EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSMODG00000007275 (Gene tree)
Gene ID
100016218
Gene Symbol
LSM3
Alias
SMX4|USS2|YLR438C
Full Name
LSM3 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Monodelphis_domestica
Status
putative
Strand
Minus strand
Length
64958 bases
Position
chr6:249365219-249430176
Accession
100016218
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMODP00000039892LSMPF01423.223.3e-2011
ENSMODP00000009020LSMPF01423.223.7e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMODT00000009197LSM3-202376-ENSMODP00000009020102 (aa)XP_001366562F7FQM0
ENSMODT00000042996LSM3-2012758-ENSMODP0000003989299 (aa)-K7E291
Gene Model
Click here to download ENSMODG00000007275's gene model file
Pathways
Pathway IDPathway NameSource
mdo03018RNA degradationKEGG
mdo03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000007275's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMODG00000007275LSM38031.707ENSMODG00000021539-6931.707
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMODG00000007275LSM310099.020ENSG00000170860LSM310099.020Homo_sapiens
ENSMODG00000007275LSM310094.118ENSAPOG00000018947lsm310094.118Acanthochromis_polyacanthus
ENSMODG00000007275LSM310099.020ENSAMEG00000009405LSM310099.020Ailuropoda_melanoleuca
ENSMODG00000007275LSM310093.137ENSACIG00000004574lsm37193.137Amphilophus_citrinellus
ENSMODG00000007275LSM310094.118ENSAOCG00000007658lsm310094.118Amphiprion_ocellaris
ENSMODG00000007275LSM310094.118ENSAPEG00000018621lsm310094.118Amphiprion_percula
ENSMODG00000007275LSM310094.118ENSATEG00000005153lsm310094.118Anabas_testudineus
ENSMODG00000007275LSM396100.000ENSAPLG00000014499LSM3100100.000Anas_platyrhynchos
ENSMODG00000007275LSM310098.039ENSACAG00000013503LSM310098.039Anolis_carolinensis
ENSMODG00000007275LSM310096.078ENSANAG00000002903-10096.078Aotus_nancymaae
ENSMODG00000007275LSM310099.020ENSANAG00000034627LSM310099.020Aotus_nancymaae
ENSMODG00000007275LSM39894.845ENSACLG00000001726-9495.876Astatotilapia_calliptera
ENSMODG00000007275LSM310096.078ENSAMXG00000041214lsm310096.078Astyanax_mexicanus
ENSMODG00000007275LSM39798.958ENSBTAG00000007363LSM3100100.000Bos_taurus
ENSMODG00000007275LSM310069.608WBGene00003077lsm-310069.608Caenorhabditis_elegans
ENSMODG00000007275LSM310097.059ENSCAFG00000001760LSM310097.059Canis_familiaris
ENSMODG00000007275LSM310090.196ENSCAFG00020016680-10090.196Canis_lupus_dingo
ENSMODG00000007275LSM310088.785ENSCAFG00020020950-10088.785Canis_lupus_dingo
ENSMODG00000007275LSM310097.059ENSCAFG00020017266-10097.059Canis_lupus_dingo
ENSMODG00000007275LSM310097.059ENSCAFG00020021584-10097.059Canis_lupus_dingo
ENSMODG00000007275LSM310096.078ENSCAFG00020026452-10096.078Canis_lupus_dingo
ENSMODG00000007275LSM310099.020ENSCHIG00000024650LSM310099.020Capra_hircus
ENSMODG00000007275LSM39979.208ENSTSYG00000028528-9979.208Carlito_syrichta
ENSMODG00000007275LSM310098.039ENSTSYG00000005204-10098.039Carlito_syrichta
ENSMODG00000007275LSM39798.958ENSCAPG00000015760LSM3100100.000Cavia_aperea
ENSMODG00000007275LSM310099.020ENSCPOG00000034071LSM310099.020Cavia_porcellus
ENSMODG00000007275LSM310099.020ENSCCAG00000019503-10099.020Cebus_capucinus
ENSMODG00000007275LSM310079.412ENSCCAG00000032763-10079.412Cebus_capucinus
ENSMODG00000007275LSM310099.020ENSCCAG00000036499-10099.020Cebus_capucinus
ENSMODG00000007275LSM310099.020ENSCATG00000039421LSM310099.020Cercocebus_atys
ENSMODG00000007275LSM39978.218ENSCATG00000031630-9978.218Cercocebus_atys
ENSMODG00000007275LSM310099.020ENSCLAG00000015997LSM310099.020Chinchilla_lanigera
ENSMODG00000007275LSM310094.118ENSCSAG00000019525-10094.118Chlorocebus_sabaeus
ENSMODG00000007275LSM310098.039ENSCPBG00000014531LSM310098.039Chrysemys_picta_bellii
ENSMODG00000007275LSM310081.731ENSCSAVG00000009542-10081.731Ciona_savignyi
ENSMODG00000007275LSM310096.078ENSCANG00000038037-10096.078Colobus_angolensis_palliatus
ENSMODG00000007275LSM310094.118ENSCANG00000018782-10094.118Colobus_angolensis_palliatus
ENSMODG00000007275LSM310099.020ENSCANG00000033944-10099.020Colobus_angolensis_palliatus
ENSMODG00000007275LSM310074.757ENSCGRG00001008639-10074.757Cricetulus_griseus_chok1gshd
ENSMODG00000007275LSM310099.020ENSCGRG00001017598Lsm310099.020Cricetulus_griseus_chok1gshd
ENSMODG00000007275LSM39885.000ENSCGRG00001011396-10085.000Cricetulus_griseus_chok1gshd
ENSMODG00000007275LSM310099.020ENSCGRG00000016159Lsm310099.020Cricetulus_griseus_crigri
ENSMODG00000007275LSM39684.211ENSCGRG00000012129-10084.211Cricetulus_griseus_crigri
ENSMODG00000007275LSM310094.118ENSCSEG00000015071lsm37794.118Cynoglossus_semilaevis
ENSMODG00000007275LSM310093.137ENSCVAG00000006933lsm310093.137Cyprinodon_variegatus
ENSMODG00000007275LSM310098.039ENSDARG00000089663lsm310098.039Danio_rerio
ENSMODG00000007275LSM310099.020ENSDNOG00000030808LSM310099.020Dasypus_novemcinctus
ENSMODG00000007275LSM310099.020ENSDORG00000006894-10099.020Dipodomys_ordii
ENSMODG00000007275LSM310079.412ENSDORG00000024490-10079.412Dipodomys_ordii
ENSMODG00000007275LSM310076.699FBgn0051184LSm310076.699Drosophila_melanogaster
ENSMODG00000007275LSM310099.020ENSETEG00000016207LSM310099.020Echinops_telfairi
ENSMODG00000007275LSM310089.216ENSEBUG00000004943lsm310089.216Eptatretus_burgeri
ENSMODG00000007275LSM310099.020ENSEASG00005015443LSM310099.020Equus_asinus_asinus
ENSMODG00000007275LSM310099.020ENSECAG00000007803LSM310099.020Equus_caballus
ENSMODG00000007275LSM310095.098ENSELUG00000018922lsm310095.098Esox_lucius
ENSMODG00000007275LSM310099.020ENSFCAG00000038453LSM310099.020Felis_catus
ENSMODG00000007275LSM310074.510ENSFCAG00000044344-10074.510Felis_catus
ENSMODG00000007275LSM310098.039ENSFALG00000012644LSM310098.039Ficedula_albicollis
ENSMODG00000007275LSM310099.020ENSFDAG00000011470LSM310099.020Fukomys_damarensis
ENSMODG00000007275LSM310094.118ENSFHEG00000000876lsm310094.118Fundulus_heteroclitus
ENSMODG00000007275LSM39696.842ENSGMOG00000011024lsm310096.842Gadus_morhua
ENSMODG00000007275LSM310094.118ENSGAFG00000013965lsm310094.118Gambusia_affinis
ENSMODG00000007275LSM310094.118ENSGACG00000003488lsm310094.118Gasterosteus_aculeatus
ENSMODG00000007275LSM310098.039ENSGAGG00000025707LSM310098.039Gopherus_agassizii
ENSMODG00000007275LSM310099.020ENSGGOG00000010006LSM310099.020Gorilla_gorilla
ENSMODG00000007275LSM310094.118ENSHBUG00000022399lsm310094.118Haplochromis_burtoni
ENSMODG00000007275LSM310099.020ENSHGLG00000000651LSM310099.020Heterocephalus_glaber_female
ENSMODG00000007275LSM310079.412ENSHGLG00000015564-10079.412Heterocephalus_glaber_female
ENSMODG00000007275LSM310099.020ENSHGLG00100011343LSM310099.020Heterocephalus_glaber_male
ENSMODG00000007275LSM310079.412ENSHGLG00100010658-10079.412Heterocephalus_glaber_male
ENSMODG00000007275LSM310093.137ENSHCOG00000013481lsm310093.137Hippocampus_comes
ENSMODG00000007275LSM310096.078ENSIPUG00000009207lsm310096.078Ictalurus_punctatus
ENSMODG00000007275LSM310099.020ENSSTOG00000006842LSM310099.020Ictidomys_tridecemlineatus
ENSMODG00000007275LSM310099.020ENSJJAG00000017351Lsm310099.020Jaculus_jaculus
ENSMODG00000007275LSM310090.196ENSJJAG00000012797-10090.196Jaculus_jaculus
ENSMODG00000007275LSM39975.490ENSJJAG00000018311-10075.490Jaculus_jaculus
ENSMODG00000007275LSM310093.137ENSKMAG00000015182lsm310093.137Kryptolebias_marmoratus
ENSMODG00000007275LSM39894.845ENSLBEG00000021292lsm39994.845Labrus_bergylta
ENSMODG00000007275LSM310096.078ENSLOCG00000013560lsm310096.078Lepisosteus_oculatus
ENSMODG00000007275LSM310098.058ENSLAFG00000023308LSM310098.058Loxodonta_africana
ENSMODG00000007275LSM310099.020ENSMFAG00000003185LSM310099.020Macaca_fascicularis
ENSMODG00000007275LSM310077.451ENSMMUG00000043596-10077.451Macaca_mulatta
ENSMODG00000007275LSM310099.020ENSMMUG00000023126LSM310099.020Macaca_mulatta
ENSMODG00000007275LSM39579.787ENSMMUG00000002294-9279.167Macaca_mulatta
ENSMODG00000007275LSM39980.198ENSMNEG00000037686-9980.198Macaca_nemestrina
ENSMODG00000007275LSM310099.020ENSMNEG00000043632LSM310099.020Macaca_nemestrina
ENSMODG00000007275LSM310099.020ENSMLEG00000036162LSM310099.020Mandrillus_leucophaeus
ENSMODG00000007275LSM310094.118ENSMAMG00000012807lsm310094.118Mastacembelus_armatus
ENSMODG00000007275LSM310094.118ENSMZEG00005016682lsm37394.118Maylandia_zebra
ENSMODG00000007275LSM39798.958ENSMGAG00000007776LSM3100100.000Meleagris_gallopavo
ENSMODG00000007275LSM310084.314ENSMICG00000027821-10084.314Microcebus_murinus
ENSMODG00000007275LSM310098.039ENSMICG00000032361-10098.039Microcebus_murinus
ENSMODG00000007275LSM310099.020ENSMOCG00000014269Lsm310099.020Microtus_ochrogaster
ENSMODG00000007275LSM310093.137ENSMMOG00000020715lsm310093.137Mola_mola
ENSMODG00000007275LSM310094.118ENSMALG00000006485lsm310094.118Monopterus_albus
ENSMODG00000007275LSM310099.020ENSMUSG00000034192Lsm310099.020Mus_musculus
ENSMODG00000007275LSM310099.020MGP_PahariEiJ_G0022402Lsm310099.020Mus_pahari
ENSMODG00000007275LSM310099.020MGP_SPRETEiJ_G0029681Lsm310099.020Mus_spretus
ENSMODG00000007275LSM38391.765ENSMPUG00000017256-10091.765Mustela_putorius_furo
ENSMODG00000007275LSM39787.879ENSMPUG00000019120-9787.879Mustela_putorius_furo
ENSMODG00000007275LSM310091.176ENSMLUG00000024700-10091.176Myotis_lucifugus
ENSMODG00000007275LSM310099.020ENSMLUG00000010677LSM310099.020Myotis_lucifugus
ENSMODG00000007275LSM39979.208ENSNGAG00000010207-9979.208Nannospalax_galili
ENSMODG00000007275LSM310074.510ENSNGAG00000013716-10074.510Nannospalax_galili
ENSMODG00000007275LSM310099.020ENSNGAG00000022450Lsm310099.020Nannospalax_galili
ENSMODG00000007275LSM310094.118ENSNBRG00000014318lsm310094.118Neolamprologus_brichardi
ENSMODG00000007275LSM310099.020ENSNLEG00000005079LSM310099.020Nomascus_leucogenys
ENSMODG00000007275LSM310090.196ENSNLEG00000030229-10090.196Nomascus_leucogenys
ENSMODG00000007275LSM310097.059ENSODEG00000019158-10097.059Octodon_degus
ENSMODG00000007275LSM310091.176ENSODEG00000019403-10091.176Octodon_degus
ENSMODG00000007275LSM310099.020ENSODEG00000001726LSM310099.020Octodon_degus
ENSMODG00000007275LSM310098.039ENSODEG00000019740-10098.039Octodon_degus
ENSMODG00000007275LSM310094.118ENSONIG00000000370lsm310094.118Oreochromis_niloticus
ENSMODG00000007275LSM310094.118ENSONIG00000021369-10094.118Oreochromis_niloticus
ENSMODG00000007275LSM3100100.000ENSOANG00000012273LSM3100100.000Ornithorhynchus_anatinus
ENSMODG00000007275LSM310099.020ENSOCUG00000027653-10099.020Oryctolagus_cuniculus
ENSMODG00000007275LSM310094.118ENSOCUG00000011088-10094.118Oryctolagus_cuniculus
ENSMODG00000007275LSM310094.118ENSORLG00000025900lsm310094.118Oryzias_latipes
ENSMODG00000007275LSM310094.118ENSORLG00020007125lsm310094.118Oryzias_latipes_hni
ENSMODG00000007275LSM310094.118ENSORLG00015002944lsm310094.118Oryzias_latipes_hsok
ENSMODG00000007275LSM310094.118ENSOMEG00000001915lsm310094.118Oryzias_melastigma
ENSMODG00000007275LSM39698.980ENSOGAG00000028858-10098.980Otolemur_garnettii
ENSMODG00000007275LSM310089.216ENSOGAG00000033051-10089.216Otolemur_garnettii
ENSMODG00000007275LSM310099.020ENSOGAG00000007659-10099.020Otolemur_garnettii
ENSMODG00000007275LSM310098.058ENSOARG00000000600LSM310098.058Ovis_aries
ENSMODG00000007275LSM310099.020ENSPPAG00000034074LSM310099.020Pan_paniscus
ENSMODG00000007275LSM39992.079ENSPPRG00000010610-8992.079Panthera_pardus
ENSMODG00000007275LSM310099.020ENSPPRG00000012912-10099.020Panthera_pardus
ENSMODG00000007275LSM310098.039ENSPPRG00000020953-10098.039Panthera_pardus
ENSMODG00000007275LSM310099.020ENSPTIG00000003463-10099.020Panthera_tigris_altaica
ENSMODG00000007275LSM310099.020ENSPTIG00000013072-10099.020Panthera_tigris_altaica
ENSMODG00000007275LSM310099.020ENSPTRG00000014650LSM310099.020Pan_troglodytes
ENSMODG00000007275LSM310078.431ENSPANG00000032192-10078.431Papio_anubis
ENSMODG00000007275LSM310099.020ENSPANG00000009378LSM310099.020Papio_anubis
ENSMODG00000007275LSM310097.059ENSPKIG00000008037lsm39197.059Paramormyrops_kingsleyae
ENSMODG00000007275LSM310098.039ENSPSIG00000015720LSM310098.039Pelodiscus_sinensis
ENSMODG00000007275LSM310091.919ENSPMGG00000012103lsm310091.919Periophthalmus_magnuspinnatus
ENSMODG00000007275LSM310082.353ENSPEMG00000020213-10082.353Peromyscus_maniculatus_bairdii
ENSMODG00000007275LSM310099.020ENSPEMG00000015797Lsm310099.020Peromyscus_maniculatus_bairdii
ENSMODG00000007275LSM310094.118ENSPFOG00000008372lsm310094.118Poecilia_formosa
ENSMODG00000007275LSM310094.118ENSPLAG00000000563lsm310094.118Poecilia_latipinna
ENSMODG00000007275LSM310094.118ENSPMEG00000022052lsm310094.118Poecilia_mexicana
ENSMODG00000007275LSM310094.118ENSPREG00000022485lsm310094.118Poecilia_reticulata
ENSMODG00000007275LSM310099.020ENSPPYG00000013402LSM310099.020Pongo_abelii
ENSMODG00000007275LSM310099.020ENSPCAG00000017077LSM310099.020Procavia_capensis
ENSMODG00000007275LSM310098.039ENSPCOG00000016217-10098.039Propithecus_coquereli
ENSMODG00000007275LSM39476.042ENSPCOG00000014435-9876.042Propithecus_coquereli
ENSMODG00000007275LSM310099.020ENSPVAG00000016795LSM310099.020Pteropus_vampyrus
ENSMODG00000007275LSM310094.118ENSPNYG00000009552lsm37394.118Pundamilia_nyererei
ENSMODG00000007275LSM310096.078ENSPNAG00000023467lsm310096.078Pygocentrus_nattereri
ENSMODG00000007275LSM310099.020ENSRNOG00000008733Lsm310099.020Rattus_norvegicus
ENSMODG00000007275LSM310082.353ENSRBIG00000043783-10082.353Rhinopithecus_bieti
ENSMODG00000007275LSM310099.020ENSRBIG00000034399LSM310099.020Rhinopithecus_bieti
ENSMODG00000007275LSM310099.020ENSRROG00000033276-10099.020Rhinopithecus_roxellana
ENSMODG00000007275LSM310083.333ENSRROG00000039868-10083.333Rhinopithecus_roxellana
ENSMODG00000007275LSM310088.235ENSRROG00000044047-10088.235Rhinopithecus_roxellana
ENSMODG00000007275LSM310081.373ENSRROG00000044056-10081.373Rhinopithecus_roxellana
ENSMODG00000007275LSM310099.020ENSSBOG00000024310LSM310099.020Saimiri_boliviensis_boliviensis
ENSMODG00000007275LSM310096.078ENSSFOG00015007071lsm310096.078Scleropages_formosus
ENSMODG00000007275LSM310094.118ENSSMAG00000001818lsm310094.118Scophthalmus_maximus
ENSMODG00000007275LSM310094.118ENSSDUG00000006040lsm310094.118Seriola_dumerili
ENSMODG00000007275LSM310094.118ENSSLDG00000006399lsm310094.118Seriola_lalandi_dorsalis
ENSMODG00000007275LSM359100.000ENSSARG00000005275-100100.000Sorex_araneus
ENSMODG00000007275LSM310088.235ENSSPUG00000005394LSM310088.235Sphenodon_punctatus
ENSMODG00000007275LSM396100.000ENSSPUG00000017047-99100.000Sphenodon_punctatus
ENSMODG00000007275LSM310083.333ENSSPAG00000000934lsm310083.333Stegastes_partitus
ENSMODG00000007275LSM39576.289ENSSSCG00000023718-9976.289Sus_scrofa
ENSMODG00000007275LSM310099.020ENSSSCG00000011601LSM310099.020Sus_scrofa
ENSMODG00000007275LSM310098.039ENSTGUG00000008327LSM310098.039Taeniopygia_guttata
ENSMODG00000007275LSM310093.137ENSTRUG00000023175lsm310093.137Takifugu_rubripes
ENSMODG00000007275LSM310093.137ENSTNIG00000005589lsm310093.137Tetraodon_nigroviridis
ENSMODG00000007275LSM310089.216ENSTBEG00000001050-9989.216Tupaia_belangeri
ENSMODG00000007275LSM310099.020ENSTTRG00000011197LSM310099.020Tursiops_truncatus
ENSMODG00000007275LSM310099.020ENSUAMG00000017250-10099.020Ursus_americanus
ENSMODG00000007275LSM310099.020ENSUMAG00000015905LSM310099.020Ursus_maritimus
ENSMODG00000007275LSM396100.000ENSVPAG00000010709LSM3100100.000Vicugna_pacos
ENSMODG00000007275LSM310090.196ENSVVUG00000024228-10090.196Vulpes_vulpes
ENSMODG00000007275LSM310095.098ENSVVUG00000029294-10095.098Vulpes_vulpes
ENSMODG00000007275LSM310094.118ENSVVUG00000005684-10094.118Vulpes_vulpes
ENSMODG00000007275LSM310094.118ENSVVUG00000006481-10094.118Vulpes_vulpes
ENSMODG00000007275LSM310095.098ENSVVUG00000007332-9195.098Vulpes_vulpes
ENSMODG00000007275LSM310098.039ENSXETG00000011534lsm310098.039Xenopus_tropicalis
ENSMODG00000007275LSM310094.118ENSXCOG00000017432LSM310094.118Xiphophorus_couchianus
ENSMODG00000007275LSM310094.118ENSXMAG00000009151lsm310094.118Xiphophorus_maculatus

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