EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMODG00000004213 (Gene tree)
Gene ID: 100016486
Gene Symbol: EXOSC1
Alias: CGI-108|CSL4|Csl4p|SKI4|Ski4p|hCsl4p|p13
Full Name: exosome component 1
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Plus strand
Length: 6636 bases
Position: chr1:73731045-73737680
Accession: 100016486
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000005190	EXOSC1	PF10447.9	4e-15	1	1
ENSMODP00000005190	ECR1_N	PF14382.6	2.3e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000005302	EXOSC1-201	1551	-	ENSMODP00000005190	196 (aa)	XP_007478753	F6XQF9

Gene Model

Click here to download ENSMODG00000004213's gene model file

Pathways

Pathway ID	Pathway Name	Source
mdo03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000004213's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000004213	EXOSC1	100	91.837	ENSG00000171311	EXOSC1	100	91.837	Homo_sapiens
ENSMODG00000004213	EXOSC1	98	81.250	ENSAPOG00000007822	exosc1	98	81.250	Acanthochromis_polyacanthus
ENSMODG00000004213	EXOSC1	100	92.347	ENSAMEG00000000129	EXOSC1	100	92.347	Ailuropoda_melanoleuca
ENSMODG00000004213	EXOSC1	97	78.534	ENSACIG00000018956	exosc1	93	78.534	Amphilophus_citrinellus
ENSMODG00000004213	EXOSC1	98	81.250	ENSAOCG00000010699	exosc1	98	81.250	Amphiprion_ocellaris
ENSMODG00000004213	EXOSC1	92	71.111	ENSAPEG00000012690	exosc1	96	71.111	Amphiprion_percula
ENSMODG00000004213	EXOSC1	98	80.729	ENSATEG00000018683	exosc1	98	80.729	Anabas_testudineus
ENSMODG00000004213	EXOSC1	99	81.959	ENSACAG00000002101	EXOSC1	99	81.959	Anolis_carolinensis
ENSMODG00000004213	EXOSC1	100	92.857	ENSANAG00000034669	EXOSC1	100	92.857	Aotus_nancymaae
ENSMODG00000004213	EXOSC1	98	80.208	ENSACLG00000021243	exosc1	98	80.208	Astatotilapia_calliptera
ENSMODG00000004213	EXOSC1	98	82.292	ENSAMXG00000011116	exosc1	98	82.292	Astyanax_mexicanus
ENSMODG00000004213	EXOSC1	100	92.857	ENSBTAG00000012699	EXOSC1	100	92.857	Bos_taurus
ENSMODG00000004213	EXOSC1	92	32.275	WBGene00012966	exos-1	90	32.275	Caenorhabditis_elegans
ENSMODG00000004213	EXOSC1	100	92.347	ENSCJAG00000016586	EXOSC1	100	92.347	Callithrix_jacchus
ENSMODG00000004213	EXOSC1	100	92.857	ENSCAFG00000009068	EXOSC1	94	92.857	Canis_familiaris
ENSMODG00000004213	EXOSC1	100	92.857	ENSCAFG00020006002	EXOSC1	94	92.857	Canis_lupus_dingo
ENSMODG00000004213	EXOSC1	100	92.857	ENSCHIG00000015253	EXOSC1	100	92.857	Capra_hircus
ENSMODG00000004213	EXOSC1	100	91.327	ENSTSYG00000000760	EXOSC1	100	91.327	Carlito_syrichta
ENSMODG00000004213	EXOSC1	100	92.347	ENSCPOG00000001173	EXOSC1	100	92.347	Cavia_porcellus
ENSMODG00000004213	EXOSC1	100	51.515	ENSCCAG00000023986	EXOSC1	100	51.515	Cebus_capucinus
ENSMODG00000004213	EXOSC1	100	91.837	ENSCATG00000034114	EXOSC1	100	91.837	Cercocebus_atys
ENSMODG00000004213	EXOSC1	100	92.857	ENSCLAG00000002463	EXOSC1	100	92.857	Chinchilla_lanigera
ENSMODG00000004213	EXOSC1	100	91.327	ENSCSAG00000005870	EXOSC1	100	91.327	Chlorocebus_sabaeus
ENSMODG00000004213	EXOSC1	96	79.255	ENSCHOG00000006477	EXOSC1	100	79.255	Choloepus_hoffmanni
ENSMODG00000004213	EXOSC1	54	77.358	ENSCPBG00000011949	EXOSC1	88	77.358	Chrysemys_picta_bellii
ENSMODG00000004213	EXOSC1	95	55.319	ENSCING00000022734	-	89	55.319	Ciona_intestinalis
ENSMODG00000004213	EXOSC1	95	54.787	ENSCSAVG00000010865	-	95	54.787	Ciona_savignyi
ENSMODG00000004213	EXOSC1	100	91.837	ENSCANG00000034159	EXOSC1	100	91.837	Colobus_angolensis_palliatus
ENSMODG00000004213	EXOSC1	100	91.837	ENSCGRG00001000335	Exosc1	100	91.837	Cricetulus_griseus_chok1gshd
ENSMODG00000004213	EXOSC1	100	91.837	ENSCGRG00000011602	Exosc1	100	91.837	Cricetulus_griseus_crigri
ENSMODG00000004213	EXOSC1	98	68.750	ENSCSEG00000007895	exosc1	95	68.750	Cynoglossus_semilaevis
ENSMODG00000004213	EXOSC1	98	76.166	ENSCVAG00000016748	exosc1	99	76.166	Cyprinodon_variegatus
ENSMODG00000004213	EXOSC1	98	81.250	ENSDARG00000059841	exosc1	98	81.250	Danio_rerio
ENSMODG00000004213	EXOSC1	75	91.216	ENSDNOG00000007983	EXOSC1	100	91.216	Dasypus_novemcinctus
ENSMODG00000004213	EXOSC1	100	93.878	ENSDORG00000016528	Exosc1	100	93.878	Dipodomys_ordii
ENSMODG00000004213	EXOSC1	94	50.526	FBgn0032346	Csl4	92	50.526	Drosophila_melanogaster
ENSMODG00000004213	EXOSC1	100	90.816	ENSETEG00000002469	-	100	90.816	Echinops_telfairi
ENSMODG00000004213	EXOSC1	99	62.944	ENSEBUG00000008164	exosc1	98	62.944	Eptatretus_burgeri
ENSMODG00000004213	EXOSC1	100	83.673	ENSEASG00005008684	EXOSC1	100	83.673	Equus_asinus_asinus
ENSMODG00000004213	EXOSC1	61	72.269	ENSECAG00000010621	EXOSC1	71	72.269	Equus_caballus
ENSMODG00000004213	EXOSC1	100	92.347	ENSEEUG00000005647	EXOSC1	100	92.347	Erinaceus_europaeus
ENSMODG00000004213	EXOSC1	97	78.061	ENSELUG00000017369	exosc1	86	78.061	Esox_lucius
ENSMODG00000004213	EXOSC1	100	92.347	ENSFCAG00000040563	EXOSC1	94	92.347	Felis_catus
ENSMODG00000004213	EXOSC1	100	83.673	ENSFALG00000008450	EXOSC1	100	83.673	Ficedula_albicollis
ENSMODG00000004213	EXOSC1	100	93.367	ENSFDAG00000000846	EXOSC1	100	93.367	Fukomys_damarensis
ENSMODG00000004213	EXOSC1	98	75.648	ENSFHEG00000009154	exosc1	99	75.648	Fundulus_heteroclitus
ENSMODG00000004213	EXOSC1	98	80.729	ENSGMOG00000008993	exosc1	98	80.729	Gadus_morhua
ENSMODG00000004213	EXOSC1	100	72.449	ENSGALG00000039917	EXOSC1	100	86.395	Gallus_gallus
ENSMODG00000004213	EXOSC1	98	75.648	ENSGAFG00000010265	exosc1	94	75.648	Gambusia_affinis
ENSMODG00000004213	EXOSC1	98	79.688	ENSGACG00000018936	exosc1	98	79.688	Gasterosteus_aculeatus
ENSMODG00000004213	EXOSC1	100	82.653	ENSGAGG00000019192	EXOSC1	100	82.653	Gopherus_agassizii
ENSMODG00000004213	EXOSC1	100	80.612	ENSGGOG00000003099	EXOSC1	100	80.612	Gorilla_gorilla
ENSMODG00000004213	EXOSC1	98	80.208	ENSHBUG00000017857	exosc1	98	80.208	Haplochromis_burtoni
ENSMODG00000004213	EXOSC1	100	92.857	ENSHGLG00000016927	EXOSC1	100	92.857	Heterocephalus_glaber_female
ENSMODG00000004213	EXOSC1	100	92.857	ENSHGLG00100012208	EXOSC1	100	92.857	Heterocephalus_glaber_male
ENSMODG00000004213	EXOSC1	98	79.688	ENSHCOG00000019882	exosc1	98	79.688	Hippocampus_comes
ENSMODG00000004213	EXOSC1	98	81.771	ENSIPUG00000007685	exosc1	98	81.771	Ictalurus_punctatus
ENSMODG00000004213	EXOSC1	100	93.367	ENSSTOG00000006615	EXOSC1	100	93.367	Ictidomys_tridecemlineatus
ENSMODG00000004213	EXOSC1	62	79.508	ENSSTOG00000029860	-	93	79.508	Ictidomys_tridecemlineatus
ENSMODG00000004213	EXOSC1	100	92.347	ENSJJAG00000013311	Exosc1	100	92.347	Jaculus_jaculus
ENSMODG00000004213	EXOSC1	98	77.720	ENSKMAG00000001202	exosc1	81	77.720	Kryptolebias_marmoratus
ENSMODG00000004213	EXOSC1	98	80.729	ENSLBEG00000011448	exosc1	98	80.729	Labrus_bergylta
ENSMODG00000004213	EXOSC1	98	60.101	ENSLOCG00000003776	exosc1	99	60.101	Lepisosteus_oculatus
ENSMODG00000004213	EXOSC1	100	92.857	ENSLAFG00000015983	EXOSC1	100	92.857	Loxodonta_africana
ENSMODG00000004213	EXOSC1	100	91.837	ENSMFAG00000001493	EXOSC1	100	91.837	Macaca_fascicularis
ENSMODG00000004213	EXOSC1	100	91.837	ENSMMUG00000020028	EXOSC1	100	85.000	Macaca_mulatta
ENSMODG00000004213	EXOSC1	100	91.837	ENSMNEG00000029816	EXOSC1	100	91.837	Macaca_nemestrina
ENSMODG00000004213	EXOSC1	100	86.224	ENSMLEG00000027643	EXOSC1	100	86.224	Mandrillus_leucophaeus
ENSMODG00000004213	EXOSC1	98	80.829	ENSMAMG00000012200	exosc1	99	80.829	Mastacembelus_armatus
ENSMODG00000004213	EXOSC1	98	80.208	ENSMZEG00005007042	exosc1	98	80.208	Maylandia_zebra
ENSMODG00000004213	EXOSC1	100	80.612	ENSMAUG00000020462	-	100	80.612	Mesocricetus_auratus
ENSMODG00000004213	EXOSC1	100	92.347	ENSMICG00000007664	EXOSC1	92	92.347	Microcebus_murinus
ENSMODG00000004213	EXOSC1	100	91.837	ENSMOCG00000006004	-	100	91.837	Microtus_ochrogaster
ENSMODG00000004213	EXOSC1	97	86.911	ENSMOCG00000017124	-	97	86.911	Microtus_ochrogaster
ENSMODG00000004213	EXOSC1	100	59.694	ENSMMOG00000021403	exosc1	100	59.694	Mola_mola
ENSMODG00000004213	EXOSC1	94	81.081	ENSMALG00000007061	exosc1	92	81.081	Monopterus_albus
ENSMODG00000004213	EXOSC1	100	91.327	MGP_CAROLIEiJ_G0022959	Exosc1	100	91.327	Mus_caroli
ENSMODG00000004213	EXOSC1	100	91.327	ENSMUSG00000034321	Exosc1	100	91.327	Mus_musculus
ENSMODG00000004213	EXOSC1	100	91.837	MGP_PahariEiJ_G0014449	Exosc1	100	91.837	Mus_pahari
ENSMODG00000004213	EXOSC1	100	91.327	MGP_SPRETEiJ_G0023880	Exosc1	100	91.327	Mus_spretus
ENSMODG00000004213	EXOSC1	100	92.347	ENSMPUG00000017044	EXOSC1	100	92.347	Mustela_putorius_furo
ENSMODG00000004213	EXOSC1	100	91.837	ENSMLUG00000009228	EXOSC1	100	91.837	Myotis_lucifugus
ENSMODG00000004213	EXOSC1	100	90.816	ENSNGAG00000022033	Exosc1	100	90.816	Nannospalax_galili
ENSMODG00000004213	EXOSC1	98	60.622	ENSNBRG00000024007	exosc1	98	60.622	Neolamprologus_brichardi
ENSMODG00000004213	EXOSC1	100	91.327	ENSNLEG00000013872	EXOSC1	100	91.327	Nomascus_leucogenys
ENSMODG00000004213	EXOSC1	59	97.391	ENSMEUG00000002246	EXOSC1	100	97.391	Notamacropus_eugenii
ENSMODG00000004213	EXOSC1	100	92.347	ENSOPRG00000005065	EXOSC1	100	92.347	Ochotona_princeps
ENSMODG00000004213	EXOSC1	100	93.367	ENSODEG00000016709	EXOSC1	100	93.367	Octodon_degus
ENSMODG00000004213	EXOSC1	98	80.208	ENSONIG00000017683	exosc1	98	80.208	Oreochromis_niloticus
ENSMODG00000004213	EXOSC1	59	93.966	ENSOANG00000006563	EXOSC1	98	92.000	Ornithorhynchus_anatinus
ENSMODG00000004213	EXOSC1	100	92.386	ENSOCUG00000011898	-	100	92.386	Oryctolagus_cuniculus
ENSMODG00000004213	EXOSC1	100	87.245	ENSOCUG00000026461	-	100	87.245	Oryctolagus_cuniculus
ENSMODG00000004213	EXOSC1	98	78.125	ENSORLG00000011595	exosc1	98	78.125	Oryzias_latipes
ENSMODG00000004213	EXOSC1	98	78.125	ENSORLG00020005831	exosc1	98	78.125	Oryzias_latipes_hni
ENSMODG00000004213	EXOSC1	98	78.125	ENSORLG00015004317	exosc1	98	78.125	Oryzias_latipes_hsok
ENSMODG00000004213	EXOSC1	98	63.021	ENSOMEG00000013907	exosc1	98	63.021	Oryzias_melastigma
ENSMODG00000004213	EXOSC1	100	92.347	ENSOGAG00000016259	EXOSC1	100	92.347	Otolemur_garnettii
ENSMODG00000004213	EXOSC1	100	92.347	ENSOARG00000010136	EXOSC1	100	92.347	Ovis_aries
ENSMODG00000004213	EXOSC1	100	85.859	ENSPPAG00000039842	EXOSC1	100	85.859	Pan_paniscus
ENSMODG00000004213	EXOSC1	100	92.347	ENSPPRG00000023366	EXOSC1	100	92.347	Panthera_pardus
ENSMODG00000004213	EXOSC1	100	92.347	ENSPTIG00000017701	EXOSC1	100	92.347	Panthera_tigris_altaica
ENSMODG00000004213	EXOSC1	100	91.837	ENSPTRG00000002808	EXOSC1	100	91.837	Pan_troglodytes
ENSMODG00000004213	EXOSC1	100	91.837	ENSPANG00000021324	EXOSC1	100	91.837	Papio_anubis
ENSMODG00000004213	EXOSC1	98	81.771	ENSPKIG00000016037	exosc1	98	81.771	Paramormyrops_kingsleyae
ENSMODG00000004213	EXOSC1	78	78.289	ENSPSIG00000013571	EXOSC1	98	79.675	Pelodiscus_sinensis
ENSMODG00000004213	EXOSC1	98	68.229	ENSPMGG00000014002	exosc1	98	68.229	Periophthalmus_magnuspinnatus
ENSMODG00000004213	EXOSC1	100	91.837	ENSPEMG00000010710	-	100	91.837	Peromyscus_maniculatus_bairdii
ENSMODG00000004213	EXOSC1	95	70.745	ENSPMAG00000000195	exosc1	95	70.745	Petromyzon_marinus
ENSMODG00000004213	EXOSC1	100	97.449	ENSPCIG00000002210	EXOSC1	99	97.449	Phascolarctos_cinereus
ENSMODG00000004213	EXOSC1	98	75.648	ENSPFOG00000006755	exosc1	94	75.648	Poecilia_formosa
ENSMODG00000004213	EXOSC1	98	75.648	ENSPLAG00000005880	exosc1	99	75.648	Poecilia_latipinna
ENSMODG00000004213	EXOSC1	98	75.648	ENSPMEG00000015598	exosc1	94	75.648	Poecilia_mexicana
ENSMODG00000004213	EXOSC1	98	65.285	ENSPREG00000000405	exosc1	93	65.285	Poecilia_reticulata
ENSMODG00000004213	EXOSC1	100	91.327	ENSPPYG00000002531	EXOSC1	100	91.327	Pongo_abelii
ENSMODG00000004213	EXOSC1	100	91.837	ENSPCAG00000009135	EXOSC1	100	91.837	Procavia_capensis
ENSMODG00000004213	EXOSC1	100	86.224	ENSPCOG00000027539	EXOSC1	100	86.224	Propithecus_coquereli
ENSMODG00000004213	EXOSC1	100	92.347	ENSPVAG00000003372	EXOSC1	100	92.347	Pteropus_vampyrus
ENSMODG00000004213	EXOSC1	98	80.208	ENSPNYG00000021745	exosc1	98	80.208	Pundamilia_nyererei
ENSMODG00000004213	EXOSC1	98	81.250	ENSPNAG00000001944	exosc1	98	81.250	Pygocentrus_nattereri
ENSMODG00000004213	EXOSC1	100	91.837	ENSRNOG00000048708	Exosc1	100	91.837	Rattus_norvegicus
ENSMODG00000004213	EXOSC1	100	91.837	ENSRBIG00000035618	EXOSC1	100	91.837	Rhinopithecus_bieti
ENSMODG00000004213	EXOSC1	100	91.837	ENSRROG00000032589	EXOSC1	92	91.837	Rhinopithecus_roxellana
ENSMODG00000004213	EXOSC1	100	92.857	ENSSBOG00000000359	EXOSC1	100	92.857	Saimiri_boliviensis_boliviensis
ENSMODG00000004213	EXOSC1	75	99.320	ENSSHAG00000018219	EXOSC1	100	99.320	Sarcophilus_harrisii
ENSMODG00000004213	EXOSC1	97	78.534	ENSSFOG00015016289	-	98	78.534	Scleropages_formosus
ENSMODG00000004213	EXOSC1	98	82.902	ENSSFOG00015009069	exosc1	99	82.902	Scleropages_formosus
ENSMODG00000004213	EXOSC1	98	81.771	ENSSMAG00000003721	exosc1	98	81.771	Scophthalmus_maximus
ENSMODG00000004213	EXOSC1	98	81.250	ENSSDUG00000002993	exosc1	98	81.250	Seriola_dumerili
ENSMODG00000004213	EXOSC1	98	81.250	ENSSLDG00000025181	exosc1	98	81.250	Seriola_lalandi_dorsalis
ENSMODG00000004213	EXOSC1	100	79.592	ENSSARG00000000162	EXOSC1	100	79.592	Sorex_araneus
ENSMODG00000004213	EXOSC1	99	83.077	ENSSPUG00000012263	EXOSC1	99	83.077	Sphenodon_punctatus
ENSMODG00000004213	EXOSC1	98	72.539	ENSSPAG00000016792	exosc1	82	72.539	Stegastes_partitus
ENSMODG00000004213	EXOSC1	100	91.327	ENSSSCG00000010518	EXOSC1	91	91.327	Sus_scrofa
ENSMODG00000004213	EXOSC1	98	82.902	ENSTGUG00000009692	EXOSC1	99	82.902	Taeniopygia_guttata
ENSMODG00000004213	EXOSC1	97	73.158	ENSTRUG00000007706	exosc1	98	73.158	Takifugu_rubripes
ENSMODG00000004213	EXOSC1	97	72.539	ENSTNIG00000014079	exosc1	97	72.539	Tetraodon_nigroviridis
ENSMODG00000004213	EXOSC1	100	85.714	ENSTBEG00000006011	EXOSC1	100	85.714	Tupaia_belangeri
ENSMODG00000004213	EXOSC1	94	93.514	ENSTTRG00000009887	EXOSC1	100	93.514	Tursiops_truncatus
ENSMODG00000004213	EXOSC1	100	76.531	ENSUAMG00000010266	EXOSC1	100	76.531	Ursus_americanus
ENSMODG00000004213	EXOSC1	100	76.531	ENSUMAG00000022002	EXOSC1	100	76.531	Ursus_maritimus
ENSMODG00000004213	EXOSC1	100	92.857	ENSVVUG00000023192	EXOSC1	63	92.857	Vulpes_vulpes
ENSMODG00000004213	EXOSC1	98	78.238	ENSXETG00000003434	exosc1	99	78.238	Xenopus_tropicalis
ENSMODG00000004213	EXOSC1	62	85.124	ENSXCOG00000014499	exosc1	92	85.124	Xiphophorus_couchianus
ENSMODG00000004213	EXOSC1	98	65.803	ENSXMAG00000023382	exosc1	93	65.803	Xiphophorus_maculatus