EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMODG00000001236 (Gene tree)
Gene ID: 100024904
Gene Symbol: SAFB
Alias: HET|SAFB1
Full Name: scaffold attachment factor B
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Plus strand
Length: 36200 bases
Position: chr3:443046366-443082565
Accession: 10520
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000001484	RRM_5	PF13893.6	2.5e-06	1	1
ENSMODP00000001484	RRM_1	PF00076.22	3.3e-13	1	1
ENSMODP00000001484	SAP	PF02037.27	2.3e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000001516	SAFB-201	2802	-	ENSMODP00000001484	933 (aa)	-	F7FX32

Gene Model

Click here to download ENSMODG00000001236's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000001236's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMODG00000001236	SAFB	98	76.981	ENSMODG00000001178	SAFB2	100	76.545

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000001236	SAFB	98	76.118	ENSG00000160633	SAFB	100	75.558	Homo_sapiens
ENSMODG00000001236	SAFB	90	45.734	ENSAPOG00000022508	safb	98	44.287	Acanthochromis_polyacanthus
ENSMODG00000001236	SAFB	100	74.043	ENSAMEG00000012254	SAFB	100	73.617	Ailuropoda_melanoleuca
ENSMODG00000001236	SAFB	94	39.956	ENSACIG00000006247	safb	94	42.825	Amphilophus_citrinellus
ENSMODG00000001236	SAFB	91	44.240	ENSAOCG00000006308	safb	98	44.027	Amphiprion_ocellaris
ENSMODG00000001236	SAFB	90	45.114	ENSAPEG00000023342	safb	98	43.804	Amphiprion_percula
ENSMODG00000001236	SAFB	95	41.416	ENSATEG00000004998	safb	94	43.840	Anabas_testudineus
ENSMODG00000001236	SAFB	90	64.202	ENSAPLG00000006355	-	100	65.258	Anas_platyrhynchos
ENSMODG00000001236	SAFB	78	49.668	ENSACAG00000016893	-	96	51.921	Anolis_carolinensis
ENSMODG00000001236	SAFB	98	76.118	ENSANAG00000028821	SAFB	100	75.877	Aotus_nancymaae
ENSMODG00000001236	SAFB	95	40.632	ENSACLG00000001926	safb	94	42.921	Astatotilapia_calliptera
ENSMODG00000001236	SAFB	92	44.710	ENSAMXG00000018154	safb	95	43.833	Astyanax_mexicanus
ENSMODG00000001236	SAFB	98	72.628	ENSBTAG00000007875	SAFB	100	72.476	Bos_taurus
ENSMODG00000001236	SAFB	88	79.581	ENSCJAG00000017081	SAFB	100	77.778	Callithrix_jacchus
ENSMODG00000001236	SAFB	98	75.873	ENSCAFG00000018803	SAFB	87	75.426	Canis_familiaris
ENSMODG00000001236	SAFB	98	75.873	ENSCAFG00020018943	SAFB	100	75.186	Canis_lupus_dingo
ENSMODG00000001236	SAFB	98	72.410	ENSCHIG00000007262	SAFB	98	76.744	Capra_hircus
ENSMODG00000001236	SAFB	59	66.306	ENSTSYG00000001851	-	100	62.655	Carlito_syrichta
ENSMODG00000001236	SAFB	100	70.301	ENSCPOG00000026322	SAFB	100	70.717	Cavia_porcellus
ENSMODG00000001236	SAFB	98	76.144	ENSCCAG00000020193	SAFB	100	75.584	Cebus_capucinus
ENSMODG00000001236	SAFB	98	76.009	ENSCATG00000029994	SAFB	100	75.000	Cercocebus_atys
ENSMODG00000001236	SAFB	100	70.324	ENSCLAG00000007734	SAFB	100	71.055	Chinchilla_lanigera
ENSMODG00000001236	SAFB	98	76.118	ENSCSAG00000009949	SAFB	100	75.000	Chlorocebus_sabaeus
ENSMODG00000001236	SAFB	82	66.710	ENSCHOG00000003208	SAFB	89	66.452	Choloepus_hoffmanni
ENSMODG00000001236	SAFB	92	64.111	ENSCPBG00000010936	-	100	63.111	Chrysemys_picta_bellii
ENSMODG00000001236	SAFB	92	66.935	ENSCPBG00000010928	-	100	66.705	Chrysemys_picta_bellii
ENSMODG00000001236	SAFB	87	75.980	ENSCANG00000004774	-	100	75.980	Colobus_angolensis_palliatus
ENSMODG00000001236	SAFB	98	70.883	ENSCANG00000019754	-	100	69.542	Colobus_angolensis_palliatus
ENSMODG00000001236	SAFB	98	69.797	ENSCGRG00001002254	Safb	100	69.199	Cricetulus_griseus_chok1gshd
ENSMODG00000001236	SAFB	92	65.862	ENSCGRG00000011529	Safb	98	65.642	Cricetulus_griseus_crigri
ENSMODG00000001236	SAFB	94	41.375	ENSCSEG00000019870	safb	67	39.905	Cynoglossus_semilaevis
ENSMODG00000001236	SAFB	93	40.289	ENSCVAG00000002226	safb	93	40.045	Cyprinodon_variegatus
ENSMODG00000001236	SAFB	90	42.664	ENSDARG00000020467	safb	94	43.886	Danio_rerio
ENSMODG00000001236	SAFB	98	74.946	ENSDNOG00000015746	SAFB	95	74.852	Dasypus_novemcinctus
ENSMODG00000001236	SAFB	68	68.397	ENSDORG00000016200	Safb	100	65.456	Dipodomys_ordii
ENSMODG00000001236	SAFB	80	69.718	ENSETEG00000018679	SAFB	83	69.014	Echinops_telfairi
ENSMODG00000001236	SAFB	98	72.017	ENSEASG00005023019	SAFB	100	72.516	Equus_asinus_asinus
ENSMODG00000001236	SAFB	98	74.236	ENSECAG00000018659	SAFB	89	73.511	Equus_caballus
ENSMODG00000001236	SAFB	95	41.866	ENSELUG00000022327	safb	99	44.111	Esox_lucius
ENSMODG00000001236	SAFB	98	75.791	ENSFCAG00000011835	SAFB	100	75.239	Felis_catus
ENSMODG00000001236	SAFB	91	60.674	ENSFALG00000013881	-	99	61.305	Ficedula_albicollis
ENSMODG00000001236	SAFB	100	66.631	ENSFALG00000013882	-	92	65.675	Ficedula_albicollis
ENSMODG00000001236	SAFB	92	68.101	ENSFDAG00000020306	SAFB	100	70.472	Fukomys_damarensis
ENSMODG00000001236	SAFB	74	55.372	ENSFHEG00000004219	safb	94	40.670	Fundulus_heteroclitus
ENSMODG00000001236	SAFB	95	41.405	ENSGMOG00000014280	safb	94	41.333	Gadus_morhua
ENSMODG00000001236	SAFB	100	66.348	ENSGALG00000013365	-	100	65.282	Gallus_gallus
ENSMODG00000001236	SAFB	100	62.602	ENSGALG00000001948	-	100	63.272	Gallus_gallus
ENSMODG00000001236	SAFB	93	38.530	ENSGAFG00000016162	safb	94	39.978	Gambusia_affinis
ENSMODG00000001236	SAFB	95	42.389	ENSGACG00000011385	safb	94	42.186	Gasterosteus_aculeatus
ENSMODG00000001236	SAFB	95	65.059	ENSGAGG00000008424	-	100	64.416	Gopherus_agassizii
ENSMODG00000001236	SAFB	73	62.665	ENSGAGG00000017702	-	100	61.786	Gopherus_agassizii
ENSMODG00000001236	SAFB	98	76.009	ENSGGOG00000015109	SAFB	100	74.894	Gorilla_gorilla
ENSMODG00000001236	SAFB	95	38.749	ENSHBUG00000009218	safb	70	40.221	Haplochromis_burtoni
ENSMODG00000001236	SAFB	100	72.851	ENSHGLG00000015883	SAFB	100	72.851	Heterocephalus_glaber_female
ENSMODG00000001236	SAFB	92	35.982	ENSHCOG00000001705	safb	96	38.603	Hippocampus_comes
ENSMODG00000001236	SAFB	95	43.388	ENSIPUG00000024869	safb2	95	46.623	Ictalurus_punctatus
ENSMODG00000001236	SAFB	93	73.176	ENSSTOG00000002783	SAFB	100	73.176	Ictidomys_tridecemlineatus
ENSMODG00000001236	SAFB	100	70.924	ENSJJAG00000009021	Safb	100	70.924	Jaculus_jaculus
ENSMODG00000001236	SAFB	90	44.037	ENSKMAG00000022308	safb	94	43.695	Kryptolebias_marmoratus
ENSMODG00000001236	SAFB	95	42.206	ENSLBEG00000006015	safb	65	43.899	Labrus_bergylta
ENSMODG00000001236	SAFB	64	52.724	ENSLACG00000018090	SAFB	100	54.346	Latimeria_chalumnae
ENSMODG00000001236	SAFB	95	46.882	ENSLOCG00000003613	safb	99	46.835	Lepisosteus_oculatus
ENSMODG00000001236	SAFB	99	73.617	ENSLAFG00000003840	SAFB	100	73.830	Loxodonta_africana
ENSMODG00000001236	SAFB	98	75.926	ENSMFAG00000003885	SAFB	100	74.920	Macaca_fascicularis
ENSMODG00000001236	SAFB	98	76.009	ENSMMUG00000017970	SAFB	100	75.000	Macaca_mulatta
ENSMODG00000001236	SAFB	98	73.094	ENSMNEG00000035637	SAFB	100	71.838	Macaca_nemestrina
ENSMODG00000001236	SAFB	98	71.336	ENSMLEG00000038637	SAFB	100	70.127	Mandrillus_leucophaeus
ENSMODG00000001236	SAFB	97	40.355	ENSMAMG00000003357	safb	87	42.241	Mastacembelus_armatus
ENSMODG00000001236	SAFB	95	41.094	ENSMZEG00005009120	safb	94	43.578	Maylandia_zebra
ENSMODG00000001236	SAFB	97	63.925	ENSMGAG00000001101	-	100	63.696	Meleagris_gallopavo
ENSMODG00000001236	SAFB	89	60.689	ENSMGAG00000001051	-	100	60.740	Meleagris_gallopavo
ENSMODG00000001236	SAFB	53	76.040	ENSMAUG00000005013	Safb	100	75.644	Mesocricetus_auratus
ENSMODG00000001236	SAFB	100	73.858	ENSMICG00000008739	-	100	74.495	Microcebus_murinus
ENSMODG00000001236	SAFB	85	65.000	ENSMICG00000046795	-	94	85.714	Microcebus_murinus
ENSMODG00000001236	SAFB	98	69.723	ENSMOCG00000014040	Safb	100	68.783	Microtus_ochrogaster
ENSMODG00000001236	SAFB	95	40.749	ENSMALG00000020330	safb	98	42.464	Monopterus_albus
ENSMODG00000001236	SAFB	100	69.263	MGP_CAROLIEiJ_G0021780	Safb	100	68.951	Mus_caroli
ENSMODG00000001236	SAFB	100	69.263	ENSMUSG00000071054	Safb	100	68.951	Mus_musculus
ENSMODG00000001236	SAFB	98	69.468	MGP_PahariEiJ_G0020769	Safb	100	68.465	Mus_pahari
ENSMODG00000001236	SAFB	100	75.239	ENSMPUG00000006123	SAFB	94	75.027	Mustela_putorius_furo
ENSMODG00000001236	SAFB	98	75.027	ENSMLUG00000001081	SAFB	100	74.283	Myotis_lucifugus
ENSMODG00000001236	SAFB	100	66.840	ENSNGAG00000019882	Safb	100	67.256	Nannospalax_galili
ENSMODG00000001236	SAFB	93	76.424	ENSNLEG00000013551	SAFB	100	75.361	Nomascus_leucogenys
ENSMODG00000001236	SAFB	60	66.901	ENSOPRG00000011561	-	100	70.180	Ochotona_princeps
ENSMODG00000001236	SAFB	100	73.069	ENSODEG00000014838	SAFB	100	73.069	Octodon_degus
ENSMODG00000001236	SAFB	95	41.514	ENSONIG00000002318	safb	94	44.027	Oreochromis_niloticus
ENSMODG00000001236	SAFB	90	66.274	ENSOCUG00000014628	SAFB	64	67.463	Oryctolagus_cuniculus
ENSMODG00000001236	SAFB	90	43.584	ENSORLG00000016989	safb	97	42.464	Oryzias_latipes
ENSMODG00000001236	SAFB	94	41.270	ENSORLG00020000404	safb	69	40.665	Oryzias_latipes_hni
ENSMODG00000001236	SAFB	93	43.080	ENSORLG00015010733	safb	94	42.746	Oryzias_latipes_hsok
ENSMODG00000001236	SAFB	95	39.978	ENSOMEG00000009066	safb	94	41.731	Oryzias_melastigma
ENSMODG00000001236	SAFB	100	71.504	ENSOGAG00000027769	SAFB	100	73.757	Otolemur_garnettii
ENSMODG00000001236	SAFB	78	68.299	ENSOARG00000007856	-	100	68.299	Ovis_aries
ENSMODG00000001236	SAFB	98	69.684	ENSOARG00000007662	-	100	68.969	Ovis_aries
ENSMODG00000001236	SAFB	98	75.926	ENSPPAG00000035129	SAFB	100	75.372	Pan_paniscus
ENSMODG00000001236	SAFB	98	75.791	ENSPPRG00000017197	SAFB	100	75.239	Panthera_pardus
ENSMODG00000001236	SAFB	98	75.926	ENSPTRG00000010335	SAFB	100	75.372	Pan_troglodytes
ENSMODG00000001236	SAFB	98	75.817	ENSPANG00000007770	SAFB	100	74.814	Papio_anubis
ENSMODG00000001236	SAFB	97	42.456	ENSPKIG00000009902	safb	97	45.503	Paramormyrops_kingsleyae
ENSMODG00000001236	SAFB	100	65.236	ENSPSIG00000009367	-	100	63.958	Pelodiscus_sinensis
ENSMODG00000001236	SAFB	100	64.743	ENSPSIG00000011679	-	100	65.587	Pelodiscus_sinensis
ENSMODG00000001236	SAFB	98	69.551	ENSPEMG00000020428	Safb	100	68.958	Peromyscus_maniculatus_bairdii
ENSMODG00000001236	SAFB	59	94.918	ENSPCIG00000009504	-	100	94.918	Phascolarctos_cinereus
ENSMODG00000001236	SAFB	89	40.850	ENSPFOG00000007745	safb	93	40.940	Poecilia_formosa
ENSMODG00000001236	SAFB	93	38.462	ENSPLAG00000001614	safb	94	40.535	Poecilia_latipinna
ENSMODG00000001236	SAFB	76	46.341	ENSPMEG00000021023	safb	93	40.716	Poecilia_mexicana
ENSMODG00000001236	SAFB	76	42.997	ENSPREG00000012496	safb	94	41.077	Poecilia_reticulata
ENSMODG00000001236	SAFB	98	75.873	ENSPPYG00000009428	SAFB	100	74.867	Pongo_abelii
ENSMODG00000001236	SAFB	100	69.989	ENSPCAG00000006475	SAFB	100	70.732	Procavia_capensis
ENSMODG00000001236	SAFB	100	70.551	ENSPCOG00000014090	SAFB	100	70.021	Propithecus_coquereli
ENSMODG00000001236	SAFB	98	69.466	ENSPVAG00000004913	SAFB	100	69.607	Pteropus_vampyrus
ENSMODG00000001236	SAFB	93	42.746	ENSPNAG00000021838	safb	97	44.896	Pygocentrus_nattereri
ENSMODG00000001236	SAFB	100	68.394	ENSRNOG00000050543	Safb	100	68.497	Rattus_norvegicus
ENSMODG00000001236	SAFB	98	66.594	ENSRBIG00000042509	SAFB	91	79.381	Rhinopithecus_bieti
ENSMODG00000001236	SAFB	98	75.926	ENSRROG00000029278	SAFB	100	74.920	Rhinopithecus_roxellana
ENSMODG00000001236	SAFB	98	76.227	ENSSBOG00000026291	SAFB	100	75.452	Saimiri_boliviensis_boliviensis
ENSMODG00000001236	SAFB	97	44.917	ENSSFOG00015008156	safb	97	47.720	Scleropages_formosus
ENSMODG00000001236	SAFB	95	40.885	ENSSMAG00000009316	safb	98	42.375	Scophthalmus_maximus
ENSMODG00000001236	SAFB	95	39.914	ENSSDUG00000009652	safb	94	42.286	Seriola_dumerili
ENSMODG00000001236	SAFB	95	42.721	ENSSLDG00000001670	safb	94	43.077	Seriola_lalandi_dorsalis
ENSMODG00000001236	SAFB	93	70.011	ENSSARG00000010475	SAFB	100	69.635	Sorex_araneus
ENSMODG00000001236	SAFB	58	60.623	ENSSPUG00000009747	-	99	60.024	Sphenodon_punctatus
ENSMODG00000001236	SAFB	53	62.355	ENSSPUG00000009820	-	99	62.899	Sphenodon_punctatus
ENSMODG00000001236	SAFB	95	41.748	ENSSPAG00000015682	safb	98	40.526	Stegastes_partitus
ENSMODG00000001236	SAFB	100	74.763	ENSSSCG00000013522	SAFB	99	75.784	Sus_scrofa
ENSMODG00000001236	SAFB	97	65.246	ENSTGUG00000000502	-	99	64.967	Taeniopygia_guttata
ENSMODG00000001236	SAFB	93	63.164	ENSTGUG00000000489	-	100	64.746	Taeniopygia_guttata
ENSMODG00000001236	SAFB	90	41.304	ENSTRUG00000003567	safb	94	42.210	Takifugu_rubripes
ENSMODG00000001236	SAFB	88	42.759	ENSTNIG00000015470	safb	100	42.230	Tetraodon_nigroviridis
ENSMODG00000001236	SAFB	59	53.717	ENSTBEG00000013124	-	66	81.061	Tupaia_belangeri
ENSMODG00000001236	SAFB	90	92.308	ENSTTRG00000013588	SAFB	92	82.540	Tursiops_truncatus
ENSMODG00000001236	SAFB	77	74.380	ENSUAMG00000024543	SAFB	100	68.828	Ursus_americanus
ENSMODG00000001236	SAFB	86	72.277	ENSUMAG00000009734	SAFB	97	71.562	Ursus_maritimus
ENSMODG00000001236	SAFB	72	77.557	ENSVPAG00000012043	SAFB	77	76.991	Vicugna_pacos
ENSMODG00000001236	SAFB	98	75.791	ENSVVUG00000013720	SAFB	87	75.345	Vulpes_vulpes
ENSMODG00000001236	SAFB	65	50.412	ENSXETG00000008755	safb	98	51.536	Xenopus_tropicalis
ENSMODG00000001236	SAFB	83	42.946	ENSXMAG00000003458	safb	93	40.089	Xiphophorus_maculatus