100	96.122	ENSCAFG00020020821	CPSF1	100	96.122	Canis_lupus_dingo
ENSMOCG00000022758	Cpsf1	100	90.569	ENSCHIG00000015833	CPSF1	100	90.569	Capra_hircus
ENSMOCG00000022758	Cpsf1	100	96.879	ENSTSYG00000028560	CPSF1	100	96.879	Carlito_syrichta
ENSMOCG00000022758	Cpsf1	97	96.126	ENSCAPG00000014921	CPSF1	99	96.126	Cavia_aperea
ENSMOCG00000022758	Cpsf1	100	95.770	ENSCPOG00000011448	CPSF1	100	95.770	Cavia_porcellus
ENSMOCG00000022758	Cpsf1	100	96.602	ENSCCAG00000037658	CPSF1	100	96.602	Cebus_capucinus
ENSMOCG00000022758	Cpsf1	100	96.394	ENSCATG00000037234	CPSF1	100	96.394	Cercocebus_atys
ENSMOCG00000022758	Cpsf1	100	97.432	ENSCLAG00000012166	CPSF1	100	97.432	Chinchilla_lanigera
ENSMOCG00000022758	Cpsf1	100	96.602	ENSCSAG00000008502	CPSF1	100	96.602	Chlorocebus_sabaeus
ENSMOCG00000022758	Cpsf1	99	87.605	ENSCPBG00000018910	CPSF1	96	87.605	Chrysemys_picta_bellii
ENSMOCG00000022758	Cpsf1	96	48.924	ENSCING00000000514	-	100	48.924	Ciona_intestinalis
ENSMOCG00000022758	Cpsf1	99	48.247	ENSCSAVG00000002293	-	98	49.765	Ciona_savignyi
ENSMOCG00000022758	Cpsf1	99	90.763	ENSCANG00000032760	CPSF1	100	89.815	Colobus_angolensis_palliatus
ENSMOCG00000022758	Cpsf1	100	98.820	ENSCGRG00001016344	Cpsf1	100	98.820	Cricetulus_griseus_chok1gshd
ENSMOCG00000022758	Cpsf1	100	96.322	ENSCGRG00000003118	Cpsf1	100	96.322	Cricetulus_griseus_crigri
ENSMOCG00000022758	Cpsf1	100	77.547	ENSCSEG00000013464	cpsf1	100	77.755	Cynoglossus_semilaevis
ENSMOCG00000022758	Cpsf1	85	76.781	ENSCVAG00000014059	cpsf1	100	75.926	Cyprinodon_variegatus
ENSMOCG00000022758	Cpsf1	100	79.256	ENSDARG00000034178	cpsf1	100	79.462	Danio_rerio
ENSMOCG00000022758	Cpsf1	68	96.522	ENSDNOG00000043654	CPSF1	94	96.522	Dasypus_novemcinctus
ENSMOCG00000022758	Cpsf1	97	96.772	ENSDORG00000006278	Cpsf1	99	96.772	Dipodomys_ordii
ENSMOCG00000022758	Cpsf1	100	44.929	FBgn0024698	Cpsf160	100	44.916	Drosophila_melanogaster
ENSMOCG00000022758	Cpsf1	80	98.658	ENSETEG00000006022	CPSF1	83	98.658	Echinops_telfairi
ENSMOCG00000022758	Cpsf1	100	96.676	ENSEASG00005010774	CPSF1	100	96.676	Equus_asinus_asinus
ENSMOCG00000022758	Cpsf1	100	96.745	ENSECAG00000022209	CPSF1	100	96.745	Equus_caballus
ENSMOCG00000022758	Cpsf1	100	94.740	ENSEEUG00000000471	CPSF1	100	94.740	Erinaceus_europaeus
ENSMOCG00000022758	Cpsf1	100	77.793	ENSELUG00000012271	cpsf1	100	78.204	Esox_lucius
ENSMOCG00000022758	Cpsf1	100	97.224	ENSFDAG00000016060	CPSF1	100	97.224	Fukomys_damarensis
ENSMOCG00000022758	Cpsf1	100	76.981	ENSFHEG00000016801	cpsf1	100	77.050	Fundulus_heteroclitus
ENSMOCG00000022758	Cpsf1	100	78.000	ENSGMOG00000000796	cpsf1	100	78.207	Gadus_morhua
ENSMOCG00000022758	Cpsf1	95	85.714	ENSGAFG00000018890	cpsf1	100	85.714	Gambusia_affinis
ENSMOCG00000022758	Cpsf1	100	78.552	ENSGACG00000008703	cpsf1	100	78.473	Gasterosteus_aculeatus
ENSMOCG00000022758	Cpsf1	100	83.945	ENSGAGG00000004276	CPSF1	98	87.657	Gopherus_agassizii
ENSMOCG00000022758	Cpsf1	100	96.461	ENSGGOG00000016185	CPSF1	100	96.461	Gorilla_gorilla
ENSMOCG00000022758	Cpsf1	100	79.363	ENSHBUG00000018900	cpsf1	100	79.501	Haplochromis_burtoni
ENSMOCG00000022758	Cpsf1	100	97.363	ENSHGLG00000016139	CPSF1	100	97.363	Heterocephalus_glaber_female
ENSMOCG00000022758	Cpsf1	100	97.294	ENSHGLG00100009750	CPSF1	100	97.294	Heterocephalus_glaber_male
ENSMOCG00000022758	Cpsf1	100	76.934	ENSHCOG00000018509	cpsf1	100	76.850	Hippocampus_comes
ENSMOCG00000022758	Cpsf1	100	76.272	ENSIPUG00000011259	cpsf1	100	76.272	Ictalurus_punctatus
ENSMOCG00000022758	Cpsf1	97	96.569	ENSSTOG00000009957	CPSF1	99	96.569	Ictidomys_tridecemlineatus
ENSMOCG00000022758	Cpsf1	100	97.571	ENSJJAG00000023002	Cpsf1	100	97.571	Jaculus_jaculus
ENSMOCG00000022758	Cpsf1	91	85.893	ENSKMAG00000001940	cpsf1	99	85.893	Kryptolebias_marmoratus
ENSMOCG00000022758	Cpsf1	100	77.024	ENSLBEG00000003601	cpsf1	100	77.464	Labrus_bergylta
ENSMOCG00000022758	Cpsf1	89	81.851	ENSLACG00000000233	CPSF1	92	81.851	Latimeria_chalumnae
ENSMOCG00000022758	Cpsf1	100	78.384	ENSLOCG00000008484	cpsf1	100	78.591	Lepisosteus_oculatus
ENSMOCG00000022758	Cpsf1	97	94.989	ENSLAFG00000022601	CPSF1	100	94.989	Loxodonta_africana
ENSMOCG00000022758	Cpsf1	100	96.394	ENSMFAG00000037013	CPSF1	100	96.394	Macaca_fascicularis
ENSMOCG00000022758	Cpsf1	100	96.463	ENSMMUG00000007380	CPSF1	100	96.463	Macaca_mulatta
ENSMOCG00000022758	Cpsf1	97	96.413	ENSMNEG00000043564	CPSF1	100	96.413	Macaca_nemestrina
ENSMOCG00000022758	Cpsf1	100	96.394	ENSMLEG00000043010	CPSF1	100	96.394	Mandrillus_leucophaeus
ENSMOCG00000022758	Cpsf1	100	78.093	ENSMAMG00000003803	cpsf1	100	78.296	Mastacembelus_armatus
ENSMOCG00000022758	Cpsf1	100	77.285	ENSMZEG00005001168	cpsf1	100	77.424	Maylandia_zebra
ENSMOCG00000022758	Cpsf1	100	98.543	ENSMAUG00000003601	Cpsf1	100	98.543	Mesocricetus_auratus
ENSMOCG00000022758	Cpsf1	100	96.947	ENSMICG00000015767	CPSF1	100	96.947	Microcebus_murinus
ENSMOCG00000022758	Cpsf1	100	78.962	ENSMMOG00000021245	cpsf1	100	79.100	Mola_mola
ENSMOCG00000022758	Cpsf1	100	92.754	ENSMODG00000010755	CPSF1	100	92.754	Monodelphis_domestica
ENSMOCG00000022758	Cpsf1	100	77.116	ENSMALG00000020545	cpsf1	100	77.319	Monopterus_albus
ENSMOCG00000022758	Cpsf1	100	98.820	MGP_CAROLIEiJ_G0019936	Cpsf1	100	98.820	Mus_caroli
ENSMOCG00000022758	Cpsf1	100	98.681	ENSMUSG00000034022	Cpsf1	100	98.681	Mus_musculus
ENSMOCG00000022758	Cpsf1	100	98.751	MGP_PahariEiJ_G0019946	Cpsf1	100	98.751	Mus_pahari
ENSMOCG00000022758	Cpsf1	100	98.751	MGP_SPRETEiJ_G0020839	Cpsf1	100	98.751	Mus_spretus
ENSMOCG00000022758	Cpsf1	94	95.552	ENSMPUG00000006419	CPSF1	93	95.552	Mustela_putorius_furo
ENSMOCG00000022758	Cpsf1	100	97.918	ENSNGAG00000022460	Cpsf1	100	97.918	Nannospalax_galili
ENSMOCG00000022758	Cpsf1	100	74.740	ENSNBRG00000000813	cpsf1	100	74.740	Neolamprologus_brichardi
ENSMOCG00000022758	Cpsf1	86	85.075	ENSNLEG00000010633	-	100	89.352	Nomascus_leucogenys
ENSMOCG00000022758	Cpsf1	82	97.674	ENSMEUG00000014922	CPSF1	85	97.674	Notamacropus_eugenii
ENSMOCG00000022758	Cpsf1	61	96.939	ENSOPRG00000004693	-	71	96.939	Ochotona_princeps
ENSMOCG00000022758	Cpsf1	100	97.502	ENSODEG00000013995	CPSF1	100	97.502	Octodon_degus
ENSMOCG00000022758	Cpsf1	100	79.709	ENSONIG00000007676	cpsf1	100	79.848	Oreochromis_niloticus
ENSMOCG00000022758	Cpsf1	58	92.857	ENSOANG00000010716	CPSF1	88	92.857	Ornithorhynchus_anatinus
ENSMOCG00000022758	Cpsf1	100	77.362	ENSORLG00000013544	cpsf1	92	86.831	Oryzias_latipes
ENSMOCG00000022758	Cpsf1	100	77.430	ENSORLG00020021693	cpsf1	92	86.831	Oryzias_latipes_hni
ENSMOCG00000022758	Cpsf1	100	77.347	ENSORLG00015009979	cpsf1	100	77.415	Oryzias_latipes_hsok
ENSMOCG00000022758	Cpsf1	100	77.520	ENSOMEG00000011849	cpsf1	100	77.725	Oryzias_melastigma
ENSMOCG00000022758	Cpsf1	100	96.810	ENSOGAG00000000315	CPSF1	100	96.810	Otolemur_garnettii
ENSMOCG00000022758	Cpsf1	100	96.463	ENSPPAG00000019280	CPSF1	100	96.463	Pan_paniscus
ENSMOCG00000022758	Cpsf1	100	94.819	ENSPTRG00000051253	-	100	94.819	Pan_troglodytes
ENSMOCG00000022758	Cpsf1	100	96.463	ENSPTRG00000049288	-	100	96.463	Pan_troglodytes
ENSMOCG00000022758	Cpsf1	97	96.270	ENSPANG00000015005	CPSF1	100	96.270	Papio_anubis
ENSMOCG00000022758	Cpsf1	100	80.415	ENSPKIG00000002582	cpsf1	100	80.880	Paramormyrops_kingsleyae
ENSMOCG00000022758	Cpsf1	100	92.685	ENSPCIG00000009035	CPSF1	100	92.685	Phascolarctos_cinereus
ENSMOCG00000022758	Cpsf1	100	76.574	ENSPFOG00000012870	cpsf1	100	76.574	Poecilia_formosa
ENSMOCG00000022758	Cpsf1	100	76.387	ENSPREG00000016307	cpsf1	100	76.455	Poecilia_reticulata
ENSMOCG00000022758	Cpsf1	100	88.558	ENSPPYG00000018973	CPSF1	100	88.558	Pongo_abelii
ENSMOCG00000022758	Cpsf1	91	95.455	ENSPCAG00000011541	CPSF1	94	95.455	Procavia_capensis
ENSMOCG00000022758	Cpsf1	100	92.996	ENSPCOG00000020001	CPSF1	100	92.996	Propithecus_coquereli
ENSMOCG00000022758	Cpsf1	91	99.429	ENSPVAG00000006761	CPSF1	91	99.429	Pteropus_vampyrus
ENSMOCG00000022758	Cpsf1	100	78.332	ENSPNYG00000004906	cpsf1	100	78.469	Pundamilia_nyererei
ENSMOCG00000022758	Cpsf1	100	75.086	ENSPNAG00000024395	cpsf1	100	75.086	Pygocentrus_nattereri
ENSMOCG00000022758	Cpsf1	100	98.959	ENSRNOG00000030705	Cpsf1	100	98.959	Rattus_norvegicus
ENSMOCG00000022758	Cpsf1	100	96.463	ENSRBIG00000044907	CPSF1	100	96.463	Rhinopithecus_bieti
ENSMOCG00000022758	Cpsf1	100	96.394	ENSRROG00000044861	CPSF1	100	96.394	Rhinopithecus_roxellana
ENSMOCG00000022758	Cpsf1	97	96.341	ENSSBOG00000027177	CPSF1	100	96.341	Saimiri_boliviensis_boliviensis
ENSMOCG00000022758	Cpsf1	100	92.685	ENSSHAG00000006500	CPSF1	100	92.685	Sarcophilus_harrisii
ENSMOCG00000022758	Cpsf1	100	77.854	ENSSFOG00015004606	cpsf1	100	81.118	Scleropages_formosus
ENSMOCG00000022758	Cpsf1	100	77.522	ENSSMAG00000020547	cpsf1	100	77.793	Scophthalmus_maximus
ENSMOCG00000022758	Cpsf1	100	78.907	ENSSDUG00000001100	cpsf1	100	79.253	Seriola_dumerili
ENSMOCG00000022758	Cpsf1	100	79.239	ENSSLDG00000003619	cpsf1	100	79.308	Seriola_lalandi_dorsalis
ENSMOCG00000022758	Cpsf1	89	100.000	ENSSARG00000003643	CPSF1	92	100.000	Sorex_araneus
ENSMOCG00000022758	Cpsf1	96	87.527	ENSSPUG00000014396	CPSF1	100	87.527	Sphenodon_punctatus
ENSMOCG00000022758	Cpsf1	100	77.605	ENSSPAG00000005349	cpsf1	100	77.808	Stegastes_partitus
ENSMOCG00000022758	Cpsf1	100	95.429	ENSSSCG00000005906	CPSF1	100	95.429	Sus_scrofa
ENSMOCG00000022758	Cpsf1	96	77.747	ENSTRUG00000013134	cpsf1	99	77.910	Takifugu_rubripes
ENSMOCG00000022758	Cpsf1	100	78.351	ENSTNIG00000014027	cpsf1	100	78.419	Tetraodon_nigroviridis
ENSMOCG00000022758	Cpsf1	77	88.621	ENSTBEG00000001756	CPSF1	91	88.621	Tupaia_belangeri
ENSMOCG00000022758	Cpsf1	90	97.064	ENSTTRG00000001937	CPSF1	90	97.064	Tursiops_truncatus
ENSMOCG00000022758	Cpsf1	97	96.352	ENSUAMG00000006476	CPSF1	98	96.352	Ursus_americanus
ENSMOCG00000022758	Cpsf1	100	77.578	ENSXCOG00000003608	cpsf1	100	77.785	Xiphophorus_couchianus
ENSMOCG00000022758	Cpsf1	100	77.125	ENSXMAG00000005798	cpsf1	100	77.332	Xiphophorus_maculatus