EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSMODG00000009161 (Gene tree)
Gene ID
100017015
Gene Symbol
PUF60
Alias
FIR|RoBPI|SIAHBP1
Full Name
poly(U) binding splicing factor 60
Gene Type
protein_coding
Species
Monodelphis_domestica
Status
putative
Strand
Minus strand
Length
36809 bases
Position
chr3:434485508-434522316
Accession
100017015
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMODP00000011435RRM_1PF00076.227.9e-4412
ENSMODP00000011435RRM_1PF00076.227.9e-4422
ENSMODP00000011432RRM_1PF00076.228.9e-4412
ENSMODP00000011432RRM_1PF00076.228.9e-4422
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMODT00000011655PUF60-2021657-ENSMODP00000011435536 (aa)XP_007488764F7ADW1
ENSMODT00000011652PUF60-2011724-ENSMODP00000011432553 (aa)-F7ADX7
Gene Model
Click here to download ENSMODG00000009161's gene model file
Pathways
Pathway IDPathway NameSource
mdo03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000009161's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMODG00000009161PUF605230.636ENSMODG00000006222PABPC15430.636
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMODG00000009161PUF6010097.601ENSG00000179950PUF6010099.399Homo_sapiens
ENSMODG00000009161PUF609585.417ENSAPOG00000001713puf60b9985.417Acanthochromis_polyacanthus
ENSMODG00000009161PUF609995.153ENSAMEG00000006406PUF609994.973Ailuropoda_melanoleuca
ENSMODG00000009161PUF609376.775ENSACIG00000003263-9977.203Amphilophus_citrinellus
ENSMODG00000009161PUF609385.221ENSACIG00000021705puf60b10085.221Amphilophus_citrinellus
ENSMODG00000009161PUF609480.798ENSAOCG00000015558-9981.369Amphiprion_ocellaris
ENSMODG00000009161PUF609485.389ENSAOCG00000005395puf60b10086.180Amphiprion_ocellaris
ENSMODG00000009161PUF609482.975ENSAPEG00000011923puf60b9982.975Amphiprion_percula
ENSMODG00000009161PUF609375.397ENSAPEG00000001836-9976.667Amphiprion_percula
ENSMODG00000009161PUF609480.571ENSATEG00000006303-9980.952Anabas_testudineus
ENSMODG00000009161PUF609585.227ENSATEG00000001730puf60b9985.227Anabas_testudineus
ENSMODG00000009161PUF609498.084ENSAPLG00000010150PUF6010098.084Anas_platyrhynchos
ENSMODG00000009161PUF609496.183ENSACAG00000001645PUF609795.825Anolis_carolinensis
ENSMODG00000009161PUF6010096.448ENSANAG00000018626PUF6010098.837Aotus_nancymaae
ENSMODG00000009161PUF609385.221ENSACLG00000004462puf60b10085.221Astatotilapia_calliptera
ENSMODG00000009161PUF609485.127ENSAMXG00000036570puf60a9784.932Astyanax_mexicanus
ENSMODG00000009161PUF609376.735ENSAMXG00000041030puf60b10074.719Astyanax_mexicanus
ENSMODG00000009161PUF6010097.248ENSBTAG00000037493PUF609999.042Bos_taurus
ENSMODG00000009161PUF607849.062WBGene00004389rnp-68353.497Caenorhabditis_elegans
ENSMODG00000009161PUF6010096.892ENSCJAG00000021485PUF609899.042Callithrix_jacchus
ENSMODG00000009161PUF6010097.790ENSCAFG00000001400PUF6010097.790Canis_familiaris
ENSMODG00000009161PUF6010097.790ENSCAFG00020018754PUF6010097.790Canis_lupus_dingo
ENSMODG00000009161PUF609997.636ENSCHIG00000001618PUF609297.636Capra_hircus
ENSMODG00000009161PUF6010096.454ENSTSYG00000011912PUF6010099.225Carlito_syrichta
ENSMODG00000009161PUF609992.407ENSCPOG00000014613PUF609992.222Cavia_porcellus
ENSMODG00000009161PUF6010096.886ENSCCAG00000007744PUF6010096.886Cebus_capucinus
ENSMODG00000009161PUF6010097.601ENSCATG00000035405PUF6010097.601Cercocebus_atys
ENSMODG00000009161PUF6010097.258ENSCLAG00000009154PUF6010097.258Chinchilla_lanigera
ENSMODG00000009161PUF609398.837ENSCSAG00000008878PUF6010098.837Chlorocebus_sabaeus
ENSMODG00000009161PUF609498.084ENSCPBG00000005595PUF609898.084Chrysemys_picta_bellii
ENSMODG00000009161PUF609448.876ENSCING00000008436-9848.956Ciona_intestinalis
ENSMODG00000009161PUF605863.043ENSCING00000002156-8763.043Ciona_intestinalis
ENSMODG00000009161PUF609050.820ENSCSAVG00000004765-9750.412Ciona_savignyi
ENSMODG00000009161PUF609155.172ENSCSAVG00000001385-9954.808Ciona_savignyi
ENSMODG00000009161PUF608097.471ENSCANG00000041843PUF609999.277Colobus_angolensis_palliatus
ENSMODG00000009161PUF6010096.527ENSCGRG00001017442Puf6010096.527Cricetulus_griseus_chok1gshd
ENSMODG00000009161PUF609996.043ENSCGRG00000003717Puf609996.043Cricetulus_griseus_crigri
ENSMODG00000009161PUF609484.630ENSCSEG00000019887puf60b9384.440Cynoglossus_semilaevis
ENSMODG00000009161PUF609375.099ENSCSEG00000014845-8977.273Cynoglossus_semilaevis
ENSMODG00000009161PUF609384.261ENSCVAG00000009386puf60b10085.413Cyprinodon_variegatus
ENSMODG00000009161PUF608481.015ENSCVAG00000001560-9879.114Cyprinodon_variegatus
ENSMODG00000009161PUF609378.947ENSDARG00000001241puf60b9996.032Danio_rerio
ENSMODG00000009161PUF609386.364ENSDARG00000032175puf60a9994.043Danio_rerio
ENSMODG00000009161PUF609980.978ENSDNOG00000043278PUF609880.978Dasypus_novemcinctus
ENSMODG00000009161PUF609998.127ENSDORG00000004585Puf6010098.127Dipodomys_ordii
ENSMODG00000009161PUF609051.064FBgn0028577hfp8658.754Drosophila_melanogaster
ENSMODG00000009161PUF609562.651ENSEBUG00000014291puf60b8565.739Eptatretus_burgeri
ENSMODG00000009161PUF609172.634ENSEBUG00000005470-8872.222Eptatretus_burgeri
ENSMODG00000009161PUF6010097.790ENSEASG00005009695PUF6010097.790Equus_asinus_asinus
ENSMODG00000009161PUF609997.761ENSECAG00000024681PUF609997.932Equus_caballus
ENSMODG00000009161PUF609583.302ENSELUG00000006507puf60b9980.220Esox_lucius
ENSMODG00000009161PUF609385.996ENSELUG00000018443-9985.996Esox_lucius
ENSMODG00000009161PUF6010096.709ENSFCAG00000001045PUF6010098.837Felis_catus
ENSMODG00000009161PUF609684.717ENSFALG00000001136PUF609985.849Ficedula_albicollis
ENSMODG00000009161PUF6010096.892ENSFDAG00000017177PUF6010096.892Fukomys_damarensis
ENSMODG00000009161PUF608978.715ENSFHEG00000021687PUF6010079.550Fundulus_heteroclitus
ENSMODG00000009161PUF609483.871ENSFHEG00000020046puf60b10085.797Fundulus_heteroclitus
ENSMODG00000009161PUF609471.617ENSGMOG00000006392puf60b10070.865Gadus_morhua
ENSMODG00000009161PUF606298.547ENSGALG00000039901PUF609498.547Gallus_gallus
ENSMODG00000009161PUF609379.641ENSGAFG00000004334-9979.042Gambusia_affinis
ENSMODG00000009161PUF609483.112ENSGAFG00000021040puf60b10085.221Gambusia_affinis
ENSMODG00000009161PUF609470.000ENSGACG00000001484-10069.038Gasterosteus_aculeatus
ENSMODG00000009161PUF609473.157ENSGACG00000004717puf60b9872.486Gasterosteus_aculeatus
ENSMODG00000009161PUF609498.608ENSGAGG00000013289PUF609794.579Gopherus_agassizii
ENSMODG00000009161PUF6010097.601ENSGGOG00000004646PUF6010097.601Gorilla_gorilla
ENSMODG00000009161PUF609484.440ENSHBUG00000015118puf60b10085.221Haplochromis_burtoni
ENSMODG00000009161PUF609382.738ENSHBUG00000009634-10082.738Haplochromis_burtoni
ENSMODG00000009161PUF6010096.892ENSHGLG00000006111PUF6010096.892Heterocephalus_glaber_female
ENSMODG00000009161PUF6010096.892ENSHGLG00100012362PUF6010096.892Heterocephalus_glaber_male
ENSMODG00000009161PUF609266.798ENSHCOG00000000378-9965.038Hippocampus_comes
ENSMODG00000009161PUF609481.952ENSHCOG00000015541puf60b10081.550Hippocampus_comes
ENSMODG00000009161PUF609378.318ENSIPUG00000004660puf60b9978.788Ictalurus_punctatus
ENSMODG00000009161PUF609979.259ENSIPUG00000002453puf60a9982.231Ictalurus_punctatus
ENSMODG00000009161PUF6010097.849ENSSTOG00000025037PUF6010097.849Ictidomys_tridecemlineatus
ENSMODG00000009161PUF6010097.248ENSJJAG00000001076Puf6010097.248Jaculus_jaculus
ENSMODG00000009161PUF609384.645ENSKMAG00000016745puf60b10085.797Kryptolebias_marmoratus
ENSMODG00000009161PUF609377.883ENSKMAG00000010106-10075.373Kryptolebias_marmoratus
ENSMODG00000009161PUF609684.416ENSLBEG00000012505puf60b10084.416Labrus_bergylta
ENSMODG00000009161PUF606890.710ENSLACG00000005456PUF6010090.437Latimeria_chalumnae
ENSMODG00000009161PUF609590.114ENSLOCG00000010106puf60b9989.163Lepisosteus_oculatus
ENSMODG00000009161PUF609995.504ENSLAFG00000022929PUF6010095.504Loxodonta_africana
ENSMODG00000009161PUF6010097.601ENSMFAG00000043373PUF609998.851Macaca_fascicularis
ENSMODG00000009161PUF6010097.422ENSMMUG00000013558PUF6010097.422Macaca_mulatta
ENSMODG00000009161PUF6010097.601ENSMNEG00000031099PUF6010097.601Macaca_nemestrina
ENSMODG00000009161PUF609399.399ENSMLEG00000040009PUF6010099.399Mandrillus_leucophaeus
ENSMODG00000009161PUF609482.163ENSMAMG00000019476-9981.594Mastacembelus_armatus
ENSMODG00000009161PUF609584.774ENSMAMG00000010394puf60b10083.551Mastacembelus_armatus
ENSMODG00000009161PUF609481.404ENSMZEG00005019425-9981.404Maylandia_zebra
ENSMODG00000009161PUF609385.221ENSMZEG00005018515puf60b10085.221Maylandia_zebra
ENSMODG00000009161PUF609498.084ENSMGAG00000013070PUF609898.084Meleagris_gallopavo
ENSMODG00000009161PUF6010077.264ENSMAUG00000018549-10077.491Mesocricetus_auratus
ENSMODG00000009161PUF607295.588ENSMAUG00000014267-10095.588Mesocricetus_auratus
ENSMODG00000009161PUF6010097.846ENSMICG00000012226PUF609999.234Microcebus_murinus
ENSMODG00000009161PUF6010096.709ENSMOCG00000018780Puf6010096.709Microtus_ochrogaster
ENSMODG00000009161PUF609385.605ENSMMOG00000004217puf60b10085.605Mola_mola
ENSMODG00000009161PUF609575.246ENSMMOG00000018059-9976.712Mola_mola
ENSMODG00000009161PUF609480.076ENSMALG00000000200-9978.679Monopterus_albus
ENSMODG00000009161PUF609577.652ENSMALG00000006797puf60b9977.652Monopterus_albus
ENSMODG00000009161PUF6010096.527MGP_CAROLIEiJ_G0019910Puf6010096.527Mus_caroli
ENSMODG00000009161PUF6010096.527ENSMUSG00000002524Puf6010096.527Mus_musculus
ENSMODG00000009161PUF6010096.527MGP_PahariEiJ_G0019920Puf6010096.527Mus_pahari
ENSMODG00000009161PUF6010096.527MGP_SPRETEiJ_G0020812Puf6010096.527Mus_spretus
ENSMODG00000009161PUF609997.455ENSMPUG00000008137PUF609797.455Mustela_putorius_furo
ENSMODG00000009161PUF609997.818ENSMLUG00000000238-9897.818Myotis_lucifugus
ENSMODG00000009161PUF609495.644ENSMLUG00000013032-9895.644Myotis_lucifugus
ENSMODG00000009161PUF6010096.892ENSNGAG00000000712Puf6010099.031Nannospalax_galili
ENSMODG00000009161PUF609779.167ENSNBRG00000017223-9981.559Neolamprologus_brichardi
ENSMODG00000009161PUF607683.765ENSNBRG00000013047puf60b9783.765Neolamprologus_brichardi
ENSMODG00000009161PUF6010097.601ENSNLEG00000002156PUF6010097.601Nomascus_leucogenys
ENSMODG00000009161PUF607099.659ENSOPRG00000002147PUF607599.659Ochotona_princeps
ENSMODG00000009161PUF6074100.000ENSODEG00000014024-100100.000Octodon_degus
ENSMODG00000009161PUF609173.767ENSODEG00000015513-9970.998Octodon_degus
ENSMODG00000009161PUF609581.629ENSONIG00000014030-9981.629Oreochromis_niloticus
ENSMODG00000009161PUF609584.470ENSONIG00000006247puf60b9984.470Oreochromis_niloticus
ENSMODG00000009161PUF609278.125ENSOANG00000006962PUF609978.125Ornithorhynchus_anatinus
ENSMODG00000009161PUF609484.440ENSORLG00000012279puf60b10084.645Oryzias_latipes
ENSMODG00000009161PUF609378.409ENSORLG00000028655-9978.517Oryzias_latipes
ENSMODG00000009161PUF609478.302ENSORLG00020018144-9878.409Oryzias_latipes_hni
ENSMODG00000009161PUF609484.440ENSORLG00020007333puf6010084.645Oryzias_latipes_hni
ENSMODG00000009161PUF609478.558ENSORLG00015016833-9878.667Oryzias_latipes_hsok
ENSMODG00000009161PUF609483.554ENSORLG00015007718puf60b10084.512Oryzias_latipes_hsok
ENSMODG00000009161PUF609479.843ENSOMEG00000022185-9879.127Oryzias_melastigma
ENSMODG00000009161PUF609481.970ENSOMEG00000001643puf60b9983.232Oryzias_melastigma
ENSMODG00000009161PUF609996.774ENSOGAG00000006259PUF609996.774Otolemur_garnettii
ENSMODG00000009161PUF609596.558ENSOARG00000016235PUF609996.558Ovis_aries
ENSMODG00000009161PUF6010097.601ENSPPAG00000029933PUF6010097.601Pan_paniscus
ENSMODG00000009161PUF6010096.277ENSPPRG00000003257PUF6010099.399Panthera_pardus
ENSMODG00000009161PUF609997.196ENSPTIG00000009795PUF609996.718Panthera_tigris_altaica
ENSMODG00000009161PUF609997.566ENSPTRG00000043963-10097.004Pan_troglodytes
ENSMODG00000009161PUF6010097.417ENSPTRG00000020670PUF6010097.417Pan_troglodytes
ENSMODG00000009161PUF6010097.601ENSPANG00000021936PUF6010097.601Papio_anubis
ENSMODG00000009161PUF609487.033ENSPKIG00000012204puf60b10087.692Paramormyrops_kingsleyae
ENSMODG00000009161PUF609884.717ENSPKIG00000004295puf60a9992.647Paramormyrops_kingsleyae
ENSMODG00000009161PUF609597.897ENSPSIG00000004679PUF609997.897Pelodiscus_sinensis
ENSMODG00000009161PUF609383.969ENSPMGG00000013444puf60b9983.969Periophthalmus_magnuspinnatus
ENSMODG00000009161PUF6010096.709ENSPEMG00000008820Puf6010096.709Peromyscus_maniculatus_bairdii
ENSMODG00000009161PUF609599.426ENSPCIG00000020270PUF609999.232Phascolarctos_cinereus
ENSMODG00000009161PUF609380.347ENSPFOG00000011118-9780.695Poecilia_formosa
ENSMODG00000009161PUF609583.463ENSPFOG00000019217puf60b10084.630Poecilia_formosa
ENSMODG00000009161PUF609877.390ENSPLAG00000017025-9577.348Poecilia_latipinna
ENSMODG00000009161PUF609384.645ENSPLAG00000010754puf60b10085.797Poecilia_latipinna
ENSMODG00000009161PUF609380.347ENSPMEG00000009767-9577.716Poecilia_mexicana
ENSMODG00000009161PUF609483.871ENSPMEG00000000838puf60b10085.797Poecilia_mexicana
ENSMODG00000009161PUF609382.738ENSPREG00000005440puf60b10083.929Poecilia_reticulata
ENSMODG00000009161PUF607597.590ENSPPYG00000018951-9597.590Pongo_abelii
ENSMODG00000009161PUF607599.518ENSPCAG00000014837PUF609999.518Procavia_capensis
ENSMODG00000009161PUF6010096.970ENSPCOG00000027981PUF609999.042Propithecus_coquereli
ENSMODG00000009161PUF6093100.000ENSPVAG00000016167PUF6081100.000Pteropus_vampyrus
ENSMODG00000009161PUF609385.221ENSPNYG00000002556puf60b10085.221Pundamilia_nyererei
ENSMODG00000009161PUF609481.404ENSPNYG00000004273-9981.404Pundamilia_nyererei
ENSMODG00000009161PUF609480.079ENSPNAG00000019415puf60b9077.470Pygocentrus_nattereri
ENSMODG00000009161PUF609485.156ENSPNAG00000019909puf60a9984.961Pygocentrus_nattereri
ENSMODG00000009161PUF6010096.527ENSRNOG00000009960Puf6010096.527Rattus_norvegicus
ENSMODG00000009161PUF6010097.601ENSRBIG00000035274PUF6010097.601Rhinopithecus_bieti
ENSMODG00000009161PUF6010097.601ENSRROG00000029360PUF609998.851Rhinopithecus_roxellana
ENSMODG00000009161PUF609597.706ENSSBOG00000027089PUF609897.701Saimiri_boliviensis_boliviensis
ENSMODG00000009161PUF609198.603ENSSHAG00000006668PUF609698.603Sarcophilus_harrisii
ENSMODG00000009161PUF609382.510ENSSFOG00015019619puf60b9986.437Scleropages_formosus
ENSMODG00000009161PUF608986.519ENSSFOG00015019371puf60a9886.922Scleropages_formosus
ENSMODG00000009161PUF606992.580ENSSMAG00000016381puf60b7392.580Scophthalmus_maximus
ENSMODG00000009161PUF609479.771ENSSDUG00000007048-9879.962Seriola_dumerili
ENSMODG00000009161PUF609483.271ENSSDUG00000009935puf60b9984.646Seriola_dumerili
ENSMODG00000009161PUF609380.268ENSSLDG00000007366-9980.688Seriola_lalandi_dorsalis
ENSMODG00000009161PUF609684.015ENSSLDG00000024011puf60b10083.738Seriola_lalandi_dorsalis
ENSMODG00000009161PUF606186.431ENSSPUG00000013518PUF609485.757Sphenodon_punctatus
ENSMODG00000009161PUF609381.489ENSSPAG00000020285-10082.061Stegastes_partitus
ENSMODG00000009161PUF609482.625ENSSPAG00000012144puf60b10083.925Stegastes_partitus
ENSMODG00000009161PUF609997.566ENSSSCG00000038800PUF609899.208Sus_scrofa
ENSMODG00000009161PUF609494.828ENSTGUG00000012797-10094.828Taeniopygia_guttata
ENSMODG00000009161PUF609379.960ENSTRUG00000008843-10080.361Takifugu_rubripes
ENSMODG00000009161PUF609583.902ENSTRUG00000005420puf60b10082.430Takifugu_rubripes
ENSMODG00000009161PUF609583.902ENSTNIG00000013675puf60b10083.712Tetraodon_nigroviridis
ENSMODG00000009161PUF609577.438ENSTNIG00000003069-10077.438Tetraodon_nigroviridis
ENSMODG00000009161PUF605896.284ENSTBEG00000002751-9996.271Tupaia_belangeri
ENSMODG00000009161PUF607280.636ENSTBEG00000001899-10081.792Tupaia_belangeri
ENSMODG00000009161PUF609398.450ENSTTRG00000017088PUF6010098.450Tursiops_truncatus
ENSMODG00000009161PUF6010098.152ENSUAMG00000024917PUF6010098.152Ursus_americanus
ENSMODG00000009161PUF609694.518ENSUMAG00000000272PUF609992.909Ursus_maritimus
ENSMODG00000009161PUF609998.315ENSVVUG00000022527PUF6010099.225Vulpes_vulpes
ENSMODG00000009161PUF609593.893ENSXETG00000012469puf609994.841Xenopus_tropicalis
ENSMODG00000009161PUF609384.524ENSXCOG00000012355puf60b10085.714Xiphophorus_couchianus
ENSMODG00000009161PUF609480.512ENSXMAG00000010507-9979.724Xiphophorus_maculatus
ENSMODG00000009161PUF609483.871ENSXMAG00000001862puf60b10085.797Xiphophorus_maculatus

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