EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMODG00000003703 (Gene tree)
Gene ID: 100014084
Gene Symbol: RIF1
Alias: FLJ10599|FLJ12870
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Plus strand
Length: 45717 bases
Position: chr4:153822134-153867850
Accession: 100014084
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000039511	Rif1_N	PF12231.8	1.4e-75	1	1
ENSMODP00000004539	Rif1_N	PF12231.8	1.4e-72	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000042617	RIF1-202	8162	-	ENSMODP00000039511	2408 (aa)	XP_007494216	K7E160
ENSMODT00000004639	RIF1-201	8201	-	ENSMODP00000004539	2421 (aa)	-	F7FA78

Gene Model

Click here to download ENSMODG00000003703's gene model file

Pathways

Pathway ID	Pathway Name	Source
mdo04550	Signaling pathways regulating pluripotency of stem cells	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000003703's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000003703	RIF1	100	59.456	ENSG00000080345	RIF1	97	77.251	Homo_sapiens
ENSMODG00000003703	RIF1	99	61.062	ENSAMEG00000008461	RIF1	100	60.941	Ailuropoda_melanoleuca
ENSMODG00000003703	RIF1	65	51.095	ENSACIG00000017765	rif1	69	51.852	Amphilophus_citrinellus
ENSMODG00000003703	RIF1	65	50.434	ENSAOCG00000017231	rif1	64	51.118	Amphiprion_ocellaris
ENSMODG00000003703	RIF1	63	56.777	ENSAPEG00000013228	rif1	64	56.197	Amphiprion_percula
ENSMODG00000003703	RIF1	79	44.118	ENSATEG00000022887	rif1	67	48.184	Anabas_testudineus
ENSMODG00000003703	RIF1	89	67.449	ENSAPLG00000007092	RIF1	94	67.449	Anas_platyrhynchos
ENSMODG00000003703	RIF1	86	62.069	ENSACAG00000003714	RIF1	89	61.442	Anolis_carolinensis
ENSMODG00000003703	RIF1	100	59.904	ENSANAG00000024840	RIF1	100	60.040	Aotus_nancymaae
ENSMODG00000003703	RIF1	64	45.460	ENSAMXG00000010910	rif1	51	52.013	Astyanax_mexicanus
ENSMODG00000003703	RIF1	94	59.812	ENSBTAG00000021020	RIF1	99	59.940	Bos_taurus
ENSMODG00000003703	RIF1	100	60.104	ENSCJAG00000003138	RIF1	100	60.208	Callithrix_jacchus
ENSMODG00000003703	RIF1	100	59.300	ENSCAFG00000005670	RIF1	97	59.331	Canis_familiaris
ENSMODG00000003703	RIF1	100	60.016	ENSCAFG00020016401	RIF1	100	60.040	Canis_lupus_dingo
ENSMODG00000003703	RIF1	99	60.656	ENSCHIG00000020327	RIF1	99	60.616	Capra_hircus
ENSMODG00000003703	RIF1	97	73.684	ENSTSYG00000008861	RIF1	99	73.684	Carlito_syrichta
ENSMODG00000003703	RIF1	79	65.116	ENSCAPG00000008957	RIF1	94	65.116	Cavia_aperea
ENSMODG00000003703	RIF1	99	56.686	ENSCPOG00000037898	RIF1	99	56.700	Cavia_porcellus
ENSMODG00000003703	RIF1	100	59.166	ENSCCAG00000024760	RIF1	100	59.383	Cebus_capucinus
ENSMODG00000003703	RIF1	100	60.225	ENSCATG00000033353	RIF1	100	60.184	Cercocebus_atys
ENSMODG00000003703	RIF1	96	57.001	ENSCLAG00000001517	RIF1	99	56.960	Chinchilla_lanigera
ENSMODG00000003703	RIF1	100	60.008	ENSCSAG00000016089	RIF1	100	60.128	Chlorocebus_sabaeus
ENSMODG00000003703	RIF1	97	66.234	ENSCHOG00000007187	RIF1	97	66.234	Choloepus_hoffmanni
ENSMODG00000003703	RIF1	87	71.976	ENSCPBG00000025885	RIF1	91	71.976	Chrysemys_picta_bellii
ENSMODG00000003703	RIF1	100	59.040	ENSCANG00000028962	RIF1	100	59.758	Colobus_angolensis_palliatus
ENSMODG00000003703	RIF1	99	56.924	ENSCGRG00001024589	Rif1	100	57.120	Cricetulus_griseus_chok1gshd
ENSMODG00000003703	RIF1	99	57.481	ENSCGRG00000010713	Rif1	100	57.678	Cricetulus_griseus_crigri
ENSMODG00000003703	RIF1	61	56.410	ENSCSEG00000003945	rif1	63	56.410	Cynoglossus_semilaevis
ENSMODG00000003703	RIF1	52	48.569	ENSCVAG00000022479	rif1	53	48.607	Cyprinodon_variegatus
ENSMODG00000003703	RIF1	64	51.888	ENSDARG00000062650	rif1	65	52.000	Danio_rerio
ENSMODG00000003703	RIF1	99	59.800	ENSDNOG00000011194	RIF1	97	59.800	Dasypus_novemcinctus
ENSMODG00000003703	RIF1	85	61.937	ENSETEG00000012421	RIF1	84	62.209	Echinops_telfairi
ENSMODG00000003703	RIF1	90	85.197	ENSEASG00005023434	RIF1	99	85.197	Equus_asinus_asinus
ENSMODG00000003703	RIF1	96	80.723	ENSECAG00000012679	RIF1	100	80.723	Equus_caballus
ENSMODG00000003703	RIF1	64	52.163	ENSELUG00000006826	rif1	56	52.226	Esox_lucius
ENSMODG00000003703	RIF1	100	59.547	ENSFCAG00000029742	RIF1	100	59.745	Felis_catus
ENSMODG00000003703	RIF1	79	63.609	ENSFALG00000013874	RIF1	89	63.609	Ficedula_albicollis
ENSMODG00000003703	RIF1	99	58.578	ENSFDAG00000006538	RIF1	99	58.579	Fukomys_damarensis
ENSMODG00000003703	RIF1	51	50.607	ENSFHEG00000013721	rif1	53	49.921	Fundulus_heteroclitus
ENSMODG00000003703	RIF1	55	52.846	ENSGMOG00000003517	rif1	81	52.846	Gadus_morhua
ENSMODG00000003703	RIF1	81	65.689	ENSGALG00000012484	RIF1	91	66.276	Gallus_gallus
ENSMODG00000003703	RIF1	71	49.213	ENSGAFG00000017196	rif1	72	53.833	Gambusia_affinis
ENSMODG00000003703	RIF1	61	56.769	ENSGACG00000008579	rif1	64	56.769	Gasterosteus_aculeatus
ENSMODG00000003703	RIF1	90	71.642	ENSGAGG00000012595	RIF1	96	71.642	Gopherus_agassizii
ENSMODG00000003703	RIF1	53	79.714	ENSGGOG00000040178	RIF1	96	79.714	Gorilla_gorilla
ENSMODG00000003703	RIF1	66	55.967	ENSHBUG00000007125	rif1	69	55.967	Haplochromis_burtoni
ENSMODG00000003703	RIF1	94	57.422	ENSHGLG00100009807	RIF1	99	57.318	Heterocephalus_glaber_male
ENSMODG00000003703	RIF1	65	49.721	ENSHCOG00000015943	rif1	60	49.840	Hippocampus_comes
ENSMODG00000003703	RIF1	66	53.643	ENSIPUG00000021703	rif1	66	53.439	Ictalurus_punctatus
ENSMODG00000003703	RIF1	99	56.135	ENSJJAG00000023000	Rif1	99	56.288	Jaculus_jaculus
ENSMODG00000003703	RIF1	64	49.485	ENSKMAG00000002852	rif1	66	49.485	Kryptolebias_marmoratus
ENSMODG00000003703	RIF1	70	50.993	ENSLBEG00000023196	rif1	62	50.993	Labrus_bergylta
ENSMODG00000003703	RIF1	91	64.095	ENSLACG00000005425	RIF1	93	64.392	Latimeria_chalumnae
ENSMODG00000003703	RIF1	85	50.804	ENSLOCG00000002657	rif1	82	50.804	Lepisosteus_oculatus
ENSMODG00000003703	RIF1	99	60.635	ENSLAFG00000009796	RIF1	100	60.555	Loxodonta_africana
ENSMODG00000003703	RIF1	100	60.265	ENSMFAG00000032233	RIF1	100	60.225	Macaca_fascicularis
ENSMODG00000003703	RIF1	100	60.305	ENSMMUG00000008611	RIF1	100	60.265	Macaca_mulatta
ENSMODG00000003703	RIF1	100	60.272	ENSMNEG00000031616	RIF1	100	60.232	Macaca_nemestrina
ENSMODG00000003703	RIF1	100	60.305	ENSMLEG00000042945	RIF1	100	60.265	Mandrillus_leucophaeus
ENSMODG00000003703	RIF1	81	44.723	ENSMAMG00000001745	rif1	74	49.363	Mastacembelus_armatus
ENSMODG00000003703	RIF1	68	49.889	ENSMZEG00005020920	rif1	73	49.815	Maylandia_zebra
ENSMODG00000003703	RIF1	86	61.972	ENSMGAG00000012732	RIF1	91	62.817	Meleagris_gallopavo
ENSMODG00000003703	RIF1	100	60.741	ENSMICG00000046127	RIF1	100	60.821	Microcebus_murinus
ENSMODG00000003703	RIF1	99	56.187	ENSMOCG00000009381	Rif1	100	56.187	Microtus_ochrogaster
ENSMODG00000003703	RIF1	51	49.277	ENSMMOG00000006519	rif1	51	49.162	Mola_mola
ENSMODG00000003703	RIF1	66	51.878	ENSMALG00000016759	rif1	73	52.665	Monopterus_albus
ENSMODG00000003703	RIF1	99	56.917	MGP_CAROLIEiJ_G0023555	Rif1	100	56.981	Mus_caroli
ENSMODG00000003703	RIF1	99	56.695	ENSMUSG00000036202	Rif1	100	56.574	Mus_musculus
ENSMODG00000003703	RIF1	99	55.457	MGP_PahariEiJ_G0025006	Rif1	100	55.457	Mus_pahari
ENSMODG00000003703	RIF1	99	56.895	MGP_SPRETEiJ_G0024476	Rif1	100	56.872	Mus_spretus
ENSMODG00000003703	RIF1	100	60.111	ENSMPUG00000000371	RIF1	100	59.992	Mustela_putorius_furo
ENSMODG00000003703	RIF1	90	57.074	ENSMLUG00000003376	RIF1	100	57.414	Myotis_lucifugus
ENSMODG00000003703	RIF1	100	58.952	ENSNGAG00000009268	Rif1	100	59.131	Nannospalax_galili
ENSMODG00000003703	RIF1	63	51.510	ENSNBRG00000014257	rif1	67	51.165	Neolamprologus_brichardi
ENSMODG00000003703	RIF1	100	58.088	ENSNLEG00000010955	RIF1	100	58.197	Nomascus_leucogenys
ENSMODG00000003703	RIF1	84	88.525	ENSMEUG00000007601	-	88	88.525	Notamacropus_eugenii
ENSMODG00000003703	RIF1	99	56.394	ENSODEG00000003950	RIF1	99	56.530	Octodon_degus
ENSMODG00000003703	RIF1	56	49.668	ENSONIG00000013657	rif1	63	49.413	Oreochromis_niloticus
ENSMODG00000003703	RIF1	84	77.495	ENSOANG00000006078	-	85	77.495	Ornithorhynchus_anatinus
ENSMODG00000003703	RIF1	100	58.896	ENSOCUG00000017435	RIF1	100	59.216	Oryctolagus_cuniculus
ENSMODG00000003703	RIF1	67	48.407	ENSORLG00020001302	rif1	71	48.602	Oryzias_latipes_hni
ENSMODG00000003703	RIF1	66	49.400	ENSORLG00015000009	rif1	69	48.397	Oryzias_latipes_hsok
ENSMODG00000003703	RIF1	64	49.392	ENSOMEG00000021513	rif1	69	48.407	Oryzias_melastigma
ENSMODG00000003703	RIF1	99	60.800	ENSOARG00000008930	RIF1	99	60.760	Ovis_aries
ENSMODG00000003703	RIF1	100	59.481	ENSPPAG00000023754	RIF1	100	59.728	Pan_paniscus
ENSMODG00000003703	RIF1	100	59.476	ENSPPRG00000003618	RIF1	100	59.476	Panthera_pardus
ENSMODG00000003703	RIF1	100	59.674	ENSPTIG00000020652	RIF1	100	59.674	Panthera_tigris_altaica
ENSMODG00000003703	RIF1	100	59.552	ENSPTRG00000012534	RIF1	100	59.800	Pan_troglodytes
ENSMODG00000003703	RIF1	100	60.345	ENSPANG00000008525	RIF1	100	60.305	Papio_anubis
ENSMODG00000003703	RIF1	66	44.069	ENSPKIG00000004267	rif1	72	43.993	Paramormyrops_kingsleyae
ENSMODG00000003703	RIF1	67	45.020	ENSPMGG00000016141	rif1	75	46.955	Periophthalmus_magnuspinnatus
ENSMODG00000003703	RIF1	72	61.587	ENSPEMG00000000446	Rif1	71	61.587	Peromyscus_maniculatus_bairdii
ENSMODG00000003703	RIF1	99	84.730	ENSPCIG00000009185	RIF1	99	84.565	Phascolarctos_cinereus
ENSMODG00000003703	RIF1	62	49.789	ENSPFOG00000000554	-	68	49.790	Poecilia_formosa
ENSMODG00000003703	RIF1	69	50.037	ENSPFOG00000017804	rif1	70	50.037	Poecilia_formosa
ENSMODG00000003703	RIF1	68	50.265	ENSPLAG00000017945	rif1	73	50.264	Poecilia_latipinna
ENSMODG00000003703	RIF1	61	53.596	ENSPREG00000018052	rif1	66	54.185	Poecilia_reticulata
ENSMODG00000003703	RIF1	100	59.744	ENSPPYG00000012846	RIF1	100	60.072	Pongo_abelii
ENSMODG00000003703	RIF1	81	74.757	ENSPCAG00000009032	RIF1	81	74.757	Procavia_capensis
ENSMODG00000003703	RIF1	100	60.605	ENSPCOG00000027888	RIF1	100	60.716	Propithecus_coquereli
ENSMODG00000003703	RIF1	68	49.085	ENSPNYG00000012940	rif1	72	49.390	Pundamilia_nyererei
ENSMODG00000003703	RIF1	51	53.183	ENSPNAG00000016685	rif1	51	53.355	Pygocentrus_nattereri
ENSMODG00000003703	RIF1	99	55.556	ENSRNOG00000054901	Rif1	100	55.641	Rattus_norvegicus
ENSMODG00000003703	RIF1	100	59.624	ENSRBIG00000003704	RIF1	100	59.832	Rhinopithecus_bieti
ENSMODG00000003703	RIF1	100	60.096	ENSRROG00000028206	RIF1	100	60.272	Rhinopithecus_roxellana
ENSMODG00000003703	RIF1	97	77.419	ENSSBOG00000029530	RIF1	100	77.419	Saimiri_boliviensis_boliviensis
ENSMODG00000003703	RIF1	99	82.609	ENSSHAG00000018552	RIF1	99	82.609	Sarcophilus_harrisii
ENSMODG00000003703	RIF1	64	51.083	ENSSFOG00015021539	rif1	69	52.048	Scleropages_formosus
ENSMODG00000003703	RIF1	64	50.757	ENSSMAG00000011704	rif1	61	50.234	Scophthalmus_maximus
ENSMODG00000003703	RIF1	64	50.949	ENSSDUG00000015632	rif1	69	50.633	Seriola_dumerili
ENSMODG00000003703	RIF1	51	50.279	ENSSLDG00000019531	rif1	67	48.458	Seriola_lalandi_dorsalis
ENSMODG00000003703	RIF1	51	73.154	ENSSARG00000007161	-	50	72.819	Sorex_araneus
ENSMODG00000003703	RIF1	91	71.856	ENSSPUG00000003062	RIF1	96	72.156	Sphenodon_punctatus
ENSMODG00000003703	RIF1	50	58.487	ENSSPAG00000018359	rif1	75	58.487	Stegastes_partitus
ENSMODG00000003703	RIF1	100	59.618	ENSSSCG00000016395	RIF1	100	59.785	Sus_scrofa
ENSMODG00000003703	RIF1	65	50.876	ENSTRUG00000015808	rif1	69	50.796	Takifugu_rubripes
ENSMODG00000003703	RIF1	68	49.167	ENSTNIG00000011538	rif1	70	49.167	Tetraodon_nigroviridis
ENSMODG00000003703	RIF1	77	76.582	ENSTBEG00000016082	RIF1	75	76.582	Tupaia_belangeri
ENSMODG00000003703	RIF1	100	60.447	ENSTTRG00000011190	RIF1	100	60.247	Tursiops_truncatus
ENSMODG00000003703	RIF1	90	58.862	ENSUAMG00000026385	RIF1	99	58.730	Ursus_americanus
ENSMODG00000003703	RIF1	97	74.234	ENSUMAG00000000337	RIF1	99	74.234	Ursus_maritimus
ENSMODG00000003703	RIF1	100	58.669	ENSVPAG00000002162	RIF1	100	58.946	Vicugna_pacos
ENSMODG00000003703	RIF1	100	59.984	ENSVVUG00000011293	RIF1	100	59.944	Vulpes_vulpes
ENSMODG00000003703	RIF1	75	46.227	ENSXETG00000004530	rif1	86	62.874	Xenopus_tropicalis