EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMODG00000006561 (Gene tree)
Gene ID: 100023145
Gene Symbol: POP1
Alias: -
Full Name: POP1 homolog%2C ribonuclease P/MRP subunit
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Plus strand
Length: 34981 bases
Position: chr3:362667857-362702837
Accession: 100023145
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000008143	POP1	PF06978.11	4e-38	1	2
ENSMODP00000008143	POP1	PF06978.11	4e-38	2	2
ENSMODP00000008143	POPLD	PF08170.12	3.6e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000008307	POP1-201	6393	XM_001369047	ENSMODP00000008143	1025 (aa)	XP_001369084	F7BUK3

Gene Model

Click here to download ENSMODG00000006561's gene model file

Pathways

Pathway ID	Pathway Name	Source
mdo03008	Ribosome biogenesis in eukaryotes	KEGG
mdo03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000006561's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000006561	POP1	100	69.729	ENSG00000104356	POP1	100	71.429	Homo_sapiens
ENSMODG00000006561	POP1	100	46.660	ENSAPOG00000008198	pop1	100	46.472	Acanthochromis_polyacanthus
ENSMODG00000006561	POP1	99	66.923	ENSAMEG00000000556	POP1	99	66.923	Ailuropoda_melanoleuca
ENSMODG00000006561	POP1	89	48.305	ENSACIG00000004169	POP1	93	48.305	Amphilophus_citrinellus
ENSMODG00000006561	POP1	100	45.872	ENSAOCG00000010991	pop1	100	45.966	Amphiprion_ocellaris
ENSMODG00000006561	POP1	91	45.473	ENSAPEG00000007607	pop1	97	46.193	Amphiprion_percula
ENSMODG00000006561	POP1	100	46.723	ENSATEG00000024814	POP1	100	46.816	Anabas_testudineus
ENSMODG00000006561	POP1	92	62.368	ENSAPLG00000014418	POP1	100	62.262	Anas_platyrhynchos
ENSMODG00000006561	POP1	100	54.928	ENSACAG00000016083	POP1	100	55.261	Anolis_carolinensis
ENSMODG00000006561	POP1	88	75.510	ENSANAG00000026360	POP1	99	75.510	Aotus_nancymaae
ENSMODG00000006561	POP1	92	51.967	ENSACLG00000010951	pop1	100	45.943	Astatotilapia_calliptera
ENSMODG00000006561	POP1	99	45.188	ENSAMXG00000014483	POP1	99	43.171	Astyanax_mexicanus
ENSMODG00000006561	POP1	100	67.345	ENSBTAG00000012596	POP1	100	67.602	Bos_taurus
ENSMODG00000006561	POP1	100	69.149	ENSCJAG00000015567	POP1	100	69.149	Callithrix_jacchus
ENSMODG00000006561	POP1	100	68.054	ENSCAFG00000000469	POP1	100	67.957	Canis_familiaris
ENSMODG00000006561	POP1	100	68.441	ENSCAFG00020026765	POP1	100	68.345	Canis_lupus_dingo
ENSMODG00000006561	POP1	100	67.636	ENSCHIG00000017066	POP1	100	67.892	Capra_hircus
ENSMODG00000006561	POP1	100	68.279	ENSTSYG00000003097	POP1	100	68.038	Carlito_syrichta
ENSMODG00000006561	POP1	100	63.311	ENSCAPG00000007251	POP1	100	63.698	Cavia_aperea
ENSMODG00000006561	POP1	100	66.148	ENSCPOG00000002901	POP1	100	66.537	Cavia_porcellus
ENSMODG00000006561	POP1	100	68.859	ENSCCAG00000018939	POP1	100	69.052	Cebus_capucinus
ENSMODG00000006561	POP1	100	68.956	ENSCATG00000040916	POP1	100	69.409	Cercocebus_atys
ENSMODG00000006561	POP1	100	67.086	ENSCLAG00000007208	POP1	97	66.505	Chinchilla_lanigera
ENSMODG00000006561	POP1	90	70.626	ENSCSAG00000012340	POP1	99	70.215	Chlorocebus_sabaeus
ENSMODG00000006561	POP1	95	65.178	ENSCHOG00000011432	POP1	100	65.990	Choloepus_hoffmanni
ENSMODG00000006561	POP1	100	65.891	ENSCPBG00000006373	POP1	100	66.473	Chrysemys_picta_bellii
ENSMODG00000006561	POP1	81	39.759	ENSCING00000008323	-	89	36.140	Ciona_intestinalis
ENSMODG00000006561	POP1	100	69.149	ENSCANG00000001647	POP1	100	69.603	Colobus_angolensis_palliatus
ENSMODG00000006561	POP1	100	63.330	ENSCGRG00001017308	Pop1	100	64.341	Cricetulus_griseus_chok1gshd
ENSMODG00000006561	POP1	100	59.056	ENSCGRG00000010824	Pop1	100	60.039	Cricetulus_griseus_crigri
ENSMODG00000006561	POP1	100	46.660	ENSCSEG00000008737	POP1	100	46.371	Cynoglossus_semilaevis
ENSMODG00000006561	POP1	100	46.629	ENSCVAG00000022248	pop1	100	46.629	Cyprinodon_variegatus
ENSMODG00000006561	POP1	100	64.925	ENSDNOG00000019974	POP1	100	64.925	Dasypus_novemcinctus
ENSMODG00000006561	POP1	100	58.447	ENSDORG00000015384	Pop1	100	58.366	Dipodomys_ordii
ENSMODG00000006561	POP1	77	34.380	FBgn0026702	l(1)G0045	71	33.901	Drosophila_melanogaster
ENSMODG00000006561	POP1	89	62.087	ENSETEG00000007839	POP1	88	62.087	Echinops_telfairi
ENSMODG00000006561	POP1	100	68.538	ENSEASG00005003189	POP1	98	68.829	Equus_asinus_asinus
ENSMODG00000006561	POP1	100	68.538	ENSECAG00000024236	POP1	100	68.538	Equus_caballus
ENSMODG00000006561	POP1	67	64.865	ENSEEUG00000003050	-	70	64.865	Erinaceus_europaeus
ENSMODG00000006561	POP1	99	46.724	ENSELUG00000003526	pop1	99	46.351	Esox_lucius
ENSMODG00000006561	POP1	100	67.795	ENSFCAG00000002168	POP1	100	68.569	Felis_catus
ENSMODG00000006561	POP1	100	60.308	ENSFALG00000005711	POP1	100	60.308	Ficedula_albicollis
ENSMODG00000006561	POP1	100	67.471	ENSFDAG00000017068	POP1	100	66.892	Fukomys_damarensis
ENSMODG00000006561	POP1	92	50.475	ENSFHEG00000019518	pop1	100	46.066	Fundulus_heteroclitus
ENSMODG00000006561	POP1	93	45.628	ENSGMOG00000000659	POP1	97	46.162	Gadus_morhua
ENSMODG00000006561	POP1	100	45.845	ENSGAFG00000019770	POP1	100	45.507	Gambusia_affinis
ENSMODG00000006561	POP1	100	45.377	ENSGACG00000003499	pop1	100	45.283	Gasterosteus_aculeatus
ENSMODG00000006561	POP1	100	66.052	ENSGAGG00000011737	POP1	98	65.470	Gopherus_agassizii
ENSMODG00000006561	POP1	100	69.372	ENSGGOG00000003176	POP1	100	69.826	Gorilla_gorilla
ENSMODG00000006561	POP1	100	46.509	ENSHBUG00000021583	pop1	100	45.943	Haplochromis_burtoni
ENSMODG00000006561	POP1	100	66.314	ENSHGLG00000006029	POP1	100	65.640	Heterocephalus_glaber_female
ENSMODG00000006561	POP1	100	66.314	ENSHGLG00100016879	POP1	100	65.640	Heterocephalus_glaber_male
ENSMODG00000006561	POP1	82	55.763	ENSHCOG00000013888	pop1	90	55.763	Hippocampus_comes
ENSMODG00000006561	POP1	99	43.078	ENSIPUG00000018336	pop1	92	59.140	Ictalurus_punctatus
ENSMODG00000006561	POP1	100	68.023	ENSSTOG00000011455	POP1	97	68.023	Ictidomys_tridecemlineatus
ENSMODG00000006561	POP1	100	64.826	ENSJJAG00000013325	Pop1	100	64.050	Jaculus_jaculus
ENSMODG00000006561	POP1	100	46.021	ENSKMAG00000001346	POP1	100	46.213	Kryptolebias_marmoratus
ENSMODG00000006561	POP1	80	54.590	ENSLBEG00000024457	POP1	90	54.327	Labrus_bergylta
ENSMODG00000006561	POP1	92	56.167	ENSLACG00000012498	POP1	99	56.167	Latimeria_chalumnae
ENSMODG00000006561	POP1	100	50.334	ENSLOCG00000009817	POP1	100	51.192	Lepisosteus_oculatus
ENSMODG00000006561	POP1	100	68.085	ENSLAFG00000010770	POP1	100	69.305	Loxodonta_africana
ENSMODG00000006561	POP1	100	69.052	ENSMFAG00000000347	POP1	100	69.603	Macaca_fascicularis
ENSMODG00000006561	POP1	100	68.859	ENSMNEG00000036870	POP1	100	69.409	Macaca_nemestrina
ENSMODG00000006561	POP1	100	69.052	ENSMLEG00000034986	POP1	100	69.506	Mandrillus_leucophaeus
ENSMODG00000006561	POP1	100	47.358	ENSMAMG00000004040	pop1	100	47.547	Mastacembelus_armatus
ENSMODG00000006561	POP1	100	46.415	ENSMZEG00005025448	pop1	100	45.943	Maylandia_zebra
ENSMODG00000006561	POP1	100	58.208	ENSMGAG00000012167	POP1	100	58.208	Meleagris_gallopavo
ENSMODG00000006561	POP1	100	64.113	ENSMAUG00000017537	Pop1	100	64.113	Mesocricetus_auratus
ENSMODG00000006561	POP1	100	68.665	ENSMICG00000004361	POP1	100	68.726	Microcebus_murinus
ENSMODG00000006561	POP1	100	63.795	ENSMOCG00000006356	Pop1	100	64.341	Microtus_ochrogaster
ENSMODG00000006561	POP1	93	44.615	ENSMMOG00000018242	pop1	98	44.615	Mola_mola
ENSMODG00000006561	POP1	100	48.243	ENSMALG00000012621	POP1	100	47.958	Monopterus_albus
ENSMODG00000006561	POP1	100	63.873	MGP_CAROLIEiJ_G0019726	Pop1	100	63.198	Mus_caroli
ENSMODG00000006561	POP1	100	63.138	ENSMUSG00000022325	Pop1	100	63.198	Mus_musculus
ENSMODG00000006561	POP1	100	63.715	MGP_PahariEiJ_G0019735	Pop1	100	63.041	Mus_pahari
ENSMODG00000006561	POP1	100	63.426	MGP_SPRETEiJ_G0020622	Pop1	100	62.753	Mus_spretus
ENSMODG00000006561	POP1	100	67.502	ENSMPUG00000015250	POP1	100	67.502	Mustela_putorius_furo
ENSMODG00000006561	POP1	100	64.251	ENSMLUG00000010204	POP1	100	64.251	Myotis_lucifugus
ENSMODG00000006561	POP1	100	66.279	ENSNGAG00000001582	Pop1	100	66.246	Nannospalax_galili
ENSMODG00000006561	POP1	88	47.002	ENSNBRG00000002356	pop1	94	46.984	Neolamprologus_brichardi
ENSMODG00000006561	POP1	100	68.472	ENSNLEG00000002541	POP1	100	69.246	Nomascus_leucogenys
ENSMODG00000006561	POP1	95	75.844	ENSMEUG00000003118	POP1	99	75.844	Notamacropus_eugenii
ENSMODG00000006561	POP1	100	66.957	ENSOPRG00000007667	POP1	100	66.957	Ochotona_princeps
ENSMODG00000006561	POP1	100	66.054	ENSODEG00000003984	POP1	100	66.570	Octodon_degus
ENSMODG00000006561	POP1	100	47.097	ENSONIG00000016445	pop1	100	47.274	Oreochromis_niloticus
ENSMODG00000006561	POP1	59	73.373	ENSOANG00000001278	-	94	73.373	Ornithorhynchus_anatinus
ENSMODG00000006561	POP1	100	66.379	ENSOCUG00000017400	POP1	100	66.379	Oryctolagus_cuniculus
ENSMODG00000006561	POP1	100	46.242	ENSORLG00000002839	pop1	100	46.476	Oryzias_latipes
ENSMODG00000006561	POP1	89	48.250	ENSORLG00020022450	POP1	96	48.574	Oryzias_latipes_hni
ENSMODG00000006561	POP1	100	46.242	ENSORLG00015012746	POP1	100	46.609	Oryzias_latipes_hsok
ENSMODG00000006561	POP1	100	46.616	ENSOMEG00000006915	pop1	99	47.738	Oryzias_melastigma
ENSMODG00000006561	POP1	100	68.441	ENSOGAG00000001466	POP1	100	69.052	Otolemur_garnettii
ENSMODG00000006561	POP1	100	69.826	ENSPPAG00000018410	POP1	100	70.019	Pan_paniscus
ENSMODG00000006561	POP1	100	67.729	ENSPPRG00000005002	POP1	100	68.309	Panthera_pardus
ENSMODG00000006561	POP1	100	67.826	ENSPTIG00000016527	POP1	100	68.599	Panthera_tigris_altaica
ENSMODG00000006561	POP1	100	69.758	ENSPTRG00000020458	POP1	100	69.952	Pan_troglodytes
ENSMODG00000006561	POP1	100	68.859	ENSPANG00000009704	POP1	100	69.409	Papio_anubis
ENSMODG00000006561	POP1	99	48.325	ENSPKIG00000016325	POP1	99	48.615	Paramormyrops_kingsleyae
ENSMODG00000006561	POP1	100	63.531	ENSPSIG00000012343	POP1	100	63.434	Pelodiscus_sinensis
ENSMODG00000006561	POP1	90	49.160	ENSPMGG00000022253	POP1	95	49.265	Periophthalmus_magnuspinnatus
ENSMODG00000006561	POP1	99	63.886	ENSPEMG00000023633	Pop1	100	63.886	Peromyscus_maniculatus_bairdii
ENSMODG00000006561	POP1	89	41.973	ENSPMAG00000003209	POP1	100	42.316	Petromyzon_marinus
ENSMODG00000006561	POP1	100	84.600	ENSPCIG00000012216	POP1	100	84.211	Phascolarctos_cinereus
ENSMODG00000006561	POP1	100	46.073	ENSPFOG00000012490	POP1	100	45.733	Poecilia_formosa
ENSMODG00000006561	POP1	100	46.073	ENSPLAG00000004646	POP1	100	45.733	Poecilia_latipinna
ENSMODG00000006561	POP1	100	46.029	ENSPMEG00000019592	POP1	100	45.594	Poecilia_mexicana
ENSMODG00000006561	POP1	100	46.065	ENSPREG00000020951	POP1	100	45.629	Poecilia_reticulata
ENSMODG00000006561	POP1	100	69.788	ENSPPYG00000018777	POP1	100	69.981	Pongo_abelii
ENSMODG00000006561	POP1	100	63.504	ENSPCAG00000016662	POP1	100	62.730	Procavia_capensis
ENSMODG00000006561	POP1	100	68.852	ENSPCOG00000019420	POP1	100	68.852	Propithecus_coquereli
ENSMODG00000006561	POP1	100	67.372	ENSPVAG00000014468	POP1	100	67.534	Pteropus_vampyrus
ENSMODG00000006561	POP1	88	47.747	ENSPNYG00000004476	pop1	95	47.452	Pundamilia_nyererei
ENSMODG00000006561	POP1	99	44.566	ENSPNAG00000000265	pop1	91	69.231	Pygocentrus_nattereri
ENSMODG00000006561	POP1	100	63.822	ENSRNOG00000005243	Pop1	100	63.822	Rattus_norvegicus
ENSMODG00000006561	POP1	100	69.342	ENSRBIG00000007996	POP1	100	69.797	Rhinopithecus_bieti
ENSMODG00000006561	POP1	100	69.342	ENSRROG00000012334	POP1	100	69.797	Rhinopithecus_roxellana
ENSMODG00000006561	POP1	99	70.029	ENSSBOG00000020830	POP1	100	70.029	Saimiri_boliviensis_boliviensis
ENSMODG00000006561	POP1	100	85.423	ENSSHAG00000000296	POP1	100	85.423	Sarcophilus_harrisii
ENSMODG00000006561	POP1	100	46.991	ENSSFOG00015007429	pop1	99	46.724	Scleropages_formosus
ENSMODG00000006561	POP1	85	53.485	ENSSMAG00000010467	POP1	99	47.955	Scophthalmus_maximus
ENSMODG00000006561	POP1	100	47.186	ENSSDUG00000007817	POP1	100	47.092	Seriola_dumerili
ENSMODG00000006561	POP1	100	47.186	ENSSLDG00000012565	POP1	100	47.092	Seriola_lalandi_dorsalis
ENSMODG00000006561	POP1	100	59.170	ENSSPUG00000003550	-	100	59.266	Sphenodon_punctatus
ENSMODG00000006561	POP1	89	49.136	ENSSPAG00000014955	pop1	94	49.302	Stegastes_partitus
ENSMODG00000006561	POP1	100	66.021	ENSSSCG00000006078	POP1	100	65.863	Sus_scrofa
ENSMODG00000006561	POP1	91	56.013	ENSTGUG00000012011	-	100	56.435	Taeniopygia_guttata
ENSMODG00000006561	POP1	89	47.676	ENSTRUG00000010856	pop1	92	47.676	Takifugu_rubripes
ENSMODG00000006561	POP1	91	48.532	ENSTNIG00000013297	pop1	98	48.637	Tetraodon_nigroviridis
ENSMODG00000006561	POP1	95	65.213	ENSTBEG00000014214	POP1	100	64.706	Tupaia_belangeri
ENSMODG00000006561	POP1	100	64.565	ENSTTRG00000016071	POP1	100	65.121	Tursiops_truncatus
ENSMODG00000006561	POP1	99	66.145	ENSUAMG00000017309	POP1	99	66.145	Ursus_americanus
ENSMODG00000006561	POP1	99	66.859	ENSUMAG00000016952	POP1	99	71.429	Ursus_maritimus
ENSMODG00000006561	POP1	82	74.212	ENSVPAG00000008278	POP1	82	74.212	Vicugna_pacos
ENSMODG00000006561	POP1	100	68.635	ENSVVUG00000010994	POP1	100	68.538	Vulpes_vulpes
ENSMODG00000006561	POP1	100	41.683	ENSXCOG00000017043	POP1	100	41.491	Xiphophorus_couchianus
ENSMODG00000006561	POP1	100	45.629	ENSXMAG00000002472	POP1	100	45.437	Xiphophorus_maculatus