EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMODG00000003689 (Gene tree)
Gene ID: 100012828
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Plus strand
Length: 197296 bases
Position: chr3:452071184-452268479
Accession: 9962
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000040291	UPF1_Zn_bind	PF09416.10	5e-75	1	1
ENSMODP00000004519	UPF1_Zn_bind	PF09416.10	5.4e-75	1	1
ENSMODP00000040291	ResIII	PF04851.15	1.8e-05	1	1
ENSMODP00000004519	ResIII	PF04851.15	1.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000043395	UPF1-201	3753	-	ENSMODP00000040291	1099 (aa)	-	K7E3D9
ENSMODT00000004618	UPF1-202	3852	-	ENSMODP00000004519	1132 (aa)	-	F7FAH9

Gene Model

Click here to download ENSMODG00000003689's gene model file

Pathways

Pathway ID	Pathway Name	Source
mdo03013	RNA transport	KEGG
mdo03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000003689's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000003689	UPF1	100	98.147	ENSG00000005007	UPF1	100	98.147	Homo_sapiens
ENSMODG00000003689	UPF1	100	91.454	ENSAPOG00000010916	-	100	91.366	Acanthochromis_polyacanthus
ENSMODG00000003689	UPF1	100	90.510	ENSAPOG00000023773	upf1	100	90.513	Acanthochromis_polyacanthus
ENSMODG00000003689	UPF1	100	97.359	ENSAMEG00000011474	UPF1	100	97.359	Ailuropoda_melanoleuca
ENSMODG00000003689	UPF1	93	94.829	ENSACIG00000010985	-	100	94.927	Amphilophus_citrinellus
ENSMODG00000003689	UPF1	100	90.733	ENSACIG00000019949	upf1	100	90.598	Amphilophus_citrinellus
ENSMODG00000003689	UPF1	100	90.026	ENSAOCG00000018519	upf1	100	90.513	Amphiprion_ocellaris
ENSMODG00000003689	UPF1	100	91.454	ENSAOCG00000006352	-	100	92.308	Amphiprion_ocellaris
ENSMODG00000003689	UPF1	100	90.026	ENSAPEG00000016344	upf1	100	90.513	Amphiprion_percula
ENSMODG00000003689	UPF1	100	91.454	ENSAPEG00000006292	-	100	92.308	Amphiprion_percula
ENSMODG00000003689	UPF1	100	89.401	ENSATEG00000017867	upf1	100	90.096	Anabas_testudineus
ENSMODG00000003689	UPF1	100	91.630	ENSATEG00000016606	-	100	91.542	Anabas_testudineus
ENSMODG00000003689	UPF1	95	98.670	ENSAPLG00000009175	UPF1	100	98.956	Anas_platyrhynchos
ENSMODG00000003689	UPF1	95	96.219	ENSANAG00000024107	UPF1	97	96.097	Aotus_nancymaae
ENSMODG00000003689	UPF1	100	91.358	ENSACLG00000022630	-	100	91.182	Astatotilapia_calliptera
ENSMODG00000003689	UPF1	100	90.468	ENSACLG00000007181	upf1	100	90.334	Astatotilapia_calliptera
ENSMODG00000003689	UPF1	100	92.247	ENSAMXG00000042187	upf1	100	92.599	Astyanax_mexicanus
ENSMODG00000003689	UPF1	100	98.147	ENSBTAG00000020922	UPF1	100	98.147	Bos_taurus
ENSMODG00000003689	UPF1	89	49.952	WBGene00004880	smg-2	95	48.082	Caenorhabditis_elegans
ENSMODG00000003689	UPF1	100	98.147	ENSCJAG00000019627	UPF1	100	98.147	Callithrix_jacchus
ENSMODG00000003689	UPF1	100	98.235	ENSCAFG00000014578	UPF1	100	98.235	Canis_familiaris
ENSMODG00000003689	UPF1	100	97.264	ENSCAFG00020012347	UPF1	100	97.264	Canis_lupus_dingo
ENSMODG00000003689	UPF1	100	97.617	ENSCHIG00000011018	UPF1	100	97.617	Capra_hircus
ENSMODG00000003689	UPF1	95	97.812	ENSTSYG00000008877	UPF1	99	97.305	Carlito_syrichta
ENSMODG00000003689	UPF1	95	97.254	ENSCAPG00000005758	UPF1	96	97.254	Cavia_aperea
ENSMODG00000003689	UPF1	100	95.414	ENSCPOG00000025463	UPF1	100	95.414	Cavia_porcellus
ENSMODG00000003689	UPF1	100	97.529	ENSCCAG00000032175	UPF1	100	97.529	Cebus_capucinus
ENSMODG00000003689	UPF1	95	97.727	ENSCATG00000040306	UPF1	98	99.141	Cercocebus_atys
ENSMODG00000003689	UPF1	96	96.964	ENSCLAG00000004037	UPF1	99	98.858	Chinchilla_lanigera
ENSMODG00000003689	UPF1	100	97.176	ENSCSAG00000005276	UPF1	100	97.176	Chlorocebus_sabaeus
ENSMODG00000003689	UPF1	100	96.391	ENSCPBG00000012513	UPF1	100	96.391	Chrysemys_picta_bellii
ENSMODG00000003689	UPF1	78	76.464	ENSCING00000021399	-	99	76.464	Ciona_intestinalis
ENSMODG00000003689	UPF1	99	70.681	ENSCSAVG00000006533	-	99	70.681	Ciona_savignyi
ENSMODG00000003689	UPF1	95	98.039	ENSCANG00000029819	UPF1	99	98.039	Colobus_angolensis_palliatus
ENSMODG00000003689	UPF1	100	96.381	ENSCGRG00001021067	Upf1	100	96.381	Cricetulus_griseus_chok1gshd
ENSMODG00000003689	UPF1	95	97.431	ENSCGRG00000013480	Upf1	99	97.383	Cricetulus_griseus_crigri
ENSMODG00000003689	UPF1	100	85.374	ENSCSEG00000017239	upf1	100	85.198	Cynoglossus_semilaevis
ENSMODG00000003689	UPF1	100	91.711	ENSCSEG00000016159	-	100	91.534	Cynoglossus_semilaevis
ENSMODG00000003689	UPF1	100	91.454	ENSCVAG00000010561	upf1	100	91.278	Cyprinodon_variegatus
ENSMODG00000003689	UPF1	100	92.335	ENSDARG00000016302	upf1	100	92.687	Danio_rerio
ENSMODG00000003689	UPF1	98	92.732	ENSDORG00000009984	Upf1	96	95.047	Dipodomys_ordii
ENSMODG00000003689	UPF1	86	69.654	FBgn0030354	Upf1	80	71.022	Drosophila_melanogaster
ENSMODG00000003689	UPF1	56	83.386	ENSEBUG00000010069	upf1	95	85.299	Eptatretus_burgeri
ENSMODG00000003689	UPF1	100	96.911	ENSEASG00005006549	UPF1	100	96.911	Equus_asinus_asinus
ENSMODG00000003689	UPF1	100	96.911	ENSECAG00000010639	UPF1	100	96.911	Equus_caballus
ENSMODG00000003689	UPF1	100	90.885	ENSELUG00000012916	-	100	90.718	Esox_lucius
ENSMODG00000003689	UPF1	100	89.737	ENSELUG00000020917	upf1	100	89.825	Esox_lucius
ENSMODG00000003689	UPF1	100	98.147	ENSFCAG00000009757	UPF1	100	98.147	Felis_catus
ENSMODG00000003689	UPF1	96	98.577	ENSFALG00000009312	UPF1	97	98.577	Ficedula_albicollis
ENSMODG00000003689	UPF1	98	95.383	ENSFDAG00000014816	UPF1	99	98.763	Fukomys_damarensis
ENSMODG00000003689	UPF1	86	95.250	ENSFHEG00000016276	-	96	95.250	Fundulus_heteroclitus
ENSMODG00000003689	UPF1	100	87.566	ENSFHEG00000006428	upf1	100	87.566	Fundulus_heteroclitus
ENSMODG00000003689	UPF1	100	91.101	ENSGMOG00000007541	upf1	100	91.454	Gadus_morhua
ENSMODG00000003689	UPF1	100	96.999	ENSGALG00000003220	UPF1	100	96.999	Gallus_gallus
ENSMODG00000003689	UPF1	63	95.533	ENSGAFG00000015443	-	85	95.533	Gambusia_affinis
ENSMODG00000003689	UPF1	100	91.182	ENSGAFG00000004831	upf1	100	91.005	Gambusia_affinis
ENSMODG00000003689	UPF1	100	96.646	ENSGAGG00000022217	UPF1	100	96.646	Gopherus_agassizii
ENSMODG00000003689	UPF1	95	99.038	ENSGGOG00000002608	UPF1	99	99.038	Gorilla_gorilla
ENSMODG00000003689	UPF1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSMODG00000003689	UPF1	90	87.356	ENSHBUG00000014694	upf1	100	87.356	Haplochromis_burtoni
ENSMODG00000003689	UPF1	100	97.617	ENSHGLG00000010900	UPF1	100	97.617	Heterocephalus_glaber_female
ENSMODG00000003689	UPF1	95	95.814	ENSHGLG00100005904	UPF1	99	94.322	Heterocephalus_glaber_male
ENSMODG00000003689	UPF1	100	90.476	ENSHCOG00000008918	upf1	100	93.810	Hippocampus_comes
ENSMODG00000003689	UPF1	100	92.423	ENSIPUG00000005108	UPF1	100	92.687	Ictalurus_punctatus
ENSMODG00000003689	UPF1	100	97.617	ENSSTOG00000009196	UPF1	100	97.617	Ictidomys_tridecemlineatus
ENSMODG00000003689	UPF1	100	96.911	ENSJJAG00000023151	Upf1	100	96.911	Jaculus_jaculus
ENSMODG00000003689	UPF1	100	91.454	ENSKMAG00000004962	upf1	100	91.278	Kryptolebias_marmoratus
ENSMODG00000003689	UPF1	100	88.686	ENSLBEG00000014862	upf1	100	89.730	Labrus_bergylta
ENSMODG00000003689	UPF1	100	91.366	ENSLBEG00000027848	-	100	91.278	Labrus_bergylta
ENSMODG00000003689	UPF1	63	97.561	ENSLACG00000008482	UPF1	100	97.561	Latimeria_chalumnae
ENSMODG00000003689	UPF1	100	94.092	ENSLOCG00000002072	upf1	100	94.004	Lepisosteus_oculatus
ENSMODG00000003689	UPF1	100	97.617	ENSLAFG00000014963	UPF1	100	97.617	Loxodonta_africana
ENSMODG00000003689	UPF1	100	98.147	ENSMFAG00000037748	UPF1	100	98.147	Macaca_fascicularis
ENSMODG00000003689	UPF1	100	98.147	ENSMMUG00000023286	UPF1	100	98.147	Macaca_mulatta
ENSMODG00000003689	UPF1	100	98.147	ENSMNEG00000000046	UPF1	100	98.147	Macaca_nemestrina
ENSMODG00000003689	UPF1	95	98.002	ENSMLEG00000028404	UPF1	99	99.049	Mandrillus_leucophaeus
ENSMODG00000003689	UPF1	100	89.053	ENSMAMG00000006229	upf1	100	89.922	Mastacembelus_armatus
ENSMODG00000003689	UPF1	100	90.837	ENSMAMG00000006231	-	100	91.189	Mastacembelus_armatus
ENSMODG00000003689	UPF1	100	91.358	ENSMZEG00005016386	-	100	91.182	Maylandia_zebra
ENSMODG00000003689	UPF1	100	89.062	ENSMZEG00005003489	upf1	100	90.140	Maylandia_zebra
ENSMODG00000003689	UPF1	95	98.194	ENSMGAG00000004745	UPF1	100	98.479	Meleagris_gallopavo
ENSMODG00000003689	UPF1	95	97.431	ENSMAUG00000011398	Upf1	98	95.956	Mesocricetus_auratus
ENSMODG00000003689	UPF1	100	96.911	ENSMICG00000001659	UPF1	100	96.911	Microcebus_murinus
ENSMODG00000003689	UPF1	100	97.176	ENSMOCG00000005699	Upf1	100	97.176	Microtus_ochrogaster
ENSMODG00000003689	UPF1	100	89.762	ENSMMOG00000007881	upf1	100	90.035	Mola_mola
ENSMODG00000003689	UPF1	95	92.625	ENSMMOG00000007537	-	99	92.720	Mola_mola
ENSMODG00000003689	UPF1	100	89.991	ENSMALG00000018100	-	100	89.991	Monopterus_albus
ENSMODG00000003689	UPF1	100	90.115	ENSMALG00000000144	upf1	100	90.291	Monopterus_albus
ENSMODG00000003689	UPF1	100	97.264	MGP_CAROLIEiJ_G0031142	Upf1	100	97.264	Mus_caroli
ENSMODG00000003689	UPF1	100	97.264	ENSMUSG00000058301	Upf1	100	97.264	Mus_musculus
ENSMODG00000003689	UPF1	100	97.264	MGP_PahariEiJ_G0021607	Upf1	100	97.264	Mus_pahari
ENSMODG00000003689	UPF1	100	97.264	MGP_SPRETEiJ_G0032260	Upf1	100	97.264	Mus_spretus
ENSMODG00000003689	UPF1	100	97.264	ENSMPUG00000015516	UPF1	100	97.264	Mustela_putorius_furo
ENSMODG00000003689	UPF1	99	96.811	ENSMLUG00000012122	UPF1	99	96.811	Myotis_lucifugus
ENSMODG00000003689	UPF1	100	97.352	ENSNGAG00000024107	Upf1	100	97.352	Nannospalax_galili
ENSMODG00000003689	UPF1	100	88.791	ENSNBRG00000000670	upf1	100	88.664	Neolamprologus_brichardi
ENSMODG00000003689	UPF1	100	89.099	ENSNBRG00000022069	-	100	93.780	Neolamprologus_brichardi
ENSMODG00000003689	UPF1	95	92.198	ENSNLEG00000006062	UPF1	99	93.245	Nomascus_leucogenys
ENSMODG00000003689	UPF1	83	95.882	ENSMEUG00000014146	-	83	95.882	Notamacropus_eugenii
ENSMODG00000003689	UPF1	95	91.154	ENSOPRG00000014018	UPF1	99	91.154	Ochotona_princeps
ENSMODG00000003689	UPF1	100	96.470	ENSODEG00000012426	UPF1	100	96.470	Octodon_degus
ENSMODG00000003689	UPF1	100	89.323	ENSONIG00000010452	upf1	100	90.401	Oreochromis_niloticus
ENSMODG00000003689	UPF1	100	91.446	ENSONIG00000012729	-	100	91.270	Oreochromis_niloticus
ENSMODG00000003689	UPF1	100	97.357	ENSOANG00000004568	UPF1	100	97.357	Ornithorhynchus_anatinus
ENSMODG00000003689	UPF1	100	91.278	ENSORLG00000008453	upf1	100	91.189	Oryzias_latipes
ENSMODG00000003689	UPF1	100	91.197	ENSORLG00020014758	upf1	100	91.109	Oryzias_latipes_hni
ENSMODG00000003689	UPF1	100	91.197	ENSORLG00015010165	upf1	100	91.109	Oryzias_latipes_hsok
ENSMODG00000003689	UPF1	100	91.366	ENSOMEG00000003665	upf1	100	91.189	Oryzias_melastigma
ENSMODG00000003689	UPF1	100	97.264	ENSOGAG00000012866	UPF1	100	97.264	Otolemur_garnettii
ENSMODG00000003689	UPF1	96	96.419	ENSOARG00000010739	UPF1	99	96.419	Ovis_aries
ENSMODG00000003689	UPF1	95	97.818	ENSPPAG00000043884	UPF1	99	96.615	Pan_paniscus
ENSMODG00000003689	UPF1	100	98.147	ENSPPRG00000023470	UPF1	100	98.147	Panthera_pardus
ENSMODG00000003689	UPF1	95	96.929	ENSPTIG00000010159	UPF1	99	96.929	Panthera_tigris_altaica
ENSMODG00000003689	UPF1	100	98.147	ENSPTRG00000010721	UPF1	100	98.147	Pan_troglodytes
ENSMODG00000003689	UPF1	100	98.147	ENSPANG00000008847	UPF1	100	98.147	Papio_anubis
ENSMODG00000003689	UPF1	91	93.642	ENSPKIG00000006069	upf1	96	93.804	Paramormyrops_kingsleyae
ENSMODG00000003689	UPF1	70	98.693	ENSPSIG00000009491	UPF1	100	98.693	Pelodiscus_sinensis
ENSMODG00000003689	UPF1	100	88.313	ENSPMGG00000017327	upf1	100	88.246	Periophthalmus_magnuspinnatus
ENSMODG00000003689	UPF1	100	97.352	ENSPEMG00000001085	Upf1	100	97.352	Peromyscus_maniculatus_bairdii
ENSMODG00000003689	UPF1	100	86.380	ENSPMAG00000001206	upf1	100	86.116	Petromyzon_marinus
ENSMODG00000003689	UPF1	100	98.411	ENSPCIG00000006156	UPF1	100	98.411	Phascolarctos_cinereus
ENSMODG00000003689	UPF1	100	88.549	ENSPLAG00000018155	-	100	88.374	Poecilia_latipinna
ENSMODG00000003689	UPF1	100	91.270	ENSPLAG00000016232	-	100	91.093	Poecilia_latipinna
ENSMODG00000003689	UPF1	100	89.085	ENSPMEG00000011443	-	100	88.908	Poecilia_mexicana
ENSMODG00000003689	UPF1	100	91.358	ENSPMEG00000016319	-	100	91.182	Poecilia_mexicana
ENSMODG00000003689	UPF1	100	91.093	ENSPREG00000011247	-	100	90.917	Poecilia_reticulata
ENSMODG00000003689	UPF1	100	88.899	ENSPREG00000009940	upf1	100	88.811	Poecilia_reticulata
ENSMODG00000003689	UPF1	100	93.204	ENSPPYG00000009752	UPF1	100	93.204	Pongo_abelii
ENSMODG00000003689	UPF1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSMODG00000003689	UPF1	100	97.970	ENSPCOG00000023813	UPF1	100	97.970	Propithecus_coquereli
ENSMODG00000003689	UPF1	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSMODG00000003689	UPF1	100	91.446	ENSPNYG00000016731	-	100	91.270	Pundamilia_nyererei
ENSMODG00000003689	UPF1	100	89.062	ENSPNYG00000003694	upf1	100	90.140	Pundamilia_nyererei
ENSMODG00000003689	UPF1	100	92.247	ENSPNAG00000025614	upf1	100	92.599	Pygocentrus_nattereri
ENSMODG00000003689	UPF1	100	97.264	ENSRNOG00000020134	Upf1	100	97.264	Rattus_norvegicus
ENSMODG00000003689	UPF1	95	95.705	ENSRBIG00000013894	UPF1	98	98.905	Rhinopithecus_bieti
ENSMODG00000003689	UPF1	95	98.039	ENSRROG00000040935	UPF1	99	98.039	Rhinopithecus_roxellana
ENSMODG00000003689	UPF1	77	55.478	YMR080C	NAM7	88	55.478	Saccharomyces_cerevisiae
ENSMODG00000003689	UPF1	95	97.723	ENSSBOG00000023632	UPF1	98	97.484	Saimiri_boliviensis_boliviensis
ENSMODG00000003689	UPF1	95	98.670	ENSSHAG00000010499	UPF1	100	99.715	Sarcophilus_harrisii
ENSMODG00000003689	UPF1	100	94.180	ENSSFOG00015021095	upf1	99	97.507	Scleropages_formosus
ENSMODG00000003689	UPF1	100	91.454	ENSSMAG00000021018	-	100	91.366	Scophthalmus_maximus
ENSMODG00000003689	UPF1	100	88.251	ENSSMAG00000005055	upf1	100	89.043	Scophthalmus_maximus
ENSMODG00000003689	UPF1	100	91.806	ENSSDUG00000009629	-	100	91.718	Seriola_dumerili
ENSMODG00000003689	UPF1	100	89.314	ENSSDUG00000013320	upf1	100	90.182	Seriola_dumerili
ENSMODG00000003689	UPF1	100	91.806	ENSSLDG00000006878	-	100	91.718	Seriola_lalandi_dorsalis
ENSMODG00000003689	UPF1	100	90.096	ENSSLDG00000020868	upf1	100	90.464	Seriola_lalandi_dorsalis
ENSMODG00000003689	UPF1	100	96.470	ENSSPUG00000010538	UPF1	100	96.470	Sphenodon_punctatus
ENSMODG00000003689	UPF1	100	88.536	ENSSPAG00000000003	upf1	100	88.391	Stegastes_partitus
ENSMODG00000003689	UPF1	100	91.446	ENSSPAG00000011521	-	100	91.270	Stegastes_partitus
ENSMODG00000003689	UPF1	100	98.058	ENSSSCG00000039301	UPF1	100	98.058	Sus_scrofa
ENSMODG00000003689	UPF1	83	89.524	ENSTGUG00000001057	UPF1	100	94.860	Taeniopygia_guttata
ENSMODG00000003689	UPF1	100	90.388	ENSTRUG00000005131	-	100	90.300	Takifugu_rubripes
ENSMODG00000003689	UPF1	100	89.673	ENSTRUG00000000150	upf1	100	89.673	Takifugu_rubripes
ENSMODG00000003689	UPF1	100	93.292	ENSTTRG00000011544	UPF1	100	93.027	Tursiops_truncatus
ENSMODG00000003689	UPF1	100	97.176	ENSUAMG00000007093	UPF1	100	97.176	Ursus_americanus
ENSMODG00000003689	UPF1	95	99.040	ENSUMAG00000006652	UPF1	99	99.274	Ursus_maritimus
ENSMODG00000003689	UPF1	100	97.264	ENSVVUG00000007797	UPF1	100	97.264	Vulpes_vulpes
ENSMODG00000003689	UPF1	100	82.601	ENSXETG00000013602	upf1	100	82.410	Xenopus_tropicalis
ENSMODG00000003689	UPF1	94	94.859	ENSXCOG00000005764	-	100	94.859	Xiphophorus_couchianus
ENSMODG00000003689	UPF1	97	88.788	ENSXCOG00000015275	-	96	88.696	Xiphophorus_couchianus
ENSMODG00000003689	UPF1	100	91.182	ENSXMAG00000002540	-	100	91.005	Xiphophorus_maculatus
ENSMODG00000003689	UPF1	100	89.065	ENSXMAG00000001703	-	100	88.977	Xiphophorus_maculatus