EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMODG00000009270 (Gene tree)
Gene ID: 100018808
Gene Symbol: SF3A1
Alias: PRPF21|Prp21|SAP114|SF3a120
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Minus strand
Length: 22123 bases
Position: chr3:519408103-519430225
Accession: 100018808
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000011581	PRP21_like_P	PF12230.8	2.6e-51	1	1
ENSMODP00000011581	Surp	PF01805.20	5.2e-46	1	2
ENSMODP00000011581	Surp	PF01805.20	5.2e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000011801	SF3A1-201	5849	-	ENSMODP00000011581	791 (aa)	XP_001365265	F7DA32

Gene Model

Click here to download ENSMODG00000009270's gene model file

Pathways

Pathway ID	Pathway Name	Source
mdo03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000009270's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000009270	SF3A1	100	97.478	ENSG00000099995	SF3A1	100	97.478	Homo_sapiens
ENSMODG00000009270	SF3A1	100	83.249	ENSAPOG00000020465	sf3a1	99	83.033	Acanthochromis_polyacanthus
ENSMODG00000009270	SF3A1	100	97.233	ENSAMEG00000007737	SF3A1	100	97.233	Ailuropoda_melanoleuca
ENSMODG00000009270	SF3A1	100	83.879	ENSACIG00000020672	sf3a1	99	83.805	Amphilophus_citrinellus
ENSMODG00000009270	SF3A1	100	82.997	ENSAOCG00000003060	sf3a1	99	83.162	Amphiprion_ocellaris
ENSMODG00000009270	SF3A1	100	83.123	ENSAPEG00000010735	sf3a1	99	83.162	Amphiprion_percula
ENSMODG00000009270	SF3A1	97	85.696	ENSATEG00000021201	sf3a1	97	83.979	Anabas_testudineus
ENSMODG00000009270	SF3A1	95	95.106	ENSAPLG00000009057	SF3A1	99	94.148	Anas_platyrhynchos
ENSMODG00000009270	SF3A1	100	86.560	ENSACAG00000009415	SF3A1	100	87.300	Anolis_carolinensis
ENSMODG00000009270	SF3A1	100	97.982	ENSANAG00000032045	SF3A1	100	97.982	Aotus_nancymaae
ENSMODG00000009270	SF3A1	100	84.111	ENSACLG00000012622	sf3a1	99	84.170	Astatotilapia_calliptera
ENSMODG00000009270	SF3A1	99	83.418	ENSAMXG00000005382	sf3a1	99	84.427	Astyanax_mexicanus
ENSMODG00000009270	SF3A1	100	98.235	ENSBTAG00000003390	SF3A1	100	98.235	Bos_taurus
ENSMODG00000009270	SF3A1	84	43.423	WBGene00004188	prp-21	90	44.762	Caenorhabditis_elegans
ENSMODG00000009270	SF3A1	100	98.108	ENSCJAG00000010370	SF3A1	100	98.108	Callithrix_jacchus
ENSMODG00000009270	SF3A1	100	97.730	ENSCAFG00000012559	SF3A1	100	97.730	Canis_familiaris
ENSMODG00000009270	SF3A1	100	97.730	ENSCAFG00020000838	SF3A1	100	97.730	Canis_lupus_dingo
ENSMODG00000009270	SF3A1	100	98.108	ENSCHIG00000018642	SF3A1	100	98.108	Capra_hircus
ENSMODG00000009270	SF3A1	100	97.856	ENSTSYG00000004739	SF3A1	100	97.856	Carlito_syrichta
ENSMODG00000009270	SF3A1	94	79.840	ENSCAPG00000015414	SF3A1	98	79.439	Cavia_aperea
ENSMODG00000009270	SF3A1	100	97.856	ENSCPOG00000014589	SF3A1	100	97.856	Cavia_porcellus
ENSMODG00000009270	SF3A1	100	97.982	ENSCCAG00000032006	SF3A1	100	97.982	Cebus_capucinus
ENSMODG00000009270	SF3A1	100	97.856	ENSCATG00000029241	SF3A1	100	97.856	Cercocebus_atys
ENSMODG00000009270	SF3A1	100	97.352	ENSCLAG00000006508	SF3A1	100	97.352	Chinchilla_lanigera
ENSMODG00000009270	SF3A1	100	97.730	ENSCSAG00000009470	SF3A1	100	97.730	Chlorocebus_sabaeus
ENSMODG00000009270	SF3A1	61	98.155	ENSCHOG00000005201	SF3A1	69	98.155	Choloepus_hoffmanni
ENSMODG00000009270	SF3A1	100	92.172	ENSCPBG00000007595	SF3A1	100	91.919	Chrysemys_picta_bellii
ENSMODG00000009270	SF3A1	94	52.053	ENSCING00000008526	-	67	57.795	Ciona_intestinalis
ENSMODG00000009270	SF3A1	96	51.410	ENSCSAVG00000005608	-	92	62.712	Ciona_savignyi
ENSMODG00000009270	SF3A1	100	97.730	ENSCANG00000033564	SF3A1	100	97.730	Colobus_angolensis_palliatus
ENSMODG00000009270	SF3A1	100	97.226	ENSCGRG00001008933	Sf3a1	100	97.226	Cricetulus_griseus_chok1gshd
ENSMODG00000009270	SF3A1	100	97.226	ENSCGRG00000006127	Sf3a1	100	97.226	Cricetulus_griseus_crigri
ENSMODG00000009270	SF3A1	100	81.635	ENSCSEG00000010792	sf3a1	98	81.664	Cynoglossus_semilaevis
ENSMODG00000009270	SF3A1	100	82.872	ENSCVAG00000004560	sf3a1	98	83.485	Cyprinodon_variegatus
ENSMODG00000009270	SF3A1	100	83.375	ENSDARG00000041887	sf3a1	98	85.046	Danio_rerio
ENSMODG00000009270	SF3A1	100	97.358	ENSDNOG00000010629	SF3A1	100	97.358	Dasypus_novemcinctus
ENSMODG00000009270	SF3A1	100	97.982	ENSDORG00000005613	Sf3a1	100	97.982	Dipodomys_ordii
ENSMODG00000009270	SF3A1	82	60.474	FBgn0266917	Sf3a1	83	61.397	Drosophila_melanogaster
ENSMODG00000009270	SF3A1	84	96.108	ENSETEG00000017194	SF3A1	100	93.875	Echinops_telfairi
ENSMODG00000009270	SF3A1	100	66.232	ENSEBUG00000001285	sf3a1	95	67.618	Eptatretus_burgeri
ENSMODG00000009270	SF3A1	100	98.108	ENSEASG00005010254	SF3A1	100	98.108	Equus_asinus_asinus
ENSMODG00000009270	SF3A1	100	98.108	ENSECAG00000023962	SF3A1	100	98.108	Equus_caballus
ENSMODG00000009270	SF3A1	73	92.486	ENSEEUG00000003159	SF3A1	83	92.486	Erinaceus_europaeus
ENSMODG00000009270	SF3A1	100	82.434	ENSELUG00000022578	sf3a1	97	83.464	Esox_lucius
ENSMODG00000009270	SF3A1	100	97.982	ENSFCAG00000011932	SF3A1	100	97.982	Felis_catus
ENSMODG00000009270	SF3A1	95	93.907	ENSFALG00000006944	SF3A1	100	92.172	Ficedula_albicollis
ENSMODG00000009270	SF3A1	100	97.604	ENSFDAG00000009560	SF3A1	100	97.604	Fukomys_damarensis
ENSMODG00000009270	SF3A1	100	83.627	ENSFHEG00000010866	sf3a1	98	83.528	Fundulus_heteroclitus
ENSMODG00000009270	SF3A1	100	80.779	ENSGMOG00000016024	sf3a1	99	81.806	Gadus_morhua
ENSMODG00000009270	SF3A1	95	95.099	ENSGALG00000007937	SF3A1	100	92.929	Gallus_gallus
ENSMODG00000009270	SF3A1	100	82.872	ENSGAFG00000009111	sf3a1	98	83.009	Gambusia_affinis
ENSMODG00000009270	SF3A1	100	82.197	ENSGACG00000011893	sf3a1	97	82.727	Gasterosteus_aculeatus
ENSMODG00000009270	SF3A1	96	92.358	ENSGAGG00000000762	SF3A1	99	92.095	Gopherus_agassizii
ENSMODG00000009270	SF3A1	100	97.478	ENSGGOG00000012631	SF3A1	100	97.478	Gorilla_gorilla
ENSMODG00000009270	SF3A1	100	84.111	ENSHBUG00000015795	sf3a1	99	84.170	Haplochromis_burtoni
ENSMODG00000009270	SF3A1	100	97.856	ENSHGLG00000007907	SF3A1	100	97.856	Heterocephalus_glaber_female
ENSMODG00000009270	SF3A1	100	97.856	ENSHGLG00100013799	SF3A1	100	97.856	Heterocephalus_glaber_male
ENSMODG00000009270	SF3A1	100	80.377	ENSHCOG00000015423	sf3a1	98	80.704	Hippocampus_comes
ENSMODG00000009270	SF3A1	97	82.147	ENSIPUG00000002470	sf3a1	99	81.630	Ictalurus_punctatus
ENSMODG00000009270	SF3A1	100	98.235	ENSSTOG00000013892	SF3A1	100	98.235	Ictidomys_tridecemlineatus
ENSMODG00000009270	SF3A1	100	97.607	ENSJJAG00000022566	Sf3a1	100	97.607	Jaculus_jaculus
ENSMODG00000009270	SF3A1	100	83.249	ENSKMAG00000002400	sf3a1	99	82.905	Kryptolebias_marmoratus
ENSMODG00000009270	SF3A1	100	82.620	ENSLBEG00000022974	sf3a1	98	83.225	Labrus_bergylta
ENSMODG00000009270	SF3A1	100	85.678	ENSLACG00000003565	SF3A1	97	88.411	Latimeria_chalumnae
ENSMODG00000009270	SF3A1	100	85.427	ENSLOCG00000008251	sf3a1	97	87.386	Lepisosteus_oculatus
ENSMODG00000009270	SF3A1	97	62.354	ENSLAFG00000026032	-	97	61.449	Loxodonta_africana
ENSMODG00000009270	SF3A1	100	97.478	ENSLAFG00000000448	SF3A1	100	97.478	Loxodonta_africana
ENSMODG00000009270	SF3A1	100	97.604	ENSMFAG00000031979	SF3A1	100	97.604	Macaca_fascicularis
ENSMODG00000009270	SF3A1	100	97.604	ENSMMUG00000005547	SF3A1	100	97.604	Macaca_mulatta
ENSMODG00000009270	SF3A1	100	97.478	ENSMNEG00000037229	SF3A1	100	97.478	Macaca_nemestrina
ENSMODG00000009270	SF3A1	100	97.730	ENSMLEG00000041908	SF3A1	100	97.730	Mandrillus_leucophaeus
ENSMODG00000009270	SF3A1	98	85.290	ENSMAMG00000006460	sf3a1	96	84.176	Mastacembelus_armatus
ENSMODG00000009270	SF3A1	100	84.111	ENSMZEG00005009633	sf3a1	99	84.170	Maylandia_zebra
ENSMODG00000009270	SF3A1	95	95.099	ENSMGAG00000001330	SF3A1	99	94.141	Meleagris_gallopavo
ENSMODG00000009270	SF3A1	92	93.579	ENSMAUG00000020317	Sf3a1	94	93.443	Mesocricetus_auratus
ENSMODG00000009270	SF3A1	100	97.604	ENSMICG00000010038	SF3A1	100	97.604	Microcebus_murinus
ENSMODG00000009270	SF3A1	100	97.478	ENSMOCG00000008438	Sf3a1	100	97.478	Microtus_ochrogaster
ENSMODG00000009270	SF3A1	100	81.108	ENSMMOG00000015588	sf3a1	98	81.443	Mola_mola
ENSMODG00000009270	SF3A1	100	83.985	ENSMALG00000000148	sf3a1	99	84.196	Monopterus_albus
ENSMODG00000009270	SF3A1	100	96.847	MGP_CAROLIEiJ_G0016029	Sf3a1	100	96.847	Mus_caroli
ENSMODG00000009270	SF3A1	100	96.847	ENSMUSG00000002129	Sf3a1	100	96.847	Mus_musculus
ENSMODG00000009270	SF3A1	100	96.721	MGP_PahariEiJ_G0016862	Sf3a1	100	96.721	Mus_pahari
ENSMODG00000009270	SF3A1	100	96.847	MGP_SPRETEiJ_G0016870	Sf3a1	100	96.847	Mus_spretus
ENSMODG00000009270	SF3A1	100	97.982	ENSMPUG00000013144	SF3A1	100	97.982	Mustela_putorius_furo
ENSMODG00000009270	SF3A1	100	98.108	ENSMLUG00000002139	SF3A1	100	98.108	Myotis_lucifugus
ENSMODG00000009270	SF3A1	100	97.604	ENSNGAG00000016977	Sf3a1	100	97.604	Nannospalax_galili
ENSMODG00000009270	SF3A1	100	84.111	ENSNBRG00000016642	sf3a1	96	85.903	Neolamprologus_brichardi
ENSMODG00000009270	SF3A1	100	97.730	ENSNLEG00000003686	SF3A1	100	97.730	Nomascus_leucogenys
ENSMODG00000009270	SF3A1	96	89.710	ENSMEUG00000008741	SF3A1	100	89.710	Notamacropus_eugenii
ENSMODG00000009270	SF3A1	100	97.226	ENSOPRG00000016636	SF3A1	100	97.226	Ochotona_princeps
ENSMODG00000009270	SF3A1	100	97.601	ENSODEG00000002571	SF3A1	100	97.601	Octodon_degus
ENSMODG00000009270	SF3A1	100	82.728	ENSONIG00000010848	sf3a1	99	83.548	Oreochromis_niloticus
ENSMODG00000009270	SF3A1	100	97.604	ENSOCUG00000007633	SF3A1	100	97.604	Oryctolagus_cuniculus
ENSMODG00000009270	SF3A1	96	81.711	ENSORLG00000013050	sf3a1	97	84.131	Oryzias_latipes
ENSMODG00000009270	SF3A1	99	80.076	ENSORLG00020003236	sf3a1	92	84.268	Oryzias_latipes_hni
ENSMODG00000009270	SF3A1	100	82.219	ENSORLG00015017411	sf3a1	97	84.424	Oryzias_latipes_hsok
ENSMODG00000009270	SF3A1	100	82.346	ENSOMEG00000013362	sf3a1	99	82.946	Oryzias_melastigma
ENSMODG00000009270	SF3A1	100	97.478	ENSOGAG00000012931	SF3A1	100	97.478	Otolemur_garnettii
ENSMODG00000009270	SF3A1	100	96.469	ENSOARG00000006849	SF3A1	100	96.469	Ovis_aries
ENSMODG00000009270	SF3A1	100	96.469	ENSPPAG00000041790	SF3A1	100	96.469	Pan_paniscus
ENSMODG00000009270	SF3A1	100	97.982	ENSPPRG00000004391	SF3A1	100	97.982	Panthera_pardus
ENSMODG00000009270	SF3A1	97	97.927	ENSPTIG00000000844	SF3A1	100	97.927	Panthera_tigris_altaica
ENSMODG00000009270	SF3A1	100	97.478	ENSPTRG00000014240	SF3A1	100	97.478	Pan_troglodytes
ENSMODG00000009270	SF3A1	100	97.730	ENSPANG00000020772	SF3A1	100	97.730	Papio_anubis
ENSMODG00000009270	SF3A1	83	95.604	ENSPSIG00000012803	SF3A1	95	95.604	Pelodiscus_sinensis
ENSMODG00000009270	SF3A1	96	84.031	ENSPMGG00000023096	sf3a1	100	83.879	Periophthalmus_magnuspinnatus
ENSMODG00000009270	SF3A1	100	97.478	ENSPEMG00000009494	Sf3a1	100	97.478	Peromyscus_maniculatus_bairdii
ENSMODG00000009270	SF3A1	69	76.951	ENSPMAG00000007139	-	89	80.000	Petromyzon_marinus
ENSMODG00000009270	SF3A1	100	99.115	ENSPCIG00000022692	SF3A1	100	99.115	Phascolarctos_cinereus
ENSMODG00000009270	SF3A1	100	74.340	ENSPFOG00000016768	sf3a1	93	77.687	Poecilia_formosa
ENSMODG00000009270	SF3A1	100	82.872	ENSPLAG00000017268	sf3a1	97	83.399	Poecilia_latipinna
ENSMODG00000009270	SF3A1	96	84.940	ENSPMEG00000019811	sf3a1	98	83.560	Poecilia_mexicana
ENSMODG00000009270	SF3A1	100	82.997	ENSPREG00000010347	sf3a1	98	83.139	Poecilia_reticulata
ENSMODG00000009270	SF3A1	100	97.730	ENSPPYG00000011707	SF3A1	100	97.730	Pongo_abelii
ENSMODG00000009270	SF3A1	57	97.642	ENSPCAG00000003266	SF3A1	57	97.642	Procavia_capensis
ENSMODG00000009270	SF3A1	100	97.856	ENSPCOG00000026630	SF3A1	100	97.856	Propithecus_coquereli
ENSMODG00000009270	SF3A1	100	93.569	ENSPVAG00000017719	SF3A1	94	96.779	Pteropus_vampyrus
ENSMODG00000009270	SF3A1	100	84.111	ENSPNYG00000018706	sf3a1	99	84.170	Pundamilia_nyererei
ENSMODG00000009270	SF3A1	98	82.781	ENSPNAG00000003721	sf3a1	99	83.892	Pygocentrus_nattereri
ENSMODG00000009270	SF3A1	100	97.100	ENSRNOG00000005218	Sf3a1	100	97.100	Rattus_norvegicus
ENSMODG00000009270	SF3A1	100	97.730	ENSRBIG00000032167	SF3A1	100	97.730	Rhinopithecus_bieti
ENSMODG00000009270	SF3A1	100	97.730	ENSRROG00000044908	SF3A1	100	97.730	Rhinopithecus_roxellana
ENSMODG00000009270	SF3A1	93	97.954	ENSSBOG00000021960	SF3A1	100	98.080	Saimiri_boliviensis_boliviensis
ENSMODG00000009270	SF3A1	97	97.017	ENSSHAG00000003666	SF3A1	98	97.017	Sarcophilus_harrisii
ENSMODG00000009270	SF3A1	100	83.312	ENSSFOG00015004579	sf3a1	97	85.436	Scleropages_formosus
ENSMODG00000009270	SF3A1	100	81.612	ENSSMAG00000004275	sf3a1	99	81.338	Scophthalmus_maximus
ENSMODG00000009270	SF3A1	100	83.753	ENSSDUG00000022219	sf3a1	99	82.519	Seriola_dumerili
ENSMODG00000009270	SF3A1	100	83.753	ENSSLDG00000012642	sf3a1	99	82.519	Seriola_lalandi_dorsalis
ENSMODG00000009270	SF3A1	97	94.430	ENSSARG00000005960	SF3A1	100	94.430	Sorex_araneus
ENSMODG00000009270	SF3A1	96	93.126	ENSSPUG00000018863	SF3A1	100	92.394	Sphenodon_punctatus
ENSMODG00000009270	SF3A1	100	84.383	ENSSPAG00000011856	sf3a1	99	83.162	Stegastes_partitus
ENSMODG00000009270	SF3A1	100	98.108	ENSSSCG00000010002	SF3A1	100	98.108	Sus_scrofa
ENSMODG00000009270	SF3A1	95	94.848	ENSTGUG00000010547	SF3A1	99	93.896	Taeniopygia_guttata
ENSMODG00000009270	SF3A1	100	81.360	ENSTRUG00000006118	sf3a1	99	81.008	Takifugu_rubripes
ENSMODG00000009270	SF3A1	64	80.669	ENSTNIG00000005713	sf3a1	89	85.714	Tetraodon_nigroviridis
ENSMODG00000009270	SF3A1	100	90.668	ENSTBEG00000012771	SF3A1	100	90.542	Tupaia_belangeri
ENSMODG00000009270	SF3A1	100	97.607	ENSTTRG00000001535	SF3A1	100	97.607	Tursiops_truncatus
ENSMODG00000009270	SF3A1	99	96.696	ENSUAMG00000006750	SF3A1	99	96.696	Ursus_americanus
ENSMODG00000009270	SF3A1	99	96.684	ENSUMAG00000016665	SF3A1	99	96.684	Ursus_maritimus
ENSMODG00000009270	SF3A1	100	97.730	ENSVVUG00000003075	SF3A1	100	97.730	Vulpes_vulpes
ENSMODG00000009270	SF3A1	100	86.558	ENSXETG00000016144	sf3a1	97	88.036	Xenopus_tropicalis
ENSMODG00000009270	SF3A1	100	82.620	ENSXCOG00000015653	sf3a1	97	83.399	Xiphophorus_couchianus
ENSMODG00000009270	SF3A1	100	82.746	ENSXMAG00000002753	sf3a1	97	83.529	Xiphophorus_maculatus