EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMODG00000003107 (Gene tree)
Gene ID: 100028254
Gene Symbol: SRSF6
Alias: B52|SFRS6|SRP55
Full Name: serine and arginine rich splicing factor 6
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Minus strand
Length: 4050 bases
Position: chr1:386012900-386016949
Accession: 100028254
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000003786	RRM_1	PF00076.22	7e-32	1	2
ENSMODP00000003786	RRM_1	PF00076.22	7e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000003870	SRSF6-201	1520	-	ENSMODP00000003786	341 (aa)	XP_007474254	F6PIF7

Gene Model

Click here to download ENSMODG00000003107's gene model file

Pathways

Pathway ID	Pathway Name	Source
mdo03040	Spliceosome	KEGG
mdo05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000003107's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMODG00000003107	SRSF6	50	37.853	ENSMODG00000003146	SRSF9	71	39.205
ENSMODG00000003107	SRSF6	50	44.318	ENSMODG00000014781	-	59	42.935
ENSMODG00000003107	SRSF6	52	65.000	ENSMODG00000011362	SRSF5	67	57.576
ENSMODG00000003107	SRSF6	54	82.065	ENSMODG00000011052	SRSF4	55	78.804

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000003107	SRSF6	95	91.104	ENSG00000124193	SRSF6	58	97.436	Homo_sapiens
ENSMODG00000003107	SRSF6	55	75.132	ENSAMEG00000003710	SRSF6	54	75.401	Ailuropoda_melanoleuca
ENSMODG00000003107	SRSF6	91	66.026	ENSACIG00000020091	-	95	78.906	Amphilophus_citrinellus
ENSMODG00000003107	SRSF6	87	69.360	ENSACIG00000023658	-	56	86.740	Amphilophus_citrinellus
ENSMODG00000003107	SRSF6	54	84.239	ENSAOCG00000004309	-	57	81.622	Amphiprion_ocellaris
ENSMODG00000003107	SRSF6	54	88.649	ENSAPEG00000013086	-	53	87.097	Amphiprion_percula
ENSMODG00000003107	SRSF6	55	81.579	ENSAPEG00000020746	-	65	81.622	Amphiprion_percula
ENSMODG00000003107	SRSF6	54	81.967	ENSATEG00000007255	-	71	80.541	Anabas_testudineus
ENSMODG00000003107	SRSF6	95	89.846	ENSACAG00000002061	SRSF6	52	91.398	Anolis_carolinensis
ENSMODG00000003107	SRSF6	95	90.798	ENSANAG00000024080	SRSF6	58	97.436	Aotus_nancymaae
ENSMODG00000003107	SRSF6	100	63.714	ENSAMXG00000042692	-	96	77.778	Astyanax_mexicanus
ENSMODG00000003107	SRSF6	54	87.634	ENSAMXG00000003101	-	50	85.638	Astyanax_mexicanus
ENSMODG00000003107	SRSF6	94	86.687	ENSBTAG00000008527	SRSF6	58	96.154	Bos_taurus
ENSMODG00000003107	SRSF6	55	96.809	ENSCJAG00000048403	SRSF6	68	95.699	Callithrix_jacchus
ENSMODG00000003107	SRSF6	55	95.745	ENSCAFG00000009289	SRSF6	58	96.154	Canis_familiaris
ENSMODG00000003107	SRSF6	55	95.745	ENSCAFG00020013559	SRSF6	58	96.154	Canis_lupus_dingo
ENSMODG00000003107	SRSF6	95	87.077	ENSCHIG00000015890	-	58	96.154	Capra_hircus
ENSMODG00000003107	SRSF6	95	86.462	ENSCHIG00000009148	-	54	93.548	Capra_hircus
ENSMODG00000003107	SRSF6	95	71.207	ENSCPOG00000011761	SRSF6	58	97.436	Cavia_porcellus
ENSMODG00000003107	SRSF6	95	91.104	ENSCCAG00000026018	-	58	97.436	Cebus_capucinus
ENSMODG00000003107	SRSF6	95	66.154	ENSCCAG00000018540	-	61	85.027	Cebus_capucinus
ENSMODG00000003107	SRSF6	95	91.385	ENSCATG00000030794	SRSF6	58	97.436	Cercocebus_atys
ENSMODG00000003107	SRSF6	95	89.297	ENSCLAG00000010247	SRSF6	58	97.436	Chinchilla_lanigera
ENSMODG00000003107	SRSF6	95	91.385	ENSCSAG00000014022	SRSF6	54	95.699	Chlorocebus_sabaeus
ENSMODG00000003107	SRSF6	100	85.549	ENSCPBG00000018200	SRSF6	100	89.306	Chrysemys_picta_bellii
ENSMODG00000003107	SRSF6	95	90.462	ENSCANG00000037774	-	54	94.624	Colobus_angolensis_palliatus
ENSMODG00000003107	SRSF6	95	90.154	ENSCGRG00001022339	Srsf6	58	94.872	Cricetulus_griseus_chok1gshd
ENSMODG00000003107	SRSF6	54	83.957	ENSDARG00000016783	srsf6b	82	91.026	Danio_rerio
ENSMODG00000003107	SRSF6	95	88.991	ENSDNOG00000008410	SRSF6	53	95.699	Dasypus_novemcinctus
ENSMODG00000003107	SRSF6	95	89.024	ENSDORG00000028378	Srsf6	58	97.436	Dipodomys_ordii
ENSMODG00000003107	SRSF6	55	95.745	ENSEASG00005023429	SRSF6	54	94.624	Equus_asinus_asinus
ENSMODG00000003107	SRSF6	55	95.745	ENSECAG00000023932	SRSF6	57	94.624	Equus_caballus
ENSMODG00000003107	SRSF6	93	61.950	ENSELUG00000013506	SRSF6	70	88.462	Esox_lucius
ENSMODG00000003107	SRSF6	100	65.015	ENSELUG00000024182	SRSF6	90	84.553	Esox_lucius
ENSMODG00000003107	SRSF6	55	95.745	ENSFCAG00000032814	SRSF6	54	94.624	Felis_catus
ENSMODG00000003107	SRSF6	88	71.523	ENSFHEG00000023065	srsf6a	55	86.486	Fundulus_heteroclitus
ENSMODG00000003107	SRSF6	54	82.796	ENSGMOG00000014458	srsf6a	55	80.734	Gadus_morhua
ENSMODG00000003107	SRSF6	67	63.877	ENSGMOG00000006105	srsf6a	62	70.166	Gadus_morhua
ENSMODG00000003107	SRSF6	100	79.772	ENSGALG00000000990	SRSF6	58	100.000	Gallus_gallus
ENSMODG00000003107	SRSF6	88	61.607	ENSGACG00000006084	srsf6a	53	83.871	Gasterosteus_aculeatus
ENSMODG00000003107	SRSF6	100	85.549	ENSGAGG00000003238	SRSF6	100	89.306	Gopherus_agassizii
ENSMODG00000003107	SRSF6	95	91.104	ENSGGOG00000009808	SRSF6	58	97.436	Gorilla_gorilla
ENSMODG00000003107	SRSF6	64	73.799	ENSHBUG00000006386	-	58	83.243	Haplochromis_burtoni
ENSMODG00000003107	SRSF6	89	60.265	ENSHGLG00000007701	-	57	72.581	Heterocephalus_glaber_female
ENSMODG00000003107	SRSF6	95	89.297	ENSHGLG00000007348	SRSF6	58	97.436	Heterocephalus_glaber_female
ENSMODG00000003107	SRSF6	88	71.000	ENSHCOG00000002740	srsf6a	57	84.324	Hippocampus_comes
ENSMODG00000003107	SRSF6	95	90.798	ENSSTOG00000010866	SRSF6	58	97.436	Ictidomys_tridecemlineatus
ENSMODG00000003107	SRSF6	54	86.413	ENSLBEG00000007356	srsf6a	52	86.022	Labrus_bergylta
ENSMODG00000003107	SRSF6	93	83.019	ENSLACG00000005466	SRSF6	54	94.054	Latimeria_chalumnae
ENSMODG00000003107	SRSF6	95	91.385	ENSMFAG00000036925	SRSF6	58	97.436	Macaca_fascicularis
ENSMODG00000003107	SRSF6	95	91.385	ENSMMUG00000006742	SRSF6	58	97.436	Macaca_mulatta
ENSMODG00000003107	SRSF6	94	90.093	ENSMNEG00000038270	-	54	94.624	Macaca_nemestrina
ENSMODG00000003107	SRSF6	95	90.769	ENSMNEG00000027392	-	58	94.872	Macaca_nemestrina
ENSMODG00000003107	SRSF6	54	88.108	ENSMAMG00000017161	srsf6a	53	86.559	Mastacembelus_armatus
ENSMODG00000003107	SRSF6	70	76.371	ENSMZEG00005008032	-	57	83.243	Maylandia_zebra
ENSMODG00000003107	SRSF6	73	77.255	ENSMGAG00000000888	SRSF6	52	65.248	Meleagris_gallopavo
ENSMODG00000003107	SRSF6	55	96.277	ENSMICG00000008537	SRSF6	58	97.436	Microcebus_murinus
ENSMODG00000003107	SRSF6	95	86.687	MGP_CAROLIEiJ_G0024606	Srsf6	58	94.872	Mus_caroli
ENSMODG00000003107	SRSF6	95	86.997	ENSMUSG00000016921	Srsf6	58	94.872	Mus_musculus
ENSMODG00000003107	SRSF6	95	86.687	MGP_PahariEiJ_G0026050	Srsf6	58	94.872	Mus_pahari
ENSMODG00000003107	SRSF6	95	86.997	MGP_SPRETEiJ_G0025528	Srsf6	58	94.872	Mus_spretus
ENSMODG00000003107	SRSF6	55	95.745	ENSMPUG00000017692	SRSF6	64	94.624	Mustela_putorius_furo
ENSMODG00000003107	SRSF6	94	70.393	ENSMLUG00000016618	SRSF6	54	62.911	Myotis_lucifugus
ENSMODG00000003107	SRSF6	95	88.923	ENSNGAG00000017560	Srsf6	58	97.436	Nannospalax_galili
ENSMODG00000003107	SRSF6	54	82.609	ENSNBRG00000014709	-	58	83.243	Neolamprologus_brichardi
ENSMODG00000003107	SRSF6	53	88.525	ENSNBRG00000001846	-	52	86.559	Neolamprologus_brichardi
ENSMODG00000003107	SRSF6	95	91.104	ENSNLEG00000006524	SRSF6	58	97.436	Nomascus_leucogenys
ENSMODG00000003107	SRSF6	90	99.020	ENSMEUG00000014615	SRSF6	100	99.020	Notamacropus_eugenii
ENSMODG00000003107	SRSF6	54	85.405	ENSONIG00000020247	-	53	84.324	Oreochromis_niloticus
ENSMODG00000003107	SRSF6	55	71.569	ENSOCUG00000009785	-	63	75.130	Oryctolagus_cuniculus
ENSMODG00000003107	SRSF6	63	54.630	ENSOCUG00000023999	-	70	54.396	Oryctolagus_cuniculus
ENSMODG00000003107	SRSF6	55	96.277	ENSOGAG00000014468	SRSF6	54	95.161	Otolemur_garnettii
ENSMODG00000003107	SRSF6	94	82.353	ENSOARG00000003117	SRSF6	53	89.247	Ovis_aries
ENSMODG00000003107	SRSF6	95	90.798	ENSPPAG00000034327	-	54	95.161	Pan_paniscus
ENSMODG00000003107	SRSF6	91	76.774	ENSPPAG00000043131	-	58	82.353	Pan_paniscus
ENSMODG00000003107	SRSF6	55	95.745	ENSPPRG00000008917	SRSF6	54	94.624	Panthera_pardus
ENSMODG00000003107	SRSF6	95	90.798	ENSPTRG00000044686	-	58	97.436	Pan_troglodytes
ENSMODG00000003107	SRSF6	91	76.774	ENSPTRG00000046274	-	58	82.353	Pan_troglodytes
ENSMODG00000003107	SRSF6	95	91.385	ENSPANG00000035224	SRSF6	58	97.436	Papio_anubis
ENSMODG00000003107	SRSF6	52	76.503	ENSPKIG00000015703	-	95	62.667	Paramormyrops_kingsleyae
ENSMODG00000003107	SRSF6	93	68.731	ENSPKIG00000018463	-	77	94.872	Paramormyrops_kingsleyae
ENSMODG00000003107	SRSF6	90	70.968	ENSPMGG00000014963	srsf6a	55	87.568	Periophthalmus_magnuspinnatus
ENSMODG00000003107	SRSF6	100	99.707	ENSPCIG00000003820	SRSF6	100	99.707	Phascolarctos_cinereus
ENSMODG00000003107	SRSF6	54	85.326	ENSPFOG00000006437	srsf6a	50	85.263	Poecilia_formosa
ENSMODG00000003107	SRSF6	88	64.506	ENSPLAG00000009243	srsf6a	80	81.890	Poecilia_latipinna
ENSMODG00000003107	SRSF6	54	87.500	ENSPMEG00000006042	SRSF6	54	87.568	Poecilia_mexicana
ENSMODG00000003107	SRSF6	95	91.104	ENSPPYG00000011019	SRSF6	54	95.699	Pongo_abelii
ENSMODG00000003107	SRSF6	55	96.237	ENSPCAG00000010954	SRSF6	56	95.161	Procavia_capensis
ENSMODG00000003107	SRSF6	55	96.277	ENSPCOG00000026364	SRSF6	58	97.436	Propithecus_coquereli
ENSMODG00000003107	SRSF6	95	87.307	ENSPVAG00000015232	SRSF6	54	95.161	Pteropus_vampyrus
ENSMODG00000003107	SRSF6	53	88.525	ENSPNYG00000011272	-	51	86.559	Pundamilia_nyererei
ENSMODG00000003107	SRSF6	54	82.609	ENSPNYG00000004944	-	58	83.243	Pundamilia_nyererei
ENSMODG00000003107	SRSF6	95	86.997	ENSRNOG00000006380	Srsf6	55	94.624	Rattus_norvegicus
ENSMODG00000003107	SRSF6	94	85.358	ENSRBIG00000041414	SRSF6	62	97.500	Rhinopithecus_bieti
ENSMODG00000003107	SRSF6	95	87.926	ENSRROG00000029989	SRSF6	58	97.436	Rhinopithecus_roxellana
ENSMODG00000003107	SRSF6	94	66.978	ENSSBOG00000034078	-	54	75.824	Saimiri_boliviensis_boliviensis
ENSMODG00000003107	SRSF6	95	91.104	ENSSBOG00000033708	-	58	97.436	Saimiri_boliviensis_boliviensis
ENSMODG00000003107	SRSF6	100	99.413	ENSSHAG00000012805	SRSF6	100	99.413	Sarcophilus_harrisii
ENSMODG00000003107	SRSF6	85	70.242	ENSSFOG00015015169	SRSF6	60	88.108	Scleropages_formosus
ENSMODG00000003107	SRSF6	70	74.477	ENSSMAG00000017447	-	55	78.919	Scophthalmus_maximus
ENSMODG00000003107	SRSF6	54	88.108	ENSSDUG00000016097	srsf6a	53	86.559	Seriola_dumerili
ENSMODG00000003107	SRSF6	54	88.108	ENSSLDG00000022841	srsf6a	54	86.559	Seriola_lalandi_dorsalis
ENSMODG00000003107	SRSF6	100	80.814	ENSSPUG00000004967	SRSF6	58	100.000	Sphenodon_punctatus
ENSMODG00000003107	SRSF6	77	70.412	ENSSPAG00000002362	srsf6a	67	86.772	Stegastes_partitus
ENSMODG00000003107	SRSF6	95	86.769	ENSSSCG00000007362	SRSF6	61	94.624	Sus_scrofa
ENSMODG00000003107	SRSF6	88	71.429	ENSTNIG00000001692	srsf6a	57	86.022	Tetraodon_nigroviridis
ENSMODG00000003107	SRSF6	55	95.745	ENSUAMG00000003559	SRSF6	58	96.154	Ursus_americanus
ENSMODG00000003107	SRSF6	54	86.957	ENSXMAG00000021849	srsf6a	55	85.946	Xiphophorus_maculatus