EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMODG00000007009 (Gene tree)
Gene ID: 100014728
Gene Symbol: -
Alias: -
Full Name: RNA polymerase II subunit A
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Minus strand
Length: 32538 bases
Position: chr2:255132168-255164705
Accession: 100014728
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000008691	RNA_pol_Rpb1_5	PF04998.17	5.6e-101	1	1
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	1	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	2	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	3	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	4	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	5	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	6	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	7	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	8	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	9	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	10	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	11	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	12	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	13	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	14	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	15	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	16	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	17	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	18	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	19	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	20	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	21	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	22	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	23	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	24	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	25	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	26	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	27	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	28	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	29	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	30	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	31	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	32	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	33	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	34	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	35	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	36	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	37	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	38	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	39	40
ENSMODP00000008691	RNA_pol_Rpb1_R	PF05001.13	7.6e-27	40	40
ENSMODP00000008691	RNA_pol_Rpb1_4	PF05000.17	3.3e-38	1	1
ENSMODP00000008691	RNA_pol_Rpb1_2	PF00623.20	1.1e-74	1	1
ENSMODP00000008691	RNA_pol_Rpb1_3	PF04983.18	1.1e-49	1	1
ENSMODP00000008691	RNA_pol_Rpb1_1	PF04997.12	1.4e-108	1	1
ENSMODP00000008691	RNA_pol_Rpb1_7	PF04990.12	1.9e-54	1	1
ENSMODP00000008691	RNA_pol_Rpb1_6	PF04992.14	4e-67	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000008863	-	8768	-	ENSMODP00000008691	1970 (aa)	XP_001364837	F6XTX6

Gene Model

Click here to download ENSMODG00000007009's gene model file

Pathways

Pathway ID	Pathway Name	Source
mdo03020	RNA polymerase	KEGG
mdo05016	Huntington disease	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000007009's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMODG00000007009	-	56	34.906	ENSMODG00000009335	POLR1A	66	34.906
ENSMODG00000007009	-	66	39.030	ENSMODG00000001036	POLR3A	91	38.546

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000007009	-	82	94.172	ENSAPOG00000006552	polr2a	91	94.165	Acanthochromis_polyacanthus
ENSMODG00000007009	-	100	99.392	ENSAMEG00000016265	-	100	99.392	Ailuropoda_melanoleuca
ENSMODG00000007009	-	82	92.126	ENSACIG00000015982	polr2a	81	92.117	Amphilophus_citrinellus
ENSMODG00000007009	-	97	92.126	ENSAOCG00000004255	polr2a	96	92.117	Amphiprion_ocellaris
ENSMODG00000007009	-	82	94.296	ENSAPEG00000012623	polr2a	82	94.289	Amphiprion_percula
ENSMODG00000007009	-	82	94.110	ENSATEG00000019644	polr2a	82	94.103	Anabas_testudineus
ENSMODG00000007009	-	100	98.426	ENSACAG00000014561	POLR2A	100	98.426	Anolis_carolinensis
ENSMODG00000007009	-	100	99.543	ENSANAG00000020093	-	100	99.543	Aotus_nancymaae
ENSMODG00000007009	-	82	93.924	ENSACLG00000006735	polr2a	82	93.917	Astatotilapia_calliptera
ENSMODG00000007009	-	82	94.544	ENSAMXG00000020046	polr2a	82	94.538	Astyanax_mexicanus
ENSMODG00000007009	-	100	99.492	ENSBTAG00000046765	POLR2A	100	99.492	Bos_taurus
ENSMODG00000007009	-	94	69.840	WBGene00000123	ama-1	99	72.727	Caenorhabditis_elegans
ENSMODG00000007009	-	100	99.137	ENSCAFG00000016532	POLR2A	100	99.273	Canis_familiaris
ENSMODG00000007009	-	100	98.681	ENSCAFG00020007929	-	100	98.681	Canis_lupus_dingo
ENSMODG00000007009	-	100	99.492	ENSCHIG00000027173	-	100	99.492	Capra_hircus
ENSMODG00000007009	-	100	97.107	ENSTSYG00000012803	-	100	97.614	Carlito_syrichta
ENSMODG00000007009	-	98	95.164	ENSCAPG00000001882	-	98	98.037	Cavia_aperea
ENSMODG00000007009	-	100	95.246	ENSCPOG00000014812	-	98	98.075	Cavia_porcellus
ENSMODG00000007009	-	100	99.543	ENSCCAG00000020938	-	100	99.543	Cebus_capucinus
ENSMODG00000007009	-	100	99.543	ENSCATG00000013680	-	100	99.543	Cercocebus_atys
ENSMODG00000007009	-	100	99.391	ENSCLAG00000012196	-	100	99.391	Chinchilla_lanigera
ENSMODG00000007009	-	82	90.253	ENSCSAG00000011644	-	82	90.253	Chlorocebus_sabaeus
ENSMODG00000007009	-	100	94.112	ENSCPBG00000012697	POLR2A	100	94.112	Chrysemys_picta_bellii
ENSMODG00000007009	-	99	76.367	ENSCING00000007884	-	99	76.627	Ciona_intestinalis
ENSMODG00000007009	-	95	83.333	ENSCSAVG00000008334	-	99	83.871	Ciona_savignyi
ENSMODG00000007009	-	100	98.883	ENSCANG00000010622	-	100	98.883	Colobus_angolensis_palliatus
ENSMODG00000007009	-	100	93.907	ENSCGRG00001003538	Polr2a	100	94.209	Cricetulus_griseus_chok1gshd
ENSMODG00000007009	-	96	95.021	ENSCGRG00000012105	Polr2a	95	95.521	Cricetulus_griseus_crigri
ENSMODG00000007009	-	82	93.676	ENSCSEG00000002635	polr2a	82	93.669	Cynoglossus_semilaevis
ENSMODG00000007009	-	82	94.420	ENSCVAG00000005156	polr2a	82	94.413	Cyprinodon_variegatus
ENSMODG00000007009	-	82	94.300	ENSDARG00000099966	polr2a	82	94.293	Danio_rerio
ENSMODG00000007009	-	100	96.650	ENSDNOG00000016482	-	100	96.650	Dasypus_novemcinctus
ENSMODG00000007009	-	100	99.543	ENSDORG00000008667	Polr2a	100	99.543	Dipodomys_ordii
ENSMODG00000007009	-	99	69.942	FBgn0003277	RpII215	99	74.766	Drosophila_melanogaster
ENSMODG00000007009	-	94	87.820	ENSETEG00000002540	-	94	84.449	Echinops_telfairi
ENSMODG00000007009	-	81	87.960	ENSEBUG00000013967	polr2a	82	87.368	Eptatretus_burgeri
ENSMODG00000007009	-	82	97.393	ENSEASG00005019114	-	100	96.650	Equus_asinus_asinus
ENSMODG00000007009	-	100	99.492	ENSECAG00000018485	POLR2A	100	99.492	Equus_caballus
ENSMODG00000007009	-	87	99.266	ENSEEUG00000001154	-	95	99.266	Erinaceus_europaeus
ENSMODG00000007009	-	89	90.142	ENSELUG00000014284	polr2a	84	90.685	Esox_lucius
ENSMODG00000007009	-	100	99.492	ENSFDAG00000008287	-	100	99.492	Fukomys_damarensis
ENSMODG00000007009	-	85	94.420	ENSFHEG00000001768	polr2a	98	94.413	Fundulus_heteroclitus
ENSMODG00000007009	-	99	90.241	ENSGMOG00000007725	polr2a	100	100.000	Gadus_morhua
ENSMODG00000007009	-	98	94.366	ENSGAFG00000005389	polr2a	99	92.117	Gambusia_affinis
ENSMODG00000007009	-	99	90.508	ENSGACG00000019366	polr2a	100	88.012	Gasterosteus_aculeatus
ENSMODG00000007009	-	100	97.720	ENSGGOG00000014800	-	100	97.720	Gorilla_gorilla
ENSMODG00000007009	-	85	93.924	ENSHBUG00000018937	polr2a	99	93.917	Haplochromis_burtoni
ENSMODG00000007009	-	100	99.492	ENSHGLG00000012381	POLR2A	100	99.492	Heterocephalus_glaber_female
ENSMODG00000007009	-	100	99.492	ENSHGLG00100014843	POLR2A	100	99.492	Heterocephalus_glaber_male
ENSMODG00000007009	-	82	93.862	ENSHCOG00000011874	polr2a	82	93.855	Hippocampus_comes
ENSMODG00000007009	-	82	94.110	ENSIPUG00000002613	Polr2a	82	94.103	Ictalurus_punctatus
ENSMODG00000007009	-	100	99.543	ENSSTOG00000001304	-	100	99.543	Ictidomys_tridecemlineatus
ENSMODG00000007009	-	100	99.442	ENSJJAG00000013049	Polr2a	100	99.442	Jaculus_jaculus
ENSMODG00000007009	-	80	84.978	ENSKMAG00000016343	polr2a	85	85.355	Kryptolebias_marmoratus
ENSMODG00000007009	-	82	94.048	ENSLBEG00000027652	polr2a	82	94.041	Labrus_bergylta
ENSMODG00000007009	-	80	87.034	ENSLACG00000012071	POLR2A	81	87.089	Latimeria_chalumnae
ENSMODG00000007009	-	91	94.714	ENSLOCG00000013863	polr2a	99	94.410	Lepisosteus_oculatus
ENSMODG00000007009	-	100	99.492	ENSLAFG00000008626	-	100	99.492	Loxodonta_africana
ENSMODG00000007009	-	50	97.855	ENSMFAG00000007042	-	99	97.855	Macaca_fascicularis
ENSMODG00000007009	-	100	99.543	ENSMMUG00000023620	-	100	99.543	Macaca_mulatta
ENSMODG00000007009	-	100	96.409	ENSMNEG00000040407	-	100	96.915	Macaca_nemestrina
ENSMODG00000007009	-	99	94.617	ENSMLEG00000030263	-	99	97.855	Mandrillus_leucophaeus
ENSMODG00000007009	-	82	94.110	ENSMAMG00000003351	polr2a	82	94.103	Mastacembelus_armatus
ENSMODG00000007009	-	82	93.924	ENSMZEG00005021429	polr2a	82	93.917	Maylandia_zebra
ENSMODG00000007009	-	50	99.286	ENSMAUG00000021055	-	99	99.286	Mesocricetus_auratus
ENSMODG00000007009	-	100	99.442	ENSMICG00000013372	-	100	99.442	Microcebus_murinus
ENSMODG00000007009	-	100	92.825	ENSMOCG00000018279	Polr2a	100	92.981	Microtus_ochrogaster
ENSMODG00000007009	-	87	93.614	ENSMMOG00000012515	polr2a	95	93.606	Mola_mola
ENSMODG00000007009	-	94	91.337	ENSMALG00000008716	polr2a	99	91.993	Monopterus_albus
ENSMODG00000007009	-	100	99.492	MGP_CAROLIEiJ_G0016587	Polr2a	100	99.492	Mus_caroli
ENSMODG00000007009	-	100	99.492	ENSMUSG00000005198	Polr2a	100	99.492	Mus_musculus
ENSMODG00000007009	-	100	97.724	MGP_PahariEiJ_G0017718	Polr2a	100	97.724	Mus_pahari
ENSMODG00000007009	-	100	99.492	MGP_SPRETEiJ_G0017423	Polr2a	100	99.492	Mus_spretus
ENSMODG00000007009	-	100	99.492	ENSMPUG00000009648	-	100	99.492	Mustela_putorius_furo
ENSMODG00000007009	-	100	99.037	ENSMLUG00000009088	-	100	99.037	Myotis_lucifugus
ENSMODG00000007009	-	100	99.543	ENSNGAG00000002543	Polr2a	100	99.543	Nannospalax_galili
ENSMODG00000007009	-	82	91.816	ENSNBRG00000002005	polr2a	81	91.806	Neolamprologus_brichardi
ENSMODG00000007009	-	100	98.328	ENSNLEG00000009460	-	100	98.328	Nomascus_leucogenys
ENSMODG00000007009	-	94	100.000	ENSMEUG00000008611	-	93	100.000	Notamacropus_eugenii
ENSMODG00000007009	-	80	99.242	ENSOPRG00000015116	-	99	99.242	Ochotona_princeps
ENSMODG00000007009	-	100	91.891	ENSODEG00000017674	-	100	94.822	Octodon_degus
ENSMODG00000007009	-	82	94.110	ENSONIG00000009231	polr2a	82	94.103	Oreochromis_niloticus
ENSMODG00000007009	-	100	96.956	ENSOCUG00000017929	-	100	97.252	Oryctolagus_cuniculus
ENSMODG00000007009	-	82	94.048	ENSORLG00000006431	polr2a	82	94.041	Oryzias_latipes
ENSMODG00000007009	-	82	94.048	ENSORLG00020010235	polr2a	82	94.041	Oryzias_latipes_hni
ENSMODG00000007009	-	82	94.048	ENSORLG00015007075	polr2a	82	94.041	Oryzias_latipes_hsok
ENSMODG00000007009	-	92	94.158	ENSOMEG00000010713	polr2a	100	94.158	Oryzias_melastigma
ENSMODG00000007009	-	100	99.391	ENSOGAG00000033608	-	100	99.391	Otolemur_garnettii
ENSMODG00000007009	-	98	99.312	ENSOARG00000013874	-	100	99.312	Ovis_aries
ENSMODG00000007009	-	93	96.627	ENSPPAG00000043734	-	100	97.005	Pan_paniscus
ENSMODG00000007009	-	100	98.328	ENSPTRG00000008691	POLR2A	100	98.328	Pan_troglodytes
ENSMODG00000007009	-	100	98.883	ENSPANG00000024099	-	100	98.883	Papio_anubis
ENSMODG00000007009	-	77	93.018	ENSPKIG00000005727	polr2a	85	82.000	Paramormyrops_kingsleyae
ENSMODG00000007009	-	98	96.661	ENSPSIG00000014006	POLR2A	100	96.661	Pelodiscus_sinensis
ENSMODG00000007009	-	100	94.043	ENSPMGG00000019734	polr2a	99	94.475	Periophthalmus_magnuspinnatus
ENSMODG00000007009	-	100	99.543	ENSPEMG00000012521	Polr2a	100	99.543	Peromyscus_maniculatus_bairdii
ENSMODG00000007009	-	96	87.782	ENSPCIG00000028851	-	96	87.782	Phascolarctos_cinereus
ENSMODG00000007009	-	85	94.358	ENSPFOG00000007890	polr2a	99	94.351	Poecilia_formosa
ENSMODG00000007009	-	85	94.358	ENSPLAG00000007399	polr2a	99	94.351	Poecilia_latipinna
ENSMODG00000007009	-	85	94.358	ENSPMEG00000002071	polr2a	99	94.351	Poecilia_mexicana
ENSMODG00000007009	-	82	94.296	ENSPREG00000013122	polr2a	82	94.289	Poecilia_reticulata
ENSMODG00000007009	-	100	96.349	ENSPPYG00000007924	-	100	98.479	Pongo_abelii
ENSMODG00000007009	-	92	99.211	ENSPCAG00000006951	-	92	99.211	Procavia_capensis
ENSMODG00000007009	-	100	98.338	ENSPCOG00000025260	-	100	98.338	Propithecus_coquereli
ENSMODG00000007009	-	100	99.289	ENSPVAG00000005069	-	100	99.289	Pteropus_vampyrus
ENSMODG00000007009	-	83	94.081	ENSPNYG00000022340	polr2a	82	93.979	Pundamilia_nyererei
ENSMODG00000007009	-	82	94.358	ENSPNAG00000011237	polr2a	82	94.351	Pygocentrus_nattereri
ENSMODG00000007009	-	100	99.492	ENSRNOG00000028834	Polr2a	100	99.492	Rattus_norvegicus
ENSMODG00000007009	-	82	99.069	ENSRBIG00000002471	-	100	96.193	Rhinopithecus_bieti
ENSMODG00000007009	-	100	99.188	ENSRROG00000029583	-	100	99.188	Rhinopithecus_roxellana
ENSMODG00000007009	-	82	88.000	YDL140C	RPO21	99	80.180	Saccharomyces_cerevisiae
ENSMODG00000007009	-	100	99.543	ENSSBOG00000000808	-	100	99.543	Saimiri_boliviensis_boliviensis
ENSMODG00000007009	-	100	97.289	ENSSHAG00000002858	-	100	97.513	Sarcophilus_harrisii
ENSMODG00000007009	-	82	94.420	ENSSFOG00015023275	polr2a	82	94.413	Scleropages_formosus
ENSMODG00000007009	-	82	93.862	ENSSMAG00000009137	polr2a	82	93.855	Scophthalmus_maximus
ENSMODG00000007009	-	82	94.296	ENSSDUG00000020466	polr2a	82	94.289	Seriola_dumerili
ENSMODG00000007009	-	82	94.296	ENSSLDG00000020613	polr2a	82	94.289	Seriola_lalandi_dorsalis
ENSMODG00000007009	-	97	94.557	ENSSARG00000005875	-	99	94.557	Sorex_araneus
ENSMODG00000007009	-	100	94.296	ENSSPAG00000016741	polr2a	94	94.289	Stegastes_partitus
ENSMODG00000007009	-	100	98.782	ENSSSCG00000028278	-	100	98.782	Sus_scrofa
ENSMODG00000007009	-	99	88.352	ENSTRUG00000012320	polr2a	81	88.337	Takifugu_rubripes
ENSMODG00000007009	-	99	92.684	ENSTNIG00000010136	polr2a	100	92.675	Tetraodon_nigroviridis
ENSMODG00000007009	-	74	99.441	ENSTBEG00000013294	-	58	99.441	Tupaia_belangeri
ENSMODG00000007009	-	100	98.020	ENSTTRG00000014273	-	100	98.020	Tursiops_truncatus
ENSMODG00000007009	-	96	96.471	ENSUAMG00000014866	-	100	99.071	Ursus_americanus
ENSMODG00000007009	-	99	97.021	ENSUMAG00000015732	-	100	97.021	Ursus_maritimus
ENSMODG00000007009	-	65	100.000	ENSVPAG00000008842	-	76	100.000	Vicugna_pacos
ENSMODG00000007009	-	100	96.199	ENSVVUG00000027878	-	100	98.122	Vulpes_vulpes
ENSMODG00000007009	-	99	97.074	ENSXETG00000012465	polr2a	100	97.074	Xenopus_tropicalis
ENSMODG00000007009	-	93	92.126	ENSXCOG00000001804	polr2a	94	92.117	Xiphophorus_couchianus
ENSMODG00000007009	-	82	94.358	ENSXMAG00000015687	polr2a	82	94.351	Xiphophorus_maculatus