EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMODG00000001350 (Gene tree)
Gene ID: 100016159
Gene Symbol: -
Alias: -
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Minus strand
Length: 35353 bases
Position: chr6:83613041-83648393
Accession: 100016159
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000001628	PPR	PF01535.20	5.5e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000001662	-	3871	-	ENSMODP00000001628	737 (aa)	XP_007498509	F7FW99

Gene Model

Click here to download ENSMODG00000001350's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000001350's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000001350	-	99	58.436	ENSG00000248919	ATP5MF-PTCD1	92	58.436	Homo_sapiens
ENSMODG00000001350	-	99	58.436	ENSG00000106246	PTCD1	98	58.436	Homo_sapiens
ENSMODG00000001350	-	80	44.728	ENSAPOG00000010679	ptcd1	88	44.728	Acanthochromis_polyacanthus
ENSMODG00000001350	-	99	59.864	ENSAMEG00000006224	-	92	59.864	Ailuropoda_melanoleuca
ENSMODG00000001350	-	83	46.688	ENSACIG00000017861	ptcd1	86	46.688	Amphilophus_citrinellus
ENSMODG00000001350	-	81	47.508	ENSAOCG00000020741	-	81	47.508	Amphiprion_ocellaris
ENSMODG00000001350	-	78	46.609	ENSAOCG00000022617	ptcd1	82	46.609	Amphiprion_ocellaris
ENSMODG00000001350	-	81	46.689	ENSAPEG00000022632	ptcd1	81	46.689	Amphiprion_percula
ENSMODG00000001350	-	86	47.087	ENSATEG00000007016	ptcd1	84	47.087	Anabas_testudineus
ENSMODG00000001350	-	85	59.271	ENSAPLG00000006862	-	99	58.065	Anas_platyrhynchos
ENSMODG00000001350	-	90	55.539	ENSACAG00000012871	-	86	55.539	Anolis_carolinensis
ENSMODG00000001350	-	98	58.069	ENSANAG00000035790	-	99	58.425	Aotus_nancymaae
ENSMODG00000001350	-	85	46.069	ENSACLG00000002824	ptcd1	84	46.069	Astatotilapia_calliptera
ENSMODG00000001350	-	83	49.369	ENSAMXG00000037292	ptcd1	87	49.369	Astyanax_mexicanus
ENSMODG00000001350	-	99	59.239	ENSBTAG00000020440	-	86	59.647	Bos_taurus
ENSMODG00000001350	-	99	58.152	ENSCJAG00000015815	-	99	58.152	Callithrix_jacchus
ENSMODG00000001350	-	99	61.560	ENSCAFG00000015055	-	92	60.952	Canis_familiaris
ENSMODG00000001350	-	99	61.560	ENSCAFG00020014480	-	92	61.560	Canis_lupus_dingo
ENSMODG00000001350	-	93	62.193	ENSCHIG00000027000	-	95	62.338	Capra_hircus
ENSMODG00000001350	-	98	59.128	ENSTSYG00000029495	-	98	60.000	Carlito_syrichta
ENSMODG00000001350	-	89	62.784	ENSCAPG00000014660	-	98	62.935	Cavia_aperea
ENSMODG00000001350	-	98	60.000	ENSCPOG00000001780	-	97	60.138	Cavia_porcellus
ENSMODG00000001350	-	99	57.880	ENSCCAG00000034025	-	99	57.880	Cebus_capucinus
ENSMODG00000001350	-	99	58.356	ENSCATG00000040859	-	98	58.436	Cercocebus_atys
ENSMODG00000001350	-	98	59.862	ENSCLAG00000006354	-	99	59.647	Chinchilla_lanigera
ENSMODG00000001350	-	92	58.050	ENSCSAG00000017794	-	95	58.050	Chlorocebus_sabaeus
ENSMODG00000001350	-	99	57.353	ENSCPBG00000020866	-	100	57.353	Chrysemys_picta_bellii
ENSMODG00000001350	-	81	30.629	ENSCING00000007717	-	98	30.795	Ciona_intestinalis
ENSMODG00000001350	-	99	57.888	ENSCANG00000023441	-	98	57.888	Colobus_angolensis_palliatus
ENSMODG00000001350	-	98	59.254	ENSCGRG00001023686	Ptcd1	97	59.254	Cricetulus_griseus_chok1gshd
ENSMODG00000001350	-	98	59.778	ENSCGRG00000015031	Ptcd1	98	59.778	Cricetulus_griseus_crigri
ENSMODG00000001350	-	84	45.039	ENSCSEG00000002378	ptcd1	84	45.268	Cynoglossus_semilaevis
ENSMODG00000001350	-	83	46.254	ENSCVAG00000003621	ptcd1	88	46.254	Cyprinodon_variegatus
ENSMODG00000001350	-	85	46.105	ENSCVAG00000015826	ptcd1	85	46.105	Cyprinodon_variegatus
ENSMODG00000001350	-	84	48.320	ENSDARG00000076176	ptcd1	88	48.320	Danio_rerio
ENSMODG00000001350	-	99	58.570	ENSDNOG00000009957	-	99	58.546	Dasypus_novemcinctus
ENSMODG00000001350	-	99	56.716	ENSDORG00000000740	Ptcd1	99	56.988	Dipodomys_ordii
ENSMODG00000001350	-	89	39.416	ENSEBUG00000014515	ptcd1	99	41.681	Eptatretus_burgeri
ENSMODG00000001350	-	98	60.274	ENSEASG00005002480	-	97	60.685	Equus_asinus_asinus
ENSMODG00000001350	-	98	60.685	ENSECAG00000016617	-	97	61.096	Equus_caballus
ENSMODG00000001350	-	82	45.907	ENSELUG00000016517	ptcd1	83	45.907	Esox_lucius
ENSMODG00000001350	-	99	61.141	ENSFCAG00000015069	-	99	61.005	Felis_catus
ENSMODG00000001350	-	85	59.365	ENSFALG00000013803	-	93	56.869	Ficedula_albicollis
ENSMODG00000001350	-	99	59.184	ENSFDAG00000006393	-	99	59.456	Fukomys_damarensis
ENSMODG00000001350	-	78	44.310	ENSFHEG00000012491	ptcd1	94	44.310	Fundulus_heteroclitus
ENSMODG00000001350	-	80	46.555	ENSGMOG00000007639	ptcd1	91	46.555	Gadus_morhua
ENSMODG00000001350	-	85	59.494	ENSGALG00000004711	-	89	59.126	Gallus_gallus
ENSMODG00000001350	-	82	46.798	ENSGAFG00000013175	ptcd1	85	45.938	Gambusia_affinis
ENSMODG00000001350	-	86	45.723	ENSGACG00000016607	ptcd1	94	45.879	Gasterosteus_aculeatus
ENSMODG00000001350	-	93	56.710	ENSGAGG00000021832	-	100	56.710	Gopherus_agassizii
ENSMODG00000001350	-	99	58.299	ENSGGOG00000015123	-	98	58.299	Gorilla_gorilla
ENSMODG00000001350	-	85	45.768	ENSHBUG00000018275	ptcd1	84	45.768	Haplochromis_burtoni
ENSMODG00000001350	-	99	59.072	ENSHGLG00000017621	-	99	59.482	Heterocephalus_glaber_female
ENSMODG00000001350	-	99	59.072	ENSHGLG00100007218	-	99	59.482	Heterocephalus_glaber_male
ENSMODG00000001350	-	83	44.084	ENSHCOG00000010784	ptcd1	85	44.588	Hippocampus_comes
ENSMODG00000001350	-	99	57.470	ENSSTOG00000001682	-	99	57.470	Ictidomys_tridecemlineatus
ENSMODG00000001350	-	89	61.422	ENSJJAG00000000319	Ptcd1	92	61.271	Jaculus_jaculus
ENSMODG00000001350	-	83	44.888	ENSKMAG00000008708	ptcd1	83	45.367	Kryptolebias_marmoratus
ENSMODG00000001350	-	87	44.306	ENSLBEG00000008061	ptcd1	86	44.306	Labrus_bergylta
ENSMODG00000001350	-	88	55.436	ENSLACG00000011172	ptcd1	88	55.657	Latimeria_chalumnae
ENSMODG00000001350	-	89	54.709	ENSLOCG00000004833	ptcd1	96	53.292	Lepisosteus_oculatus
ENSMODG00000001350	-	89	61.538	ENSLAFG00000002588	-	99	57.412	Loxodonta_africana
ENSMODG00000001350	-	99	58.299	ENSMFAG00000041324	-	98	58.299	Macaca_fascicularis
ENSMODG00000001350	-	99	58.356	ENSMMUG00000030408	-	98	58.436	Macaca_mulatta
ENSMODG00000001350	-	99	58.299	ENSMNEG00000043786	-	98	58.299	Macaca_nemestrina
ENSMODG00000001350	-	99	42.936	ENSMLEG00000031179	-	98	44.582	Mandrillus_leucophaeus
ENSMODG00000001350	-	86	46.384	ENSMAMG00000007623	ptcd1	84	46.384	Mastacembelus_armatus
ENSMODG00000001350	-	85	45.912	ENSMZEG00005012722	ptcd1	84	45.912	Maylandia_zebra
ENSMODG00000001350	-	91	57.101	ENSMGAG00000004211	-	87	57.101	Meleagris_gallopavo
ENSMODG00000001350	-	84	63.898	ENSMICG00000017428	-	98	58.799	Microcebus_murinus
ENSMODG00000001350	-	85	45.383	ENSMMOG00000020243	ptcd1	88	47.107	Mola_mola
ENSMODG00000001350	-	81	47.049	ENSMALG00000018442	ptcd1	80	47.049	Monopterus_albus
ENSMODG00000001350	-	99	57.844	MGP_CAROLIEiJ_G0028011	Ptcd1	99	57.844	Mus_caroli
ENSMODG00000001350	-	99	57.473	ENSMUSG00000029624	Ptcd1	99	57.923	Mus_musculus
ENSMODG00000001350	-	99	57.880	MGP_PahariEiJ_G0024580	Ptcd1	99	57.880	Mus_pahari
ENSMODG00000001350	-	99	57.588	MGP_SPRETEiJ_G0029012	Ptcd1	99	58.051	Mus_spretus
ENSMODG00000001350	-	99	59.350	ENSMPUG00000016518	-	99	59.892	Mustela_putorius_furo
ENSMODG00000001350	-	99	59.704	ENSMLUG00000010994	-	93	59.973	Myotis_lucifugus
ENSMODG00000001350	-	86	45.683	ENSNBRG00000010079	ptcd1	85	46.677	Neolamprologus_brichardi
ENSMODG00000001350	-	76	63.750	ENSNLEG00000011060	-	92	63.750	Nomascus_leucogenys
ENSMODG00000001350	-	98	77.793	ENSMEUG00000006930	-	99	77.793	Notamacropus_eugenii
ENSMODG00000001350	-	78	66.434	ENSOPRG00000013647	-	82	65.584	Ochotona_princeps
ENSMODG00000001350	-	85	45.126	ENSONIG00000003168	ptcd1	99	45.126	Oreochromis_niloticus
ENSMODG00000001350	-	78	58.579	ENSOANG00000007728	-	85	52.023	Ornithorhynchus_anatinus
ENSMODG00000001350	-	99	57.760	ENSOCUG00000010584	-	98	57.895	Oryctolagus_cuniculus
ENSMODG00000001350	-	85	45.126	ENSORLG00000009275	ptcd1	88	45.126	Oryzias_latipes
ENSMODG00000001350	-	85	45.126	ENSORLG00020000988	ptcd1	89	45.126	Oryzias_latipes_hni
ENSMODG00000001350	-	85	44.811	ENSORLG00015010557	ptcd1	89	44.811	Oryzias_latipes_hsok
ENSMODG00000001350	-	85	45.455	ENSOMEG00000020627	ptcd1	89	45.455	Oryzias_melastigma
ENSMODG00000001350	-	84	64.434	ENSOGAG00000010877	-	93	62.033	Otolemur_garnettii
ENSMODG00000001350	-	99	56.216	ENSOARG00000018676	-	99	56.351	Ovis_aries
ENSMODG00000001350	-	99	58.299	ENSPPAG00000036024	-	98	58.299	Pan_paniscus
ENSMODG00000001350	-	99	61.277	ENSPPRG00000003478	-	99	61.277	Panthera_pardus
ENSMODG00000001350	-	99	58.436	ENSPTRG00000019452	-	98	58.436	Pan_troglodytes
ENSMODG00000001350	-	99	58.082	ENSPANG00000016730	-	98	58.082	Papio_anubis
ENSMODG00000001350	-	91	51.166	ENSPKIG00000014215	ptcd1	95	49.485	Paramormyrops_kingsleyae
ENSMODG00000001350	-	82	58.469	ENSPSIG00000011184	-	100	58.632	Pelodiscus_sinensis
ENSMODG00000001350	-	72	40.000	ENSPMAG00000009667	ptcd1	100	40.000	Petromyzon_marinus
ENSMODG00000001350	-	100	80.000	ENSPCIG00000024778	-	100	80.000	Phascolarctos_cinereus
ENSMODG00000001350	-	82	46.305	ENSPFOG00000004458	ptcd1	87	44.946	Poecilia_formosa
ENSMODG00000001350	-	82	46.305	ENSPLAG00000011051	ptcd1	85	45.455	Poecilia_latipinna
ENSMODG00000001350	-	82	46.470	ENSPMEG00000020547	ptcd1	82	46.470	Poecilia_mexicana
ENSMODG00000001350	-	81	46.423	ENSPREG00000000059	ptcd1	87	45.283	Poecilia_reticulata
ENSMODG00000001350	-	90	62.406	ENSPPYG00000017377	-	98	62.406	Pongo_abelii
ENSMODG00000001350	-	75	74.359	ENSPCAG00000001852	-	84	74.359	Procavia_capensis
ENSMODG00000001350	-	98	59.589	ENSPCOG00000018596	-	98	60.274	Propithecus_coquereli
ENSMODG00000001350	-	57	71.717	ENSPVAG00000007529	-	65	71.717	Pteropus_vampyrus
ENSMODG00000001350	-	85	45.912	ENSPNYG00000019993	ptcd1	84	45.912	Pundamilia_nyererei
ENSMODG00000001350	-	84	49.204	ENSPNAG00000014931	ptcd1	90	48.674	Pygocentrus_nattereri
ENSMODG00000001350	-	84	64.355	ENSRNOG00000000987	Ptcd1	88	64.526	Rattus_norvegicus
ENSMODG00000001350	-	99	58.356	ENSRBIG00000043393	-	98	58.356	Rhinopithecus_bieti
ENSMODG00000001350	-	99	58.356	ENSRROG00000036420	-	98	58.356	Rhinopithecus_roxellana
ENSMODG00000001350	-	99	57.609	ENSSBOG00000024114	-	99	57.959	Saimiri_boliviensis_boliviensis
ENSMODG00000001350	-	100	76.892	ENSSHAG00000011376	-	100	77.185	Sarcophilus_harrisii
ENSMODG00000001350	-	85	56.300	ENSSFOG00015007909	ptcd1	83	56.300	Scleropages_formosus
ENSMODG00000001350	-	85	42.813	ENSSMAG00000000218	ptcd1	97	42.968	Scophthalmus_maximus
ENSMODG00000001350	-	96	42.356	ENSSDUG00000015671	ptcd1	95	42.356	Seriola_dumerili
ENSMODG00000001350	-	84	43.949	ENSSLDG00000014261	ptcd1	86	43.949	Seriola_lalandi_dorsalis
ENSMODG00000001350	-	99	54.183	ENSSPUG00000003540	-	99	54.316	Sphenodon_punctatus
ENSMODG00000001350	-	86	45.412	ENSSPAG00000011049	ptcd1	85	45.426	Stegastes_partitus
ENSMODG00000001350	-	89	63.030	ENSSSCG00000007622	-	96	63.843	Sus_scrofa
ENSMODG00000001350	-	85	58.136	ENSTGUG00000007563	-	100	58.452	Taeniopygia_guttata
ENSMODG00000001350	-	88	46.061	ENSTRUG00000013471	ptcd1	87	46.061	Takifugu_rubripes
ENSMODG00000001350	-	81	48.185	ENSTNIG00000008271	ptcd1	83	48.185	Tetraodon_nigroviridis
ENSMODG00000001350	-	99	59.140	ENSTBEG00000011021	-	99	59.140	Tupaia_belangeri
ENSMODG00000001350	-	99	57.047	ENSTTRG00000003006	-	99	57.047	Tursiops_truncatus
ENSMODG00000001350	-	99	59.184	ENSUAMG00000008049	-	99	59.456	Ursus_americanus
ENSMODG00000001350	-	99	61.413	ENSVVUG00000008836	-	99	61.413	Vulpes_vulpes
ENSMODG00000001350	-	82	53.871	ENSXETG00000009891	ptcd1	88	53.537	Xenopus_tropicalis
ENSMODG00000001350	-	82	45.875	ENSXMAG00000015540	ptcd1	84	44.984	Xiphophorus_maculatus