EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMODG00000008029 (Gene tree)
Gene ID: 100023187
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Minus strand
Length: 83684 bases
Position: chr4:288615377-288699060
Accession: 20320
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000009994	RRM_1	PF00076.22	3.2e-32	1	2
ENSMODP00000009994	RRM_1	PF00076.22	3.2e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000010186	PSPC1-201	2246	-	ENSMODP00000009994	619 (aa)	-	F7CKP3

Gene Model

Click here to download ENSMODG00000008029's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000008029's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMODG00000008029	PSPC1	69	62.587	ENSMODG00000004445	NONO	88	67.013
ENSMODG00000008029	PSPC1	63	66.582	ENSMODG00000017937	SFPQ	57	65.897

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000008029	PSPC1	78	96.495	ENSG00000121390	PSPC1	100	96.371	Homo_sapiens
ENSMODG00000008029	PSPC1	68	74.353	ENSAPOG00000015946	pspc1	81	72.998	Acanthochromis_polyacanthus
ENSMODG00000008029	PSPC1	78	96.289	ENSAMEG00000017420	PSPC1	93	96.289	Ailuropoda_melanoleuca
ENSMODG00000008029	PSPC1	71	61.969	ENSACIG00000018695	pspc1	82	60.403	Amphilophus_citrinellus
ENSMODG00000008029	PSPC1	66	75.669	ENSAOCG00000005279	pspc1	81	72.540	Amphiprion_ocellaris
ENSMODG00000008029	PSPC1	66	75.669	ENSAPEG00000015927	pspc1	81	72.540	Amphiprion_percula
ENSMODG00000008029	PSPC1	66	60.964	ENSATEG00000004878	pspc1	81	60.227	Anabas_testudineus
ENSMODG00000008029	PSPC1	58	70.718	ENSAPLG00000003643	SFPQ	69	68.852	Anas_platyrhynchos
ENSMODG00000008029	PSPC1	59	92.623	ENSAPLG00000006246	PSPC1	91	92.623	Anas_platyrhynchos
ENSMODG00000008029	PSPC1	78	84.600	ENSACAG00000002093	PSPC1	92	84.805	Anolis_carolinensis
ENSMODG00000008029	PSPC1	60	59.635	ENSACAG00000013307	-	56	64.738	Anolis_carolinensis
ENSMODG00000008029	PSPC1	80	94.758	ENSANAG00000000059	PSPC1	98	94.041	Aotus_nancymaae
ENSMODG00000008029	PSPC1	76	58.884	ENSACLG00000027220	pspc1	77	61.687	Astatotilapia_calliptera
ENSMODG00000008029	PSPC1	78	65.010	ENSAMXG00000036881	pspc1	82	71.269	Astyanax_mexicanus
ENSMODG00000008029	PSPC1	78	94.033	ENSBTAG00000003934	PSPC1	93	93.004	Bos_taurus
ENSMODG00000008029	PSPC1	78	96.495	ENSCJAG00000004554	PSPC1	93	96.495	Callithrix_jacchus
ENSMODG00000008029	PSPC1	78	96.082	ENSCAFG00020002009	PSPC1	98	96.891	Canis_lupus_dingo
ENSMODG00000008029	PSPC1	78	94.033	ENSCHIG00000016708	PSPC1	93	93.004	Capra_hircus
ENSMODG00000008029	PSPC1	58	89.835	ENSTSYG00000032882	PSPC1	84	83.029	Carlito_syrichta
ENSMODG00000008029	PSPC1	78	95.670	ENSCPOG00000000395	PSPC1	98	96.373	Cavia_porcellus
ENSMODG00000008029	PSPC1	78	96.495	ENSCCAG00000033498	PSPC1	93	96.495	Cebus_capucinus
ENSMODG00000008029	PSPC1	78	96.495	ENSCATG00000036434	PSPC1	99	96.970	Cercocebus_atys
ENSMODG00000008029	PSPC1	68	86.588	ENSCLAG00000005241	PSPC1	91	86.588	Chinchilla_lanigera
ENSMODG00000008029	PSPC1	78	90.103	ENSCHOG00000008913	PSPC1	93	89.897	Choloepus_hoffmanni
ENSMODG00000008029	PSPC1	78	86.475	ENSCPBG00000020859	PSPC1	82	94.186	Chrysemys_picta_bellii
ENSMODG00000008029	PSPC1	50	58.766	ENSCSAVG00000003533	-	53	61.786	Ciona_savignyi
ENSMODG00000008029	PSPC1	59	82.834	ENSCANG00000018948	PSPC1	87	99.618	Colobus_angolensis_palliatus
ENSMODG00000008029	PSPC1	78	95.670	ENSCGRG00001018368	Pspc1	93	95.670	Cricetulus_griseus_chok1gshd
ENSMODG00000008029	PSPC1	78	95.670	ENSCGRG00000011724	Pspc1	93	95.670	Cricetulus_griseus_crigri
ENSMODG00000008029	PSPC1	65	70.471	ENSCVAG00000007679	-	81	68.065	Cyprinodon_variegatus
ENSMODG00000008029	PSPC1	78	67.004	ENSDARG00000006621	pspc1	88	70.924	Danio_rerio
ENSMODG00000008029	PSPC1	78	95.876	ENSDNOG00000011078	PSPC1	93	95.876	Dasypus_novemcinctus
ENSMODG00000008029	PSPC1	78	93.814	ENSDORG00000016050	Pspc1	93	93.814	Dipodomys_ordii
ENSMODG00000008029	PSPC1	66	61.871	ENSEBUG00000003964	-	62	72.174	Eptatretus_burgeri
ENSMODG00000008029	PSPC1	50	45.238	ENSEBUG00000010133	pspc1	78	48.485	Eptatretus_burgeri
ENSMODG00000008029	PSPC1	78	95.876	ENSEASG00005000119	PSPC1	99	95.630	Equus_asinus_asinus
ENSMODG00000008029	PSPC1	78	95.876	ENSECAG00000017286	PSPC1	99	95.630	Equus_caballus
ENSMODG00000008029	PSPC1	52	80.745	ENSEEUG00000011288	-	61	80.745	Erinaceus_europaeus
ENSMODG00000008029	PSPC1	71	73.469	ENSELUG00000003746	pspc1	81	80.178	Esox_lucius
ENSMODG00000008029	PSPC1	78	96.082	ENSFCAG00000027841	PSPC1	98	96.632	Felis_catus
ENSMODG00000008029	PSPC1	78	86.392	ENSFALG00000008750	PSPC1	92	86.392	Ficedula_albicollis
ENSMODG00000008029	PSPC1	78	94.021	ENSFDAG00000002617	PSPC1	93	94.021	Fukomys_damarensis
ENSMODG00000008029	PSPC1	66	70.702	ENSGMOG00000015074	pspc1	84	67.574	Gadus_morhua
ENSMODG00000008029	PSPC1	78	85.918	ENSGALG00000017142	PSPC1	82	93.721	Gallus_gallus
ENSMODG00000008029	PSPC1	55	74.785	ENSGAFG00000006327	pspc1	72	74.785	Gambusia_affinis
ENSMODG00000008029	PSPC1	66	69.756	ENSGACG00000014901	pspc1	92	73.414	Gasterosteus_aculeatus
ENSMODG00000008029	PSPC1	78	86.475	ENSGAGG00000019164	PSPC1	82	94.186	Gopherus_agassizii
ENSMODG00000008029	PSPC1	58	69.780	ENSGAGG00000017325	-	56	68.033	Gopherus_agassizii
ENSMODG00000008029	PSPC1	78	96.495	ENSGGOG00000003414	PSPC1	98	97.409	Gorilla_gorilla
ENSMODG00000008029	PSPC1	76	66.872	ENSHBUG00000001139	pspc1	77	73.850	Haplochromis_burtoni
ENSMODG00000008029	PSPC1	78	95.876	ENSHGLG00000018811	PSPC1	93	95.876	Heterocephalus_glaber_female
ENSMODG00000008029	PSPC1	57	92.286	ENSHGLG00100007962	PSPC1	100	92.286	Heterocephalus_glaber_male
ENSMODG00000008029	PSPC1	61	71.018	ENSHCOG00000013251	pspc1	83	70.321	Hippocampus_comes
ENSMODG00000008029	PSPC1	70	75.286	ENSIPUG00000013192	pspc1	82	75.286	Ictalurus_punctatus
ENSMODG00000008029	PSPC1	78	96.495	ENSSTOG00000026833	PSPC1	98	97.409	Ictidomys_tridecemlineatus
ENSMODG00000008029	PSPC1	78	95.258	ENSJJAG00000018334	Pspc1	93	95.670	Jaculus_jaculus
ENSMODG00000008029	PSPC1	66	56.829	ENSKMAG00000013525	-	72	66.026	Kryptolebias_marmoratus
ENSMODG00000008029	PSPC1	69	71.262	ENSLBEG00000004474	pspc1	76	70.794	Labrus_bergylta
ENSMODG00000008029	PSPC1	78	75.299	ENSLACG00000010762	PSPC1	81	84.742	Latimeria_chalumnae
ENSMODG00000008029	PSPC1	68	84.762	ENSLOCG00000010832	pspc1	83	84.762	Lepisosteus_oculatus
ENSMODG00000008029	PSPC1	78	95.670	ENSLAFG00000010968	PSPC1	95	93.952	Loxodonta_africana
ENSMODG00000008029	PSPC1	78	96.289	ENSMFAG00000032728	PSPC1	99	96.753	Macaca_fascicularis
ENSMODG00000008029	PSPC1	78	96.289	ENSMMUG00000020262	PSPC1	99	96.753	Macaca_mulatta
ENSMODG00000008029	PSPC1	78	96.289	ENSMNEG00000027401	PSPC1	99	96.753	Macaca_nemestrina
ENSMODG00000008029	PSPC1	78	97.507	ENSMLEG00000039043	PSPC1	91	97.507	Mandrillus_leucophaeus
ENSMODG00000008029	PSPC1	66	73.966	ENSMAMG00000004333	pspc1	75	73.966	Mastacembelus_armatus
ENSMODG00000008029	PSPC1	76	58.884	ENSMZEG00005005726	pspc1	77	61.687	Maylandia_zebra
ENSMODG00000008029	PSPC1	59	92.391	ENSMGAG00000015134	PSPC1	91	92.391	Meleagris_gallopavo
ENSMODG00000008029	PSPC1	75	90.693	ENSMAUG00000021067	Pspc1	99	90.693	Mesocricetus_auratus
ENSMODG00000008029	PSPC1	78	96.495	ENSMICG00000013970	PSPC1	99	96.970	Microcebus_murinus
ENSMODG00000008029	PSPC1	78	95.464	ENSMOCG00000006060	Pspc1	93	95.464	Microtus_ochrogaster
ENSMODG00000008029	PSPC1	55	53.890	ENSMMOG00000004352	pspc1	62	50.862	Mola_mola
ENSMODG00000008029	PSPC1	66	72.993	ENSMALG00000008914	pspc1	83	70.115	Monopterus_albus
ENSMODG00000008029	PSPC1	78	95.679	MGP_CAROLIEiJ_G0019341	Pspc1	99	96.328	Mus_caroli
ENSMODG00000008029	PSPC1	78	95.679	ENSMUSG00000021938	Pspc1	99	96.328	Mus_musculus
ENSMODG00000008029	PSPC1	78	95.679	MGP_PahariEiJ_G0030359	Pspc1	99	96.328	Mus_pahari
ENSMODG00000008029	PSPC1	78	95.473	MGP_SPRETEiJ_G0020232	Pspc1	99	96.112	Mus_spretus
ENSMODG00000008029	PSPC1	78	95.670	ENSMPUG00000013347	PSPC1	93	95.670	Mustela_putorius_furo
ENSMODG00000008029	PSPC1	78	94.262	ENSMLUG00000017663	PSPC1	93	93.443	Myotis_lucifugus
ENSMODG00000008029	PSPC1	78	95.876	ENSNGAG00000011271	Pspc1	93	95.876	Nannospalax_galili
ENSMODG00000008029	PSPC1	62	64.070	ENSNBRG00000014059	pspc1	76	68.693	Neolamprologus_brichardi
ENSMODG00000008029	PSPC1	78	96.495	ENSNLEG00000001294	PSPC1	93	96.495	Nomascus_leucogenys
ENSMODG00000008029	PSPC1	65	99.219	ENSMEUG00000000476	PSPC1	77	99.219	Notamacropus_eugenii
ENSMODG00000008029	PSPC1	75	87.879	ENSODEG00000019012	-	88	88.961	Octodon_degus
ENSMODG00000008029	PSPC1	78	84.124	ENSODEG00000007817	-	92	78.615	Octodon_degus
ENSMODG00000008029	PSPC1	78	66.331	ENSONIG00000012010	pspc1	78	73.050	Oreochromis_niloticus
ENSMODG00000008029	PSPC1	58	97.507	ENSOANG00000009017	-	90	97.507	Ornithorhynchus_anatinus
ENSMODG00000008029	PSPC1	76	67.091	ENSOANG00000011381	-	89	65.817	Ornithorhynchus_anatinus
ENSMODG00000008029	PSPC1	78	96.701	ENSOCUG00000006153	PSPC1	95	95.161	Oryctolagus_cuniculus
ENSMODG00000008029	PSPC1	66	73.966	ENSORLG00000004232	-	77	71.429	Oryzias_latipes
ENSMODG00000008029	PSPC1	67	71.667	ENSORLG00020000578	PSPC1	82	68.864	Oryzias_latipes_hni
ENSMODG00000008029	PSPC1	66	74.634	ENSORLG00015017480	pspc1	77	72.087	Oryzias_latipes_hsok
ENSMODG00000008029	PSPC1	78	96.907	ENSOGAG00000012643	PSPC1	93	96.907	Otolemur_garnettii
ENSMODG00000008029	PSPC1	78	89.322	ENSOARG00000014163	PSPC1	92	89.322	Ovis_aries
ENSMODG00000008029	PSPC1	69	90.421	ENSPPAG00000009836	PSPC1	96	97.059	Pan_paniscus
ENSMODG00000008029	PSPC1	78	96.082	ENSPPRG00000008833	PSPC1	93	96.082	Panthera_pardus
ENSMODG00000008029	PSPC1	78	80.412	ENSPTIG00000016917	PSPC1	92	80.412	Panthera_tigris_altaica
ENSMODG00000008029	PSPC1	78	96.901	ENSPTRG00000005677	PSPC1	99	96.495	Pan_troglodytes
ENSMODG00000008029	PSPC1	78	96.495	ENSPANG00000001992	PSPC1	99	96.970	Papio_anubis
ENSMODG00000008029	PSPC1	69	77.958	ENSPKIG00000003578	pspc1	80	77.726	Paramormyrops_kingsleyae
ENSMODG00000008029	PSPC1	78	85.801	ENSPSIG00000005168	PSPC1	82	93.503	Pelodiscus_sinensis
ENSMODG00000008029	PSPC1	50	70.064	ENSPMGG00000015135	pspc1	86	70.096	Periophthalmus_magnuspinnatus
ENSMODG00000008029	PSPC1	78	95.876	ENSPEMG00000015214	Pspc1	93	95.876	Peromyscus_maniculatus_bairdii
ENSMODG00000008029	PSPC1	78	99.793	ENSPCIG00000017680	PSPC1	93	99.793	Phascolarctos_cinereus
ENSMODG00000008029	PSPC1	71	68.845	ENSPFOG00000003362	pspc1	84	70.588	Poecilia_formosa
ENSMODG00000008029	PSPC1	59	64.054	ENSPLAG00000004407	-	53	64.932	Poecilia_latipinna
ENSMODG00000008029	PSPC1	71	68.845	ENSPLAG00000011540	pspc1	83	70.588	Poecilia_latipinna
ENSMODG00000008029	PSPC1	71	68.410	ENSPMEG00000008322	pspc1	83	70.136	Poecilia_mexicana
ENSMODG00000008029	PSPC1	58	65.110	ENSPMEG00000001025	-	52	65.110	Poecilia_mexicana
ENSMODG00000008029	PSPC1	71	68.192	ENSPREG00000007786	pspc1	83	69.910	Poecilia_reticulata
ENSMODG00000008029	PSPC1	78	96.289	ENSPPYG00000005186	PSPC1	97	96.970	Pongo_abelii
ENSMODG00000008029	PSPC1	50	99.387	ENSPCAG00000008314	-	55	99.387	Procavia_capensis
ENSMODG00000008029	PSPC1	78	92.577	ENSPCOG00000014364	PSPC1	92	92.577	Propithecus_coquereli
ENSMODG00000008029	PSPC1	78	91.959	ENSPVAG00000005036	PSPC1	93	92.371	Pteropus_vampyrus
ENSMODG00000008029	PSPC1	76	58.884	ENSPNYG00000008893	pspc1	77	61.687	Pundamilia_nyererei
ENSMODG00000008029	PSPC1	78	69.106	ENSPNAG00000016511	pspc1	88	71.294	Pygocentrus_nattereri
ENSMODG00000008029	PSPC1	78	95.876	ENSRNOG00000020782	Pspc1	99	96.537	Rattus_norvegicus
ENSMODG00000008029	PSPC1	73	96.882	ENSRBIG00000036057	PSPC1	98	98.000	Rhinopithecus_bieti
ENSMODG00000008029	PSPC1	78	96.701	ENSRROG00000036334	PSPC1	98	97.668	Rhinopithecus_roxellana
ENSMODG00000008029	PSPC1	59	87.193	ENSSBOG00000028172	PSPC1	88	97.761	Saimiri_boliviensis_boliviensis
ENSMODG00000008029	PSPC1	78	94.251	ENSSHAG00000004696	PSPC1	93	94.251	Sarcophilus_harrisii
ENSMODG00000008029	PSPC1	69	78.271	ENSSFOG00015001395	pspc1	89	78.555	Scleropages_formosus
ENSMODG00000008029	PSPC1	73	66.597	ENSSMAG00000001761	pspc1	85	74.425	Scophthalmus_maximus
ENSMODG00000008029	PSPC1	66	76.642	ENSSDUG00000010651	pspc1	74	76.399	Seriola_dumerili
ENSMODG00000008029	PSPC1	66	67.322	ENSSLDG00000004284	pspc1	86	60.526	Seriola_lalandi_dorsalis
ENSMODG00000008029	PSPC1	78	86.804	ENSSARG00000000888	PSPC1	93	87.423	Sorex_araneus
ENSMODG00000008029	PSPC1	67	56.971	ENSSPUG00000001136	-	53	61.345	Sphenodon_punctatus
ENSMODG00000008029	PSPC1	78	73.469	ENSSPUG00000008550	PSPC1	81	79.814	Sphenodon_punctatus
ENSMODG00000008029	PSPC1	66	76.156	ENSSPAG00000001921	pspc1	75	75.912	Stegastes_partitus
ENSMODG00000008029	PSPC1	78	93.814	ENSSSCG00000009569	PSPC1	99	94.041	Sus_scrofa
ENSMODG00000008029	PSPC1	69	93.939	ENSTGUG00000011295	PSPC1	92	93.939	Taeniopygia_guttata
ENSMODG00000008029	PSPC1	66	66.423	ENSTRUG00000011335	pspc1	77	66.180	Takifugu_rubripes
ENSMODG00000008029	PSPC1	68	66.824	ENSTNIG00000010358	pspc1	90	64.399	Tetraodon_nigroviridis
ENSMODG00000008029	PSPC1	78	75.826	ENSTBEG00000002361	PSPC1	94	76.446	Tupaia_belangeri
ENSMODG00000008029	PSPC1	78	94.845	ENSTTRG00000003343	PSPC1	95	91.767	Tursiops_truncatus
ENSMODG00000008029	PSPC1	57	97.151	ENSUAMG00000012309	PSPC1	100	97.151	Ursus_americanus
ENSMODG00000008029	PSPC1	73	96.659	ENSUMAG00000013993	PSPC1	96	97.947	Ursus_maritimus
ENSMODG00000008029	PSPC1	58	97.784	ENSVPAG00000010029	PSPC1	90	97.784	Vicugna_pacos
ENSMODG00000008029	PSPC1	78	96.082	ENSVVUG00000006414	PSPC1	100	96.891	Vulpes_vulpes
ENSMODG00000008029	PSPC1	58	71.274	ENSXCOG00000017438	pspc1	83	73.864	Xiphophorus_couchianus
ENSMODG00000008029	PSPC1	58	71.545	ENSXMAG00000007929	pspc1	83	74.148	Xiphophorus_maculatus