EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMODG00000004722 (Gene tree)
Gene ID: 100019863
Gene Symbol: LSM7
Alias: YNL147W
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Minus strand
Length: 9018 bases
Position: chr3:455203873-455212890
Accession: 100019863
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000005816	LSM	PF01423.22	2.9e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000005939	LSM7-201	558	-	ENSMODP00000005816	103 (aa)	XP_001372576	F6Y2R1

Gene Model

Click here to download ENSMODG00000004722's gene model file

Pathways

Pathway ID	Pathway Name	Source
mdo03018	RNA degradation	KEGG
mdo03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000004722's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMODG00000004722	LSM7	69	39.437	ENSMODG00000011528	SNRPG	83	39.437

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000004722	LSM7	100	99.029	ENSG00000130332	LSM7	100	99.029	Homo_sapiens
ENSMODG00000004722	LSM7	91	95.745	ENSAPOG00000015573	lsm7	81	95.745	Acanthochromis_polyacanthus
ENSMODG00000004722	LSM7	100	96.117	ENSAMEG00000005484	LSM7	100	96.117	Ailuropoda_melanoleuca
ENSMODG00000004722	LSM7	95	94.898	ENSACIG00000006498	lsm7	78	94.898	Amphilophus_citrinellus
ENSMODG00000004722	LSM7	99	95.098	ENSAOCG00000001077	lsm7	92	96.040	Amphiprion_ocellaris
ENSMODG00000004722	LSM7	100	96.117	ENSAPEG00000000694	lsm7	100	96.117	Amphiprion_percula
ENSMODG00000004722	LSM7	100	94.175	ENSAPEG00000024447	lsm7	92	96.040	Amphiprion_percula
ENSMODG00000004722	LSM7	100	96.117	ENSATEG00000008557	lsm7	100	96.117	Anabas_testudineus
ENSMODG00000004722	LSM7	100	90.291	ENSANAG00000022222	-	100	90.291	Aotus_nancymaae
ENSMODG00000004722	LSM7	100	99.029	ENSANAG00000037196	-	100	99.029	Aotus_nancymaae
ENSMODG00000004722	LSM7	100	95.146	ENSACLG00000021021	lsm7	100	95.146	Astatotilapia_calliptera
ENSMODG00000004722	LSM7	100	96.117	ENSAMXG00000037622	lsm7	100	96.117	Astyanax_mexicanus
ENSMODG00000004722	LSM7	100	99.029	ENSBTAG00000004521	LSM7	100	99.029	Bos_taurus
ENSMODG00000004722	LSM7	97	57.000	WBGene00003081	lsm-7	96	57.000	Caenorhabditis_elegans
ENSMODG00000004722	LSM7	54	100.000	ENSCJAG00000039713	-	68	100.000	Callithrix_jacchus
ENSMODG00000004722	LSM7	98	98.020	ENSCAFG00000019409	LSM7	98	98.020	Canis_familiaris
ENSMODG00000004722	LSM7	97	99.000	ENSCAFG00020018168	LSM7	74	99.000	Canis_lupus_dingo
ENSMODG00000004722	LSM7	100	97.087	ENSCHIG00000023663	LSM7	100	97.087	Capra_hircus
ENSMODG00000004722	LSM7	69	98.592	ENSCAPG00000014534	LSM7	100	98.592	Cavia_aperea
ENSMODG00000004722	LSM7	100	99.029	ENSCPOG00000014025	LSM7	100	99.029	Cavia_porcellus
ENSMODG00000004722	LSM7	98	99.010	ENSCCAG00000035456	LSM7	99	99.010	Cebus_capucinus
ENSMODG00000004722	LSM7	100	99.029	ENSCATG00000023543	LSM7	100	99.029	Cercocebus_atys
ENSMODG00000004722	LSM7	100	99.029	ENSCLAG00000011635	LSM7	100	99.029	Chinchilla_lanigera
ENSMODG00000004722	LSM7	100	99.029	ENSCSAG00000011599	LSM7	100	99.029	Chlorocebus_sabaeus
ENSMODG00000004722	LSM7	70	95.833	ENSCPBG00000021317	LSM7	77	95.833	Chrysemys_picta_bellii
ENSMODG00000004722	LSM7	93	80.208	ENSCING00000022134	-	97	80.208	Ciona_intestinalis
ENSMODG00000004722	LSM7	100	99.029	ENSCANG00000035525	LSM7	100	99.029	Colobus_angolensis_palliatus
ENSMODG00000004722	LSM7	87	88.889	ENSCGRG00001016005	-	92	88.889	Cricetulus_griseus_chok1gshd
ENSMODG00000004722	LSM7	100	98.058	ENSCGRG00001000807	-	100	98.058	Cricetulus_griseus_chok1gshd
ENSMODG00000004722	LSM7	98	98.020	ENSCGRG00000014355	-	97	98.020	Cricetulus_griseus_crigri
ENSMODG00000004722	LSM7	87	88.889	ENSCGRG00000006821	-	92	88.889	Cricetulus_griseus_crigri
ENSMODG00000004722	LSM7	98	96.040	ENSCSEG00000014900	lsm7	86	96.040	Cynoglossus_semilaevis
ENSMODG00000004722	LSM7	98	97.030	ENSCVAG00000021091	lsm7	94	97.030	Cyprinodon_variegatus
ENSMODG00000004722	LSM7	100	96.117	ENSDARG00000058328	lsm7	100	96.117	Danio_rerio
ENSMODG00000004722	LSM7	99	97.059	ENSDORG00000024460	Lsm7	100	97.059	Dipodomys_ordii
ENSMODG00000004722	LSM7	94	76.531	FBgn0261068	LSm7	89	76.531	Drosophila_melanogaster
ENSMODG00000004722	LSM7	98	96.040	ENSETEG00000012788	LSM7	99	96.040	Echinops_telfairi
ENSMODG00000004722	LSM7	81	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSMODG00000004722	LSM7	100	85.437	ENSEBUG00000016992	lsm7	99	85.437	Eptatretus_burgeri
ENSMODG00000004722	LSM7	100	95.146	ENSECAG00000001440	LSM7	66	95.146	Equus_caballus
ENSMODG00000004722	LSM7	100	98.058	ENSFCAG00000003445	LSM7	100	98.058	Felis_catus
ENSMODG00000004722	LSM7	98	98.020	ENSFALG00000011912	LSM7	100	98.020	Ficedula_albicollis
ENSMODG00000004722	LSM7	93	98.958	ENSFDAG00000007661	LSM7	100	98.958	Fukomys_damarensis
ENSMODG00000004722	LSM7	98	97.030	ENSFHEG00000006349	lsm7	90	97.030	Fundulus_heteroclitus
ENSMODG00000004722	LSM7	100	92.233	ENSGMOG00000013320	lsm7	100	92.233	Gadus_morhua
ENSMODG00000004722	LSM7	100	97.087	ENSGAFG00000013902	lsm7	100	97.087	Gambusia_affinis
ENSMODG00000004722	LSM7	100	93.204	ENSGACG00000010390	lsm7	100	93.204	Gasterosteus_aculeatus
ENSMODG00000004722	LSM7	100	99.029	ENSGGOG00000010172	LSM7	100	99.029	Gorilla_gorilla
ENSMODG00000004722	LSM7	100	95.146	ENSHBUG00000004616	lsm7	100	95.146	Haplochromis_burtoni
ENSMODG00000004722	LSM7	100	99.029	ENSHGLG00000010587	LSM7	100	99.029	Heterocephalus_glaber_female
ENSMODG00000004722	LSM7	100	99.029	ENSHGLG00100000852	LSM7	100	99.029	Heterocephalus_glaber_male
ENSMODG00000004722	LSM7	98	95.050	ENSHCOG00000020252	lsm7	100	95.050	Hippocampus_comes
ENSMODG00000004722	LSM7	100	96.117	ENSIPUG00000024724	lsm7	100	96.117	Ictalurus_punctatus
ENSMODG00000004722	LSM7	98	99.010	ENSSTOG00000028372	LSM7	99	99.010	Ictidomys_tridecemlineatus
ENSMODG00000004722	LSM7	97	99.000	ENSJJAG00000001936	Lsm7	97	99.000	Jaculus_jaculus
ENSMODG00000004722	LSM7	100	97.087	ENSKMAG00000022151	lsm7	100	97.087	Kryptolebias_marmoratus
ENSMODG00000004722	LSM7	100	95.146	ENSLBEG00000005203	lsm7	100	95.146	Labrus_bergylta
ENSMODG00000004722	LSM7	100	98.058	ENSLACG00000015700	LSM7	100	98.058	Latimeria_chalumnae
ENSMODG00000004722	LSM7	100	97.087	ENSLOCG00000004356	lsm7	100	97.087	Lepisosteus_oculatus
ENSMODG00000004722	LSM7	98	99.010	ENSLAFG00000029302	LSM7	98	99.010	Loxodonta_africana
ENSMODG00000004722	LSM7	100	99.029	ENSMFAG00000044572	LSM7	100	99.029	Macaca_fascicularis
ENSMODG00000004722	LSM7	100	99.029	ENSMMUG00000000452	LSM7	100	99.029	Macaca_mulatta
ENSMODG00000004722	LSM7	100	99.029	ENSMNEG00000004393	LSM7	100	99.029	Macaca_nemestrina
ENSMODG00000004722	LSM7	100	99.029	ENSMLEG00000030852	LSM7	100	99.029	Mandrillus_leucophaeus
ENSMODG00000004722	LSM7	100	95.146	ENSMAMG00000005410	lsm7	100	95.146	Mastacembelus_armatus
ENSMODG00000004722	LSM7	100	95.146	ENSMZEG00005028055	lsm7	100	95.146	Maylandia_zebra
ENSMODG00000004722	LSM7	100	99.029	ENSMGAG00000000750	LSM7	89	99.029	Meleagris_gallopavo
ENSMODG00000004722	LSM7	100	98.058	ENSMAUG00000009276	Lsm7	100	98.058	Mesocricetus_auratus
ENSMODG00000004722	LSM7	100	98.058	ENSMICG00000009988	-	100	98.058	Microcebus_murinus
ENSMODG00000004722	LSM7	100	99.029	ENSMICG00000028619	-	100	99.029	Microcebus_murinus
ENSMODG00000004722	LSM7	100	98.058	ENSMOCG00000016925	Lsm7	100	98.058	Microtus_ochrogaster
ENSMODG00000004722	LSM7	100	96.117	ENSMMOG00000019645	lsm7	98	96.117	Mola_mola
ENSMODG00000004722	LSM7	100	95.146	ENSMALG00000014511	lsm7	79	95.146	Monopterus_albus
ENSMODG00000004722	LSM7	99	98.039	MGP_CAROLIEiJ_G0015607	Lsm7	99	98.039	Mus_caroli
ENSMODG00000004722	LSM7	99	98.039	ENSMUSG00000035215	Lsm7	99	98.039	Mus_musculus
ENSMODG00000004722	LSM7	99	98.039	MGP_PahariEiJ_G0031020	Lsm7	99	98.039	Mus_pahari
ENSMODG00000004722	LSM7	99	98.039	MGP_SPRETEiJ_G0016425	Lsm7	99	98.039	Mus_spretus
ENSMODG00000004722	LSM7	100	96.117	ENSMLUG00000013097	-	100	96.117	Myotis_lucifugus
ENSMODG00000004722	LSM7	99	93.137	ENSMLUG00000024002	-	94	93.137	Myotis_lucifugus
ENSMODG00000004722	LSM7	100	97.087	ENSNGAG00000021637	Lsm7	100	97.087	Nannospalax_galili
ENSMODG00000004722	LSM7	98	95.050	ENSNBRG00000015770	lsm7	87	95.050	Neolamprologus_brichardi
ENSMODG00000004722	LSM7	91	95.745	ENSNBRG00000001237	-	82	93.204	Neolamprologus_brichardi
ENSMODG00000004722	LSM7	100	99.029	ENSNLEG00000002265	LSM7	100	99.029	Nomascus_leucogenys
ENSMODG00000004722	LSM7	100	78.641	ENSODEG00000008190	-	100	78.641	Octodon_degus
ENSMODG00000004722	LSM7	100	99.029	ENSODEG00000013590	-	100	99.029	Octodon_degus
ENSMODG00000004722	LSM7	100	92.233	ENSODEG00000018769	-	100	92.233	Octodon_degus
ENSMODG00000004722	LSM7	100	95.146	ENSONIG00000001801	lsm7	89	95.146	Oreochromis_niloticus
ENSMODG00000004722	LSM7	100	96.117	ENSORLG00000023951	lsm7	100	96.117	Oryzias_latipes
ENSMODG00000004722	LSM7	100	96.117	ENSORLG00020022226	lsm7	100	96.117	Oryzias_latipes_hni
ENSMODG00000004722	LSM7	100	94.175	ENSORLG00015020044	lsm7	94	96.040	Oryzias_latipes_hsok
ENSMODG00000004722	LSM7	100	96.117	ENSOMEG00000012806	lsm7	100	96.117	Oryzias_melastigma
ENSMODG00000004722	LSM7	100	87.379	ENSOGAG00000024373	-	100	87.379	Otolemur_garnettii
ENSMODG00000004722	LSM7	98	97.030	ENSOGAG00000000144	-	99	97.030	Otolemur_garnettii
ENSMODG00000004722	LSM7	100	97.087	ENSOARG00000014013	LSM7	100	97.087	Ovis_aries
ENSMODG00000004722	LSM7	100	99.029	ENSPPAG00000026500	LSM7	100	99.029	Pan_paniscus
ENSMODG00000004722	LSM7	100	98.058	ENSPPRG00000008624	LSM7	100	98.058	Panthera_pardus
ENSMODG00000004722	LSM7	98	98.020	ENSPTIG00000016252	LSM7	98	98.020	Panthera_tigris_altaica
ENSMODG00000004722	LSM7	100	99.029	ENSPTRG00000010233	LSM7	100	99.029	Pan_troglodytes
ENSMODG00000004722	LSM7	100	99.029	ENSPANG00000020668	LSM7	100	99.029	Papio_anubis
ENSMODG00000004722	LSM7	100	98.058	ENSPKIG00000011325	lsm7	100	98.058	Paramormyrops_kingsleyae
ENSMODG00000004722	LSM7	98	99.010	ENSPSIG00000017149	LSM7	89	99.010	Pelodiscus_sinensis
ENSMODG00000004722	LSM7	100	96.117	ENSPMGG00000006498	lsm7	100	96.117	Periophthalmus_magnuspinnatus
ENSMODG00000004722	LSM7	100	100.000	ENSPCIG00000030454	LSM7	100	100.000	Phascolarctos_cinereus
ENSMODG00000004722	LSM7	100	94.175	ENSPFOG00000012467	lsm7	91	94.175	Poecilia_formosa
ENSMODG00000004722	LSM7	100	94.175	ENSPLAG00000000252	lsm7	94	95.098	Poecilia_latipinna
ENSMODG00000004722	LSM7	100	94.175	ENSPMEG00000000587	lsm7	94	95.098	Poecilia_mexicana
ENSMODG00000004722	LSM7	78	76.543	ENSPREG00000016718	lsm7	65	76.543	Poecilia_reticulata
ENSMODG00000004722	LSM7	71	97.260	ENSPPYG00000009348	-	50	97.260	Pongo_abelii
ENSMODG00000004722	LSM7	100	99.029	ENSPCOG00000017177	LSM7	100	99.029	Propithecus_coquereli
ENSMODG00000004722	LSM7	100	95.146	ENSPNYG00000006938	lsm7	100	95.146	Pundamilia_nyererei
ENSMODG00000004722	LSM7	100	96.117	ENSPNAG00000010141	lsm7	100	96.117	Pygocentrus_nattereri
ENSMODG00000004722	LSM7	99	99.020	ENSRNOG00000019552	Lsm7	99	99.020	Rattus_norvegicus
ENSMODG00000004722	LSM7	100	99.029	ENSRBIG00000035978	LSM7	100	99.029	Rhinopithecus_bieti
ENSMODG00000004722	LSM7	100	99.029	ENSRROG00000034044	LSM7	100	99.029	Rhinopithecus_roxellana
ENSMODG00000004722	LSM7	83	48.315	YNL147W	-	77	48.315	Saccharomyces_cerevisiae
ENSMODG00000004722	LSM7	100	99.029	ENSSBOG00000034899	LSM7	100	99.029	Saimiri_boliviensis_boliviensis
ENSMODG00000004722	LSM7	100	96.117	ENSSFOG00015006728	lsm7	100	96.117	Scleropages_formosus
ENSMODG00000004722	LSM7	100	94.175	ENSSMAG00000004195	lsm7	93	96.040	Scophthalmus_maximus
ENSMODG00000004722	LSM7	100	96.117	ENSSDUG00000001863	lsm7	100	96.117	Seriola_dumerili
ENSMODG00000004722	LSM7	100	96.117	ENSSLDG00000016339	lsm7	100	96.117	Seriola_lalandi_dorsalis
ENSMODG00000004722	LSM7	100	96.117	ENSSPAG00000015221	lsm7	100	96.117	Stegastes_partitus
ENSMODG00000004722	LSM7	98	99.010	ENSSSCG00000013463	LSM7	99	99.010	Sus_scrofa
ENSMODG00000004722	LSM7	98	98.020	ENSTGUG00000000067	LSM7	100	98.020	Taeniopygia_guttata
ENSMODG00000004722	LSM7	100	96.117	ENSTRUG00000022913	lsm7	100	96.117	Takifugu_rubripes
ENSMODG00000004722	LSM7	100	96.117	ENSTNIG00000015525	lsm7	100	96.117	Tetraodon_nigroviridis
ENSMODG00000004722	LSM7	68	85.714	ENSTBEG00000016602	LSM7	100	85.714	Tupaia_belangeri
ENSMODG00000004722	LSM7	100	96.117	ENSUAMG00000000912	LSM7	86	96.117	Ursus_americanus
ENSMODG00000004722	LSM7	97	99.000	ENSUMAG00000006556	LSM7	78	99.000	Ursus_maritimus
ENSMODG00000004722	LSM7	69	97.183	ENSVVUG00000002640	LSM7	65	97.183	Vulpes_vulpes
ENSMODG00000004722	LSM7	98	96.040	ENSXETG00000022166	lsm7	100	96.040	Xenopus_tropicalis
ENSMODG00000004722	LSM7	99	96.078	ENSXCOG00000002572	lsm7	100	96.078	Xiphophorus_couchianus
ENSMODG00000004722	LSM7	100	97.087	ENSXMAG00000018630	lsm7	100	97.087	Xiphophorus_maculatus