EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMODG00000008475 (Gene tree)
Gene ID: 100030906
Gene Symbol: SNRNP200
Alias: ASCC3L1|BRR2|HELIC2|KIAA0788|RP33|U5-200KD
Full Name: small nuclear ribonucleoprotein U5 subunit 200
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Plus strand
Length: 39394 bases
Position: chr1:590140436-590179829
Accession: 100030906
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000010540	ResIII	PF04851.15	3e-26	1	2
ENSMODP00000010540	ResIII	PF04851.15	3e-26	2	2
ENSMODP00000010540	DEAD	PF00270.29	2.3e-53	1	2
ENSMODP00000010540	DEAD	PF00270.29	2.3e-53	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000010746	SNRNP200-201	6426	XM_001373624	ENSMODP00000010540	2136 (aa)	XP_001373661	F7G4E6

Gene Model

Click here to download ENSMODG00000008475's gene model file

Pathways

Pathway ID	Pathway Name	Source
mdo03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000008475's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMODG00000008475	SNRNP200	88	41.888	ENSMODG00000018082	ASCC3	80	44.915

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000008475	SNRNP200	100	98.970	ENSG00000144028	SNRNP200	100	98.970	Homo_sapiens
ENSMODG00000008475	SNRNP200	99	90.841	ENSAPOG00000010223	snrnp200	99	90.777	Acanthochromis_polyacanthus
ENSMODG00000008475	SNRNP200	100	99.017	ENSAMEG00000008996	SNRNP200	100	99.017	Ailuropoda_melanoleuca
ENSMODG00000008475	SNRNP200	97	90.257	ENSACIG00000001764	snrnp200	98	90.257	Amphilophus_citrinellus
ENSMODG00000008475	SNRNP200	99	90.747	ENSAOCG00000024593	snrnp200	100	90.043	Amphiprion_ocellaris
ENSMODG00000008475	SNRNP200	97	90.096	ENSAPEG00000012554	snrnp200	100	90.096	Amphiprion_percula
ENSMODG00000008475	SNRNP200	99	90.747	ENSATEG00000022522	snrnp200	99	90.684	Anabas_testudineus
ENSMODG00000008475	SNRNP200	99	97.454	ENSAPLG00000004313	SNRNP200	100	97.454	Anas_platyrhynchos
ENSMODG00000008475	SNRNP200	99	97.381	ENSACAG00000000434	SNRNP200	100	97.381	Anolis_carolinensis
ENSMODG00000008475	SNRNP200	100	94.403	ENSANAG00000036625	SNRNP200	100	94.823	Aotus_nancymaae
ENSMODG00000008475	SNRNP200	99	90.465	ENSACLG00000011188	snrnp200	99	90.403	Astatotilapia_calliptera
ENSMODG00000008475	SNRNP200	99	90.418	ENSAMXG00000005684	snrnp200	99	90.356	Astyanax_mexicanus
ENSMODG00000008475	SNRNP200	100	98.502	ENSBTAG00000000848	SNRNP200	100	98.502	Bos_taurus
ENSMODG00000008475	SNRNP200	100	98.923	ENSCJAG00000007514	SNRNP200	100	98.923	Callithrix_jacchus
ENSMODG00000008475	SNRNP200	100	98.227	ENSCAFG00020019979	SNRNP200	100	98.950	Canis_lupus_dingo
ENSMODG00000008475	SNRNP200	100	98.689	ENSCHIG00000020611	SNRNP200	100	98.689	Capra_hircus
ENSMODG00000008475	SNRNP200	100	99.017	ENSTSYG00000010467	SNRNP200	100	99.017	Carlito_syrichta
ENSMODG00000008475	SNRNP200	99	98.543	ENSCAPG00000017234	SNRNP200	99	98.543	Cavia_aperea
ENSMODG00000008475	SNRNP200	100	98.830	ENSCPOG00000006776	SNRNP200	100	98.830	Cavia_porcellus
ENSMODG00000008475	SNRNP200	100	98.923	ENSCCAG00000033962	SNRNP200	100	98.923	Cebus_capucinus
ENSMODG00000008475	SNRNP200	100	98.970	ENSCATG00000015790	SNRNP200	100	98.970	Cercocebus_atys
ENSMODG00000008475	SNRNP200	100	98.830	ENSCLAG00000004116	SNRNP200	100	98.830	Chinchilla_lanigera
ENSMODG00000008475	SNRNP200	100	98.923	ENSCSAG00000017369	SNRNP200	100	98.923	Chlorocebus_sabaeus
ENSMODG00000008475	SNRNP200	75	99.213	ENSCHOG00000012981	-	59	99.213	Choloepus_hoffmanni
ENSMODG00000008475	SNRNP200	100	97.849	ENSCPBG00000022571	SNRNP200	99	100.000	Chrysemys_picta_bellii
ENSMODG00000008475	SNRNP200	99	76.553	ENSCING00000005082	-	99	76.693	Ciona_intestinalis
ENSMODG00000008475	SNRNP200	100	93.461	ENSCANG00000033932	SNRNP200	100	98.855	Colobus_angolensis_palliatus
ENSMODG00000008475	SNRNP200	100	98.830	ENSCGRG00001022610	Snrnp200	100	98.830	Cricetulus_griseus_chok1gshd
ENSMODG00000008475	SNRNP200	100	98.270	ENSCGRG00000016472	Snrnp200	100	98.270	Cricetulus_griseus_crigri
ENSMODG00000008475	SNRNP200	100	89.981	ENSCSEG00000016399	snrnp200	100	89.981	Cynoglossus_semilaevis
ENSMODG00000008475	SNRNP200	100	85.861	ENSCVAG00000017631	snrnp200	99	85.861	Cyprinodon_variegatus
ENSMODG00000008475	SNRNP200	100	90.215	ENSDARG00000077536	snrnp200	99	90.215	Danio_rerio
ENSMODG00000008475	SNRNP200	100	97.472	ENSDNOG00000011227	SNRNP200	100	97.472	Dasypus_novemcinctus
ENSMODG00000008475	SNRNP200	100	96.260	ENSDORG00000005861	Snrnp200	100	96.260	Dipodomys_ordii
ENSMODG00000008475	SNRNP200	100	74.255	FBgn0263599	l(3)72Ab	99	74.162	Drosophila_melanogaster
ENSMODG00000008475	SNRNP200	95	98.794	ENSETEG00000000162	SNRNP200	74	98.794	Echinops_telfairi
ENSMODG00000008475	SNRNP200	83	81.076	ENSEBUG00000016524	snrnp200	95	81.076	Eptatretus_burgeri
ENSMODG00000008475	SNRNP200	100	97.902	ENSEASG00005001884	SNRNP200	100	97.902	Equus_asinus_asinus
ENSMODG00000008475	SNRNP200	100	99.017	ENSECAG00000019675	SNRNP200	100	99.017	Equus_caballus
ENSMODG00000008475	SNRNP200	88	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
ENSMODG00000008475	SNRNP200	99	90.747	ENSELUG00000018948	snrnp200	99	90.684	Esox_lucius
ENSMODG00000008475	SNRNP200	100	99.064	ENSFCAG00000010699	SNRNP200	100	99.064	Felis_catus
ENSMODG00000008475	SNRNP200	93	92.857	ENSFALG00000001368	-	95	92.857	Ficedula_albicollis
ENSMODG00000008475	SNRNP200	100	98.783	ENSFDAG00000004683	SNRNP200	100	98.783	Fukomys_damarensis
ENSMODG00000008475	SNRNP200	100	88.015	ENSFHEG00000003786	snrnp200	99	88.015	Fundulus_heteroclitus
ENSMODG00000008475	SNRNP200	100	89.673	ENSGMOG00000004881	snrnp200	99	89.626	Gadus_morhua
ENSMODG00000008475	SNRNP200	100	88.249	ENSGAFG00000010807	snrnp200	99	88.249	Gambusia_affinis
ENSMODG00000008475	SNRNP200	100	90.005	ENSGACG00000011474	snrnp200	99	89.911	Gasterosteus_aculeatus
ENSMODG00000008475	SNRNP200	95	97.686	ENSGAGG00000016069	SNRNP200	99	97.686	Gopherus_agassizii
ENSMODG00000008475	SNRNP200	100	98.970	ENSGGOG00000005174	SNRNP200	100	98.970	Gorilla_gorilla
ENSMODG00000008475	SNRNP200	97	87.780	ENSHBUG00000011322	snrnp200	99	87.827	Haplochromis_burtoni
ENSMODG00000008475	SNRNP200	100	98.830	ENSHGLG00000006654	SNRNP200	100	98.830	Heterocephalus_glaber_female
ENSMODG00000008475	SNRNP200	100	98.830	ENSHGLG00100018594	SNRNP200	100	98.830	Heterocephalus_glaber_male
ENSMODG00000008475	SNRNP200	100	98.970	ENSSTOG00000016351	SNRNP200	100	98.970	Ictidomys_tridecemlineatus
ENSMODG00000008475	SNRNP200	100	98.830	ENSJJAG00000023659	Snrnp200	100	98.830	Jaculus_jaculus
ENSMODG00000008475	SNRNP200	100	87.541	ENSKMAG00000003665	snrnp200	99	87.541	Kryptolebias_marmoratus
ENSMODG00000008475	SNRNP200	100	90.309	ENSLBEG00000021585	snrnp200	99	90.309	Labrus_bergylta
ENSMODG00000008475	SNRNP200	82	94.550	ENSLACG00000000226	SNRNP200	99	94.550	Latimeria_chalumnae
ENSMODG00000008475	SNRNP200	100	92.135	ENSLOCG00000015198	snrnp200	99	92.135	Lepisosteus_oculatus
ENSMODG00000008475	SNRNP200	100	98.736	ENSLAFG00000015626	SNRNP200	100	98.736	Loxodonta_africana
ENSMODG00000008475	SNRNP200	100	98.923	ENSMFAG00000040174	SNRNP200	100	98.923	Macaca_fascicularis
ENSMODG00000008475	SNRNP200	100	98.923	ENSMMUG00000023261	SNRNP200	100	98.923	Macaca_mulatta
ENSMODG00000008475	SNRNP200	100	98.876	ENSMNEG00000032398	SNRNP200	100	98.876	Macaca_nemestrina
ENSMODG00000008475	SNRNP200	100	98.970	ENSMLEG00000019083	SNRNP200	100	98.970	Mandrillus_leucophaeus
ENSMODG00000008475	SNRNP200	100	90.173	ENSMAMG00000007851	snrnp200	99	90.126	Mastacembelus_armatus
ENSMODG00000008475	SNRNP200	97	87.780	ENSMZEG00005010787	snrnp200	99	87.827	Maylandia_zebra
ENSMODG00000008475	SNRNP200	97	97.000	ENSMGAG00000001831	SNRNP200	100	97.000	Meleagris_gallopavo
ENSMODG00000008475	SNRNP200	100	98.876	ENSMAUG00000011825	Snrnp200	100	98.876	Mesocricetus_auratus
ENSMODG00000008475	SNRNP200	100	99.017	ENSMICG00000004710	SNRNP200	100	99.017	Microcebus_murinus
ENSMODG00000008475	SNRNP200	100	96.301	ENSMOCG00000011814	Snrnp200	100	96.301	Microtus_ochrogaster
ENSMODG00000008475	SNRNP200	99	89.009	ENSMMOG00000014167	snrnp200	99	88.951	Mola_mola
ENSMODG00000008475	SNRNP200	99	90.700	ENSMALG00000001973	snrnp200	99	90.637	Monopterus_albus
ENSMODG00000008475	SNRNP200	100	98.689	MGP_CAROLIEiJ_G0024250	Snrnp200	100	98.689	Mus_caroli
ENSMODG00000008475	SNRNP200	100	98.736	ENSMUSG00000003660	Snrnp200	100	98.736	Mus_musculus
ENSMODG00000008475	SNRNP200	100	98.783	MGP_PahariEiJ_G0025695	Snrnp200	100	98.783	Mus_pahari
ENSMODG00000008475	SNRNP200	100	98.736	MGP_SPRETEiJ_G0025170	Snrnp200	100	98.736	Mus_spretus
ENSMODG00000008475	SNRNP200	100	99.064	ENSMPUG00000008949	SNRNP200	100	99.064	Mustela_putorius_furo
ENSMODG00000008475	SNRNP200	100	98.410	ENSMLUG00000010493	SNRNP200	100	98.410	Myotis_lucifugus
ENSMODG00000008475	SNRNP200	100	94.757	ENSMLUG00000027511	-	100	94.757	Myotis_lucifugus
ENSMODG00000008475	SNRNP200	100	98.970	ENSNGAG00000021993	Snrnp200	100	98.970	Nannospalax_galili
ENSMODG00000008475	SNRNP200	90	90.319	ENSNBRG00000017960	snrnp200	98	90.371	Neolamprologus_brichardi
ENSMODG00000008475	SNRNP200	100	94.142	ENSNLEG00000000025	SNRNP200	100	94.282	Nomascus_leucogenys
ENSMODG00000008475	SNRNP200	100	100.000	ENSMEUG00000010532	SNRNP200	79	100.000	Notamacropus_eugenii
ENSMODG00000008475	SNRNP200	100	95.037	ENSOPRG00000015464	SNRNP200	100	95.037	Ochotona_princeps
ENSMODG00000008475	SNRNP200	100	98.830	ENSODEG00000008366	SNRNP200	100	98.830	Octodon_degus
ENSMODG00000008475	SNRNP200	99	90.418	ENSONIG00000010714	snrnp200	99	90.356	Oreochromis_niloticus
ENSMODG00000008475	SNRNP200	100	98.830	ENSOCUG00000009864	SNRNP200	100	98.830	Oryctolagus_cuniculus
ENSMODG00000008475	SNRNP200	100	90.215	ENSORLG00000012286	snrnp200	100	90.215	Oryzias_latipes
ENSMODG00000008475	SNRNP200	100	90.262	ENSORLG00020004648	snrnp200	100	90.262	Oryzias_latipes_hni
ENSMODG00000008475	SNRNP200	100	90.262	ENSORLG00015019114	snrnp200	100	90.288	Oryzias_latipes_hsok
ENSMODG00000008475	SNRNP200	99	90.418	ENSOMEG00000011834	snrnp200	99	90.356	Oryzias_melastigma
ENSMODG00000008475	SNRNP200	100	99.017	ENSOGAG00000006879	SNRNP200	100	99.017	Otolemur_garnettii
ENSMODG00000008475	SNRNP200	100	97.660	ENSOARG00000013949	SNRNP200	100	97.660	Ovis_aries
ENSMODG00000008475	SNRNP200	100	98.970	ENSPPAG00000041559	SNRNP200	100	98.970	Pan_paniscus
ENSMODG00000008475	SNRNP200	100	99.064	ENSPPRG00000004435	SNRNP200	100	99.064	Panthera_pardus
ENSMODG00000008475	SNRNP200	100	98.596	ENSPTIG00000006380	SNRNP200	100	98.596	Panthera_tigris_altaica
ENSMODG00000008475	SNRNP200	100	98.970	ENSPTRG00000012230	SNRNP200	100	98.970	Pan_troglodytes
ENSMODG00000008475	SNRNP200	100	98.923	ENSPANG00000006017	SNRNP200	100	98.923	Papio_anubis
ENSMODG00000008475	SNRNP200	100	91.199	ENSPKIG00000014762	snrnp200	99	91.199	Paramormyrops_kingsleyae
ENSMODG00000008475	SNRNP200	100	96.724	ENSPSIG00000008580	SNRNP200	100	96.724	Pelodiscus_sinensis
ENSMODG00000008475	SNRNP200	100	99.298	ENSPCIG00000023050	SNRNP200	100	99.298	Phascolarctos_cinereus
ENSMODG00000008475	SNRNP200	100	90.594	ENSPFOG00000015110	snrnp200	99	90.594	Poecilia_formosa
ENSMODG00000008475	SNRNP200	97	90.330	ENSPLAG00000006711	snrnp200	99	90.330	Poecilia_latipinna
ENSMODG00000008475	SNRNP200	97	90.275	ENSPMEG00000021166	snrnp200	99	90.275	Poecilia_mexicana
ENSMODG00000008475	SNRNP200	100	90.590	ENSPREG00000008875	snrnp200	99	90.590	Poecilia_reticulata
ENSMODG00000008475	SNRNP200	100	98.970	ENSPPYG00000012068	SNRNP200	100	98.970	Pongo_abelii
ENSMODG00000008475	SNRNP200	97	97.436	ENSPCAG00000008536	SNRNP200	89	97.436	Procavia_capensis
ENSMODG00000008475	SNRNP200	100	98.970	ENSPCOG00000024608	SNRNP200	100	98.970	Propithecus_coquereli
ENSMODG00000008475	SNRNP200	96	100.000	ENSPVAG00000005860	SNRNP200	93	100.000	Pteropus_vampyrus
ENSMODG00000008475	SNRNP200	99	85.995	ENSPNYG00000017476	snrnp200	99	85.948	Pundamilia_nyererei
ENSMODG00000008475	SNRNP200	100	86.096	ENSPNAG00000010998	snrnp200	99	86.096	Pygocentrus_nattereri
ENSMODG00000008475	SNRNP200	100	98.876	ENSRNOG00000012157	Snrnp200	100	98.876	Rattus_norvegicus
ENSMODG00000008475	SNRNP200	100	98.970	ENSRBIG00000044690	-	100	98.970	Rhinopithecus_bieti
ENSMODG00000008475	SNRNP200	100	98.970	ENSRROG00000037952	-	100	98.970	Rhinopithecus_roxellana
ENSMODG00000008475	SNRNP200	100	98.923	ENSSBOG00000035471	SNRNP200	100	98.923	Saimiri_boliviensis_boliviensis
ENSMODG00000008475	SNRNP200	97	99.226	ENSSHAG00000000758	SNRNP200	100	99.226	Sarcophilus_harrisii
ENSMODG00000008475	SNRNP200	99	91.404	ENSSFOG00015018826	snrnp200	99	91.339	Scleropages_formosus
ENSMODG00000008475	SNRNP200	99	90.371	ENSSMAG00000005463	snrnp200	99	90.309	Scophthalmus_maximus
ENSMODG00000008475	SNRNP200	99	90.700	ENSSDUG00000021410	snrnp200	99	90.637	Seriola_dumerili
ENSMODG00000008475	SNRNP200	99	90.700	ENSSLDG00000010884	snrnp200	99	90.637	Seriola_lalandi_dorsalis
ENSMODG00000008475	SNRNP200	95	98.928	ENSSARG00000010728	SNRNP200	96	98.928	Sorex_araneus
ENSMODG00000008475	SNRNP200	100	97.331	ENSSPUG00000003726	-	100	97.331	Sphenodon_punctatus
ENSMODG00000008475	SNRNP200	99	90.700	ENSSPAG00000001842	snrnp200	99	90.637	Stegastes_partitus
ENSMODG00000008475	SNRNP200	100	98.876	ENSSSCG00000008127	SNRNP200	100	98.876	Sus_scrofa
ENSMODG00000008475	SNRNP200	99	87.546	ENSTGUG00000014475	-	100	87.546	Taeniopygia_guttata
ENSMODG00000008475	SNRNP200	99	90.324	ENSTRUG00000001307	snrnp200	99	90.262	Takifugu_rubripes
ENSMODG00000008475	SNRNP200	100	86.059	ENSTNIG00000004320	snrnp200	100	86.059	Tetraodon_nigroviridis
ENSMODG00000008475	SNRNP200	82	98.990	ENSTBEG00000003329	-	67	98.990	Tupaia_belangeri
ENSMODG00000008475	SNRNP200	100	98.689	ENSTTRG00000004983	SNRNP200	100	98.689	Tursiops_truncatus
ENSMODG00000008475	SNRNP200	75	91.957	ENSUAMG00000008395	-	95	91.957	Ursus_americanus
ENSMODG00000008475	SNRNP200	100	99.064	ENSUMAG00000012385	SNRNP200	100	99.064	Ursus_maritimus
ENSMODG00000008475	SNRNP200	90	100.000	ENSVPAG00000006434	SNRNP200	69	100.000	Vicugna_pacos
ENSMODG00000008475	SNRNP200	100	98.832	ENSVVUG00000026247	SNRNP200	100	98.832	Vulpes_vulpes
ENSMODG00000008475	SNRNP200	100	94.296	ENSXETG00000001243	snrnp200	100	94.296	Xenopus_tropicalis
ENSMODG00000008475	SNRNP200	97	90.525	ENSXMAG00000002058	snrnp200	98	90.525	Xiphophorus_maculatus