EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMODG00000002350 (Gene tree)
Gene ID: 100029896
Gene Symbol: -
Alias: -
Full Name: pre-mRNA processing factor 38B
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Plus strand
Length: 8642 bases
Position: chr2:477631852-477640493
Accession: 100029896
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000002865	PRP38	PF03371.15	3.5e-58	1	1
ENSMODP00000002863	PRP38	PF03371.15	1.2e-57	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000002921	-	962	-	ENSMODP00000002865	310 (aa)	-	F7GLJ8
ENSMODT00000002919	-	1641	-	ENSMODP00000002863	547 (aa)	XP_001372377	F7GLK3

Gene Model

Click here to download ENSMODG00000002350's gene model file

Pathways

Pathway ID	Pathway Name	Source
mdo03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000002350's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000002350	-	86	84.249	ENSATEG00000014482	-	65	79.355	Anabas_testudineus
ENSMODG00000002350	-	88	83.813	ENSAMXG00000039494	-	52	77.244	Astyanax_mexicanus
ENSMODG00000002350	-	100	93.078	ENSBTAG00000047874	PRPF38B	60	94.562	Bos_taurus
ENSMODG00000002350	-	85	46.442	WBGene00022434	Y108G3AL.2	61	54.271	Caenorhabditis_elegans
ENSMODG00000002350	-	99	81.169	ENSCAFG00020010992	-	85	90.909	Canis_lupus_dingo
ENSMODG00000002350	-	100	93.078	ENSCHIG00000024357	-	60	94.562	Capra_hircus
ENSMODG00000002350	-	79	91.647	ENSCAPG00000009606	-	51	93.088	Cavia_aperea
ENSMODG00000002350	-	100	93.236	ENSCPOG00000039545	-	60	95.770	Cavia_porcellus
ENSMODG00000002350	-	100	92.572	ENSCLAG00000005801	-	60	95.482	Chinchilla_lanigera
ENSMODG00000002350	-	82	83.399	ENSCHOG00000008972	-	74	76.103	Choloepus_hoffmanni
ENSMODG00000002350	-	100	87.203	ENSCPBG00000028299	-	56	93.811	Chrysemys_picta_bellii
ENSMODG00000002350	-	77	63.750	ENSCSAVG00000009443	-	70	74.737	Ciona_savignyi
ENSMODG00000002350	-	85	82.528	ENSCSEG00000015030	-	64	77.377	Cynoglossus_semilaevis
ENSMODG00000002350	-	65	72.000	FBgn0030468	CG1622	89	75.316	Drosophila_melanogaster
ENSMODG00000002350	-	93	96.181	ENSETEG00000014690	-	73	92.145	Echinops_telfairi
ENSMODG00000002350	-	87	77.860	ENSELUG00000010390	-	61	76.780	Esox_lucius
ENSMODG00000002350	-	87	81.522	ENSGMOG00000012080	-	66	75.563	Gadus_morhua
ENSMODG00000002350	-	100	86.799	ENSGALG00000001972	-	56	94.463	Gallus_gallus
ENSMODG00000002350	-	87	84.307	ENSGAFG00000008943	-	65	80.328	Gambusia_affinis
ENSMODG00000002350	-	100	87.751	ENSGAGG00000001563	-	56	94.788	Gopherus_agassizii
ENSMODG00000002350	-	100	92.559	ENSHGLG00000016583	PRPF38B	60	94.562	Heterocephalus_glaber_female
ENSMODG00000002350	-	100	92.377	ENSHGLG00100015525	-	60	94.562	Heterocephalus_glaber_male
ENSMODG00000002350	-	65	92.574	ENSHCOG00000001071	-	65	79.085	Hippocampus_comes
ENSMODG00000002350	-	87	81.685	ENSKMAG00000005540	-	65	76.873	Kryptolebias_marmoratus
ENSMODG00000002350	-	88	93.066	ENSLACG00000015511	-	51	92.058	Latimeria_chalumnae
ENSMODG00000002350	-	93	98.611	ENSMOCG00000020285	-	60	93.958	Microtus_ochrogaster
ENSMODG00000002350	-	86	83.212	ENSMMOG00000011639	-	67	77.419	Mola_mola
ENSMODG00000002350	-	85	84.871	ENSMALG00000019479	-	58	84.871	Monopterus_albus
ENSMODG00000002350	-	70	96.970	ENSMEUG00000004859	-	85	96.970	Notamacropus_eugenii
ENSMODG00000002350	-	97	77.848	ENSONIG00000010129	-	67	79.032	Oreochromis_niloticus
ENSMODG00000002350	-	100	78.533	ENSOANG00000007343	-	99	90.964	Ornithorhynchus_anatinus
ENSMODG00000002350	-	87	85.091	ENSORLG00000015621	-	85	94.558	Oryzias_latipes
ENSMODG00000002350	-	87	85.091	ENSORLG00020016276	-	86	93.377	Oryzias_latipes_hni
ENSMODG00000002350	-	87	85.091	ENSORLG00015016270	-	71	94.558	Oryzias_latipes_hsok
ENSMODG00000002350	-	87	85.091	ENSOMEG00000022050	-	88	93.333	Oryzias_melastigma
ENSMODG00000002350	-	100	91.833	ENSOGAG00000027048	-	60	94.277	Otolemur_garnettii
ENSMODG00000002350	-	100	91.439	ENSOARG00000018899	-	59	92.145	Ovis_aries
ENSMODG00000002350	-	89	83.929	ENSPKIG00000017291	-	59	79.495	Paramormyrops_kingsleyae
ENSMODG00000002350	-	98	78.882	ENSPKIG00000004815	-	53	88.476	Paramormyrops_kingsleyae
ENSMODG00000002350	-	100	86.654	ENSPSIG00000016569	-	56	93.811	Pelodiscus_sinensis
ENSMODG00000002350	-	87	84.672	ENSPFOG00000004025	-	78	95.238	Poecilia_formosa
ENSMODG00000002350	-	87	84.364	ENSPLAG00000019842	-	66	78.387	Poecilia_latipinna
ENSMODG00000002350	-	87	84.672	ENSPMEG00000004807	-	64	78.641	Poecilia_mexicana
ENSMODG00000002350	-	87	84.672	ENSPREG00000015599	-	80	95.238	Poecilia_reticulata
ENSMODG00000002350	-	87	85.401	ENSPNAG00000017484	-	53	85.294	Pygocentrus_nattereri
ENSMODG00000002350	-	100	88.929	ENSRNOG00000020438	Prpf38b	60	93.656	Rattus_norvegicus
ENSMODG00000002350	-	66	96.569	ENSSFOG00015011251	-	79	97.351	Scleropages_formosus
ENSMODG00000002350	-	86	83.032	ENSSLDG00000023487	-	80	93.919	Seriola_lalandi_dorsalis
ENSMODG00000002350	-	100	96.403	ENSSPUG00000017742	-	56	93.092	Sphenodon_punctatus
ENSMODG00000002350	-	85	83.824	ENSTRUG00000011765	-	67	78.247	Takifugu_rubripes
ENSMODG00000002350	-	85	82.721	ENSTNIG00000015299	-	75	78.571	Tetraodon_nigroviridis
ENSMODG00000002350	-	93	89.583	ENSTBEG00000007504	-	57	89.691	Tupaia_belangeri
ENSMODG00000002350	-	100	98.611	ENSTTRG00000006479	-	60	94.562	Tursiops_truncatus
ENSMODG00000002350	-	100	84.722	ENSVPAG00000005541	-	59	82.927	Vicugna_pacos
ENSMODG00000002350	-	98	85.902	ENSXETG00000005260	prpf38b	61	85.902	Xenopus_tropicalis
ENSMODG00000002350	-	95	79.153	ENSXCOG00000008329	-	65	80.656	Xiphophorus_couchianus
ENSMODG00000002350	-	95	79.153	ENSXMAG00000023831	-	65	80.656	Xiphophorus_maculatus