EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMODG00000009442 (Gene tree)
Gene ID: 100029824
Gene Symbol: EDC3
Alias: FLJ21128|LSM16|YJDC|YJEFN2|hYjeF_N2-15q23
Full Name: enhancer of mRNA decapping 3
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Minus strand
Length: 63610 bases
Position: chr1:23062406-23126015
Accession: 100029824
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000011800	FDF	PF09532.10	1.3e-17	1	1
ENSMODP00000011800	LSM14	PF12701.7	1.7e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000012023	EDC3-201	1890	-	ENSMODP00000011800	508 (aa)	XP_001379481	F7FZN0

Gene Model

Click here to download ENSMODG00000009442's gene model file

Pathways

Pathway ID	Pathway Name	Source
mdo03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000009442's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000009442	EDC3	100	92.717	ENSG00000179151	EDC3	100	98.148	Homo_sapiens
ENSMODG00000009442	EDC3	99	55.750	ENSAPOG00000008655	EDC3	99	55.750	Acanthochromis_polyacanthus
ENSMODG00000009442	EDC3	100	69.608	ENSAPOG00000010791	edc3	100	69.727	Acanthochromis_polyacanthus
ENSMODG00000009442	EDC3	100	91.732	ENSAMEG00000008963	EDC3	100	91.732	Ailuropoda_melanoleuca
ENSMODG00000009442	EDC3	99	60.234	ENSACIG00000005330	EDC3	99	59.454	Amphilophus_citrinellus
ENSMODG00000009442	EDC3	100	68.369	ENSACIG00000017751	edc3	100	68.369	Amphilophus_citrinellus
ENSMODG00000009442	EDC3	99	57.588	ENSAOCG00000009103	-	99	57.588	Amphiprion_ocellaris
ENSMODG00000009442	EDC3	100	69.804	ENSAOCG00000005431	edc3	100	69.804	Amphiprion_ocellaris
ENSMODG00000009442	EDC3	99	57.895	ENSAPEG00000007841	EDC3	99	57.895	Amphiprion_percula
ENSMODG00000009442	EDC3	100	69.804	ENSAPEG00000000968	edc3	100	69.804	Amphiprion_percula
ENSMODG00000009442	EDC3	100	70.138	ENSATEG00000015505	edc3	100	70.138	Anabas_testudineus
ENSMODG00000009442	EDC3	100	57.692	ENSATEG00000004205	-	100	57.692	Anabas_testudineus
ENSMODG00000009442	EDC3	90	89.011	ENSAPLG00000008957	EDC3	100	89.011	Anas_platyrhynchos
ENSMODG00000009442	EDC3	78	87.406	ENSACAG00000000460	-	100	87.406	Anolis_carolinensis
ENSMODG00000009442	EDC3	100	92.913	ENSANAG00000024078	EDC3	100	92.913	Aotus_nancymaae
ENSMODG00000009442	EDC3	99	58.789	ENSACLG00000018776	-	99	58.789	Astatotilapia_calliptera
ENSMODG00000009442	EDC3	100	67.976	ENSACLG00000007232	edc3	100	67.976	Astatotilapia_calliptera
ENSMODG00000009442	EDC3	100	70.543	ENSAMXG00000001589	edc3	100	70.543	Astyanax_mexicanus
ENSMODG00000009442	EDC3	100	92.913	ENSBTAG00000007308	EDC3	100	92.913	Bos_taurus
ENSMODG00000009442	EDC3	100	92.913	ENSCJAG00000017681	EDC3	100	92.913	Callithrix_jacchus
ENSMODG00000009442	EDC3	100	92.126	ENSCAFG00000017935	EDC3	100	92.126	Canis_familiaris
ENSMODG00000009442	EDC3	100	92.126	ENSCAFG00020003909	EDC3	100	92.126	Canis_lupus_dingo
ENSMODG00000009442	EDC3	100	92.717	ENSCHIG00000023658	EDC3	100	92.717	Capra_hircus
ENSMODG00000009442	EDC3	100	92.520	ENSTSYG00000004822	EDC3	100	92.520	Carlito_syrichta
ENSMODG00000009442	EDC3	100	91.535	ENSCPOG00000015595	EDC3	100	91.535	Cavia_porcellus
ENSMODG00000009442	EDC3	100	93.110	ENSCCAG00000021663	EDC3	100	93.110	Cebus_capucinus
ENSMODG00000009442	EDC3	100	93.307	ENSCATG00000037511	EDC3	100	93.307	Cercocebus_atys
ENSMODG00000009442	EDC3	100	90.748	ENSCLAG00000005700	EDC3	100	90.748	Chinchilla_lanigera
ENSMODG00000009442	EDC3	100	93.307	ENSCSAG00000014239	EDC3	100	93.307	Chlorocebus_sabaeus
ENSMODG00000009442	EDC3	100	91.142	ENSCPBG00000024239	EDC3	100	91.142	Chrysemys_picta_bellii
ENSMODG00000009442	EDC3	100	38.654	ENSCING00000022142	-	99	38.803	Ciona_intestinalis
ENSMODG00000009442	EDC3	100	93.307	ENSCANG00000028699	EDC3	100	93.307	Colobus_angolensis_palliatus
ENSMODG00000009442	EDC3	100	92.717	ENSCGRG00001013874	Edc3	100	92.717	Cricetulus_griseus_chok1gshd
ENSMODG00000009442	EDC3	100	92.717	ENSCGRG00000011885	Edc3	100	92.717	Cricetulus_griseus_crigri
ENSMODG00000009442	EDC3	99	69.685	ENSCSEG00000012996	edc3	99	69.685	Cynoglossus_semilaevis
ENSMODG00000009442	EDC3	99	70.079	ENSCVAG00000008023	edc3	100	69.941	Cyprinodon_variegatus
ENSMODG00000009442	EDC3	99	69.141	ENSDARG00000051931	edc3	99	69.531	Danio_rerio
ENSMODG00000009442	EDC3	100	81.202	ENSDNOG00000030661	EDC3	100	81.202	Dasypus_novemcinctus
ENSMODG00000009442	EDC3	64	96.296	ENSETEG00000002398	-	64	96.296	Echinops_telfairi
ENSMODG00000009442	EDC3	100	92.126	ENSEASG00005005071	EDC3	100	92.126	Equus_asinus_asinus
ENSMODG00000009442	EDC3	100	92.126	ENSECAG00000017994	EDC3	100	92.126	Equus_caballus
ENSMODG00000009442	EDC3	100	66.472	ENSELUG00000005794	edc3	100	66.472	Esox_lucius
ENSMODG00000009442	EDC3	100	63.281	ENSELUG00000007607	EDC3	100	63.281	Esox_lucius
ENSMODG00000009442	EDC3	100	91.929	ENSFCAG00000002014	EDC3	100	91.929	Felis_catus
ENSMODG00000009442	EDC3	98	87.174	ENSFALG00000004543	EDC3	96	87.174	Ficedula_albicollis
ENSMODG00000009442	EDC3	100	90.551	ENSFDAG00000012582	EDC3	100	90.551	Fukomys_damarensis
ENSMODG00000009442	EDC3	99	69.941	ENSFHEG00000009375	edc3	100	69.804	Fundulus_heteroclitus
ENSMODG00000009442	EDC3	100	69.336	ENSGMOG00000002715	edc3	100	69.336	Gadus_morhua
ENSMODG00000009442	EDC3	100	90.551	ENSGALG00000040181	EDC3	100	90.551	Gallus_gallus
ENSMODG00000009442	EDC3	100	68.566	ENSGAFG00000014433	edc3	100	68.431	Gambusia_affinis
ENSMODG00000009442	EDC3	99	57.115	ENSGACG00000014671	EDC3	99	57.505	Gasterosteus_aculeatus
ENSMODG00000009442	EDC3	100	68.566	ENSGACG00000009783	edc3	100	68.566	Gasterosteus_aculeatus
ENSMODG00000009442	EDC3	100	90.945	ENSGAGG00000023477	EDC3	100	90.945	Gopherus_agassizii
ENSMODG00000009442	EDC3	100	92.913	ENSGGOG00000003552	EDC3	100	92.913	Gorilla_gorilla
ENSMODG00000009442	EDC3	100	67.976	ENSHBUG00000003635	edc3	100	67.976	Haplochromis_burtoni
ENSMODG00000009442	EDC3	99	58.789	ENSHBUG00000020817	EDC3	99	58.789	Haplochromis_burtoni
ENSMODG00000009442	EDC3	100	68.493	ENSHCOG00000016834	edc3	100	68.493	Hippocampus_comes
ENSMODG00000009442	EDC3	99	69.981	ENSIPUG00000005695	edc3	100	69.981	Ictalurus_punctatus
ENSMODG00000009442	EDC3	100	93.110	ENSSTOG00000013936	EDC3	100	93.110	Ictidomys_tridecemlineatus
ENSMODG00000009442	EDC3	100	91.535	ENSJJAG00000008074	Edc3	100	91.535	Jaculus_jaculus
ENSMODG00000009442	EDC3	100	68.959	ENSKMAG00000001243	edc3	100	69.276	Kryptolebias_marmoratus
ENSMODG00000009442	EDC3	99	55.336	ENSKMAG00000001987	EDC3	99	55.336	Kryptolebias_marmoratus
ENSMODG00000009442	EDC3	100	69.412	ENSLBEG00000013435	edc3	99	69.412	Labrus_bergylta
ENSMODG00000009442	EDC3	99	57.977	ENSLBEG00000017984	EDC3	99	57.977	Labrus_bergylta
ENSMODG00000009442	EDC3	100	79.612	ENSLACG00000014149	EDC3	100	79.612	Latimeria_chalumnae
ENSMODG00000009442	EDC3	100	68.616	ENSLOCG00000014625	edc3	100	68.421	Lepisosteus_oculatus
ENSMODG00000009442	EDC3	100	92.126	ENSLAFG00000002992	EDC3	100	92.126	Loxodonta_africana
ENSMODG00000009442	EDC3	100	93.110	ENSMFAG00000043074	EDC3	100	93.110	Macaca_fascicularis
ENSMODG00000009442	EDC3	100	93.110	ENSMMUG00000011071	EDC3	100	93.110	Macaca_mulatta
ENSMODG00000009442	EDC3	100	93.110	ENSMNEG00000035316	EDC3	100	93.110	Macaca_nemestrina
ENSMODG00000009442	EDC3	100	93.307	ENSMLEG00000030372	EDC3	100	93.307	Mandrillus_leucophaeus
ENSMODG00000009442	EDC3	100	69.548	ENSMAMG00000000505	edc3	100	69.548	Mastacembelus_armatus
ENSMODG00000009442	EDC3	100	56.420	ENSMAMG00000005423	-	100	56.420	Mastacembelus_armatus
ENSMODG00000009442	EDC3	100	67.976	ENSMZEG00005004892	edc3	100	67.976	Maylandia_zebra
ENSMODG00000009442	EDC3	99	58.984	ENSMZEG00005005654	EDC3	99	58.984	Maylandia_zebra
ENSMODG00000009442	EDC3	100	89.567	ENSMGAG00000002617	EDC3	100	89.567	Meleagris_gallopavo
ENSMODG00000009442	EDC3	100	92.126	ENSMICG00000043190	EDC3	100	92.126	Microcebus_murinus
ENSMODG00000009442	EDC3	100	92.520	ENSMOCG00000016205	Edc3	100	92.520	Microtus_ochrogaster
ENSMODG00000009442	EDC3	99	69.352	ENSMMOG00000012278	edc3	99	69.291	Mola_mola
ENSMODG00000009442	EDC3	100	69.548	ENSMALG00000008658	edc3	100	69.548	Monopterus_albus
ENSMODG00000009442	EDC3	100	91.732	MGP_CAROLIEiJ_G0032280	Edc3	100	96.923	Mus_caroli
ENSMODG00000009442	EDC3	100	91.732	ENSMUSG00000038957	Edc3	100	96.923	Mus_musculus
ENSMODG00000009442	EDC3	100	91.929	MGP_PahariEiJ_G0015146	Edc3	100	96.923	Mus_pahari
ENSMODG00000009442	EDC3	100	91.929	MGP_SPRETEiJ_G0033420	Edc3	100	96.923	Mus_spretus
ENSMODG00000009442	EDC3	100	92.520	ENSMPUG00000017293	EDC3	100	92.520	Mustela_putorius_furo
ENSMODG00000009442	EDC3	100	91.961	ENSMLUG00000016382	EDC3	100	91.961	Myotis_lucifugus
ENSMODG00000009442	EDC3	100	91.929	ENSNGAG00000010923	Edc3	100	91.929	Nannospalax_galili
ENSMODG00000009442	EDC3	100	68.173	ENSNBRG00000002434	edc3	100	68.173	Neolamprologus_brichardi
ENSMODG00000009442	EDC3	99	58.789	ENSNBRG00000007881	EDC3	99	58.789	Neolamprologus_brichardi
ENSMODG00000009442	EDC3	100	83.071	ENSNLEG00000014577	EDC3	100	83.071	Nomascus_leucogenys
ENSMODG00000009442	EDC3	100	97.441	ENSMEUG00000009077	EDC3	100	97.441	Notamacropus_eugenii
ENSMODG00000009442	EDC3	79	94.444	ENSOPRG00000009540	-	79	94.444	Ochotona_princeps
ENSMODG00000009442	EDC3	100	68.369	ENSONIG00000008434	edc3	100	68.369	Oreochromis_niloticus
ENSMODG00000009442	EDC3	99	59.844	ENSONIG00000002932	-	99	59.844	Oreochromis_niloticus
ENSMODG00000009442	EDC3	78	88.917	ENSOCUG00000017740	EDC3	86	88.917	Oryctolagus_cuniculus
ENSMODG00000009442	EDC3	100	67.780	ENSORLG00000004883	edc3	100	67.780	Oryzias_latipes
ENSMODG00000009442	EDC3	99	56.556	ENSORLG00000014399	-	98	56.556	Oryzias_latipes
ENSMODG00000009442	EDC3	99	56.078	ENSORLG00020019446	-	99	56.078	Oryzias_latipes_hni
ENSMODG00000009442	EDC3	100	67.969	ENSORLG00020012262	edc3	100	67.969	Oryzias_latipes_hni
ENSMODG00000009442	EDC3	100	68.164	ENSORLG00015005634	edc3	100	68.164	Oryzias_latipes_hsok
ENSMODG00000009442	EDC3	99	56.360	ENSORLG00015017635	-	95	56.360	Oryzias_latipes_hsok
ENSMODG00000009442	EDC3	99	56.863	ENSOMEG00000017354	EDC3	99	56.863	Oryzias_melastigma
ENSMODG00000009442	EDC3	100	69.727	ENSOMEG00000014026	edc3	100	69.727	Oryzias_melastigma
ENSMODG00000009442	EDC3	100	92.520	ENSOGAG00000014441	EDC3	100	92.520	Otolemur_garnettii
ENSMODG00000009442	EDC3	100	91.945	ENSOARG00000003476	EDC3	100	92.338	Ovis_aries
ENSMODG00000009442	EDC3	100	92.913	ENSPPAG00000040143	EDC3	100	92.913	Pan_paniscus
ENSMODG00000009442	EDC3	100	92.323	ENSPPRG00000006257	EDC3	100	92.323	Panthera_pardus
ENSMODG00000009442	EDC3	100	92.323	ENSPTIG00000017424	EDC3	100	92.323	Panthera_tigris_altaica
ENSMODG00000009442	EDC3	100	92.913	ENSPTRG00000007279	EDC3	100	92.913	Pan_troglodytes
ENSMODG00000009442	EDC3	100	93.307	ENSPANG00000015997	EDC3	100	93.307	Papio_anubis
ENSMODG00000009442	EDC3	99	66.275	ENSPKIG00000019810	EDC3	99	66.275	Paramormyrops_kingsleyae
ENSMODG00000009442	EDC3	100	67.969	ENSPKIG00000004416	edc3	100	68.945	Paramormyrops_kingsleyae
ENSMODG00000009442	EDC3	100	84.646	ENSPSIG00000008474	EDC3	100	84.646	Pelodiscus_sinensis
ENSMODG00000009442	EDC3	100	67.710	ENSPMGG00000007223	edc3	100	67.710	Periophthalmus_magnuspinnatus
ENSMODG00000009442	EDC3	100	92.717	ENSPEMG00000015260	Edc3	100	92.717	Peromyscus_maniculatus_bairdii
ENSMODG00000009442	EDC3	100	96.063	ENSPCIG00000006276	EDC3	70	96.063	Phascolarctos_cinereus
ENSMODG00000009442	EDC3	100	69.352	ENSPFOG00000012204	edc3	100	69.352	Poecilia_formosa
ENSMODG00000009442	EDC3	100	69.352	ENSPLAG00000014420	edc3	100	69.352	Poecilia_latipinna
ENSMODG00000009442	EDC3	100	69.352	ENSPMEG00000023289	edc3	100	69.352	Poecilia_mexicana
ENSMODG00000009442	EDC3	100	69.352	ENSPREG00000016022	edc3	100	69.352	Poecilia_reticulata
ENSMODG00000009442	EDC3	100	91.732	ENSPPYG00000006642	EDC3	100	91.732	Pongo_abelii
ENSMODG00000009442	EDC3	88	98.148	ENSPCAG00000002802	EDC3	88	98.148	Procavia_capensis
ENSMODG00000009442	EDC3	100	92.717	ENSPCOG00000013364	EDC3	100	92.717	Propithecus_coquereli
ENSMODG00000009442	EDC3	100	91.732	ENSPVAG00000014733	EDC3	100	91.732	Pteropus_vampyrus
ENSMODG00000009442	EDC3	100	67.976	ENSPNYG00000021797	edc3	100	67.976	Pundamilia_nyererei
ENSMODG00000009442	EDC3	99	58.789	ENSPNYG00000009669	EDC3	99	58.789	Pundamilia_nyererei
ENSMODG00000009442	EDC3	100	69.884	ENSPNAG00000019657	edc3	100	69.884	Pygocentrus_nattereri
ENSMODG00000009442	EDC3	99	92.277	ENSRNOG00000019579	Edc3	99	92.277	Rattus_norvegicus
ENSMODG00000009442	EDC3	100	93.307	ENSRBIG00000019488	EDC3	100	93.307	Rhinopithecus_bieti
ENSMODG00000009442	EDC3	100	93.307	ENSRROG00000034959	EDC3	100	93.307	Rhinopithecus_roxellana
ENSMODG00000009442	EDC3	100	93.110	ENSSBOG00000004896	EDC3	100	93.110	Saimiri_boliviensis_boliviensis
ENSMODG00000009442	EDC3	96	97.137	ENSSHAG00000015075	EDC3	95	97.137	Sarcophilus_harrisii
ENSMODG00000009442	EDC3	100	64.314	ENSSFOG00015002439	edc3	100	65.370	Scleropages_formosus
ENSMODG00000009442	EDC3	99	70.793	ENSSFOG00015016939	edc3	99	71.289	Scleropages_formosus
ENSMODG00000009442	EDC3	100	68.824	ENSSMAG00000010695	edc3	100	69.155	Scophthalmus_maximus
ENSMODG00000009442	EDC3	99	56.371	ENSSMAG00000010176	-	99	56.371	Scophthalmus_maximus
ENSMODG00000009442	EDC3	99	59.375	ENSSDUG00000007671	EDC3	99	59.375	Seriola_dumerili
ENSMODG00000009442	EDC3	100	69.216	ENSSDUG00000021844	edc3	100	69.216	Seriola_dumerili
ENSMODG00000009442	EDC3	100	69.216	ENSSLDG00000022046	edc3	100	69.216	Seriola_lalandi_dorsalis
ENSMODG00000009442	EDC3	81	91.935	ENSSARG00000003907	EDC3	80	91.935	Sorex_araneus
ENSMODG00000009442	EDC3	100	90.551	ENSSPUG00000008232	EDC3	100	90.551	Sphenodon_punctatus
ENSMODG00000009442	EDC3	100	70.196	ENSSPAG00000010009	edc3	100	70.196	Stegastes_partitus
ENSMODG00000009442	EDC3	99	57.422	ENSSPAG00000020327	EDC3	99	57.422	Stegastes_partitus
ENSMODG00000009442	EDC3	100	92.323	ENSSSCG00000001903	EDC3	100	92.323	Sus_scrofa
ENSMODG00000009442	EDC3	100	90.748	ENSTGUG00000004007	EDC3	100	90.748	Taeniopygia_guttata
ENSMODG00000009442	EDC3	100	70.138	ENSTRUG00000017078	edc3	100	70.138	Takifugu_rubripes
ENSMODG00000009442	EDC3	100	69.472	ENSTNIG00000016047	edc3	100	69.472	Tetraodon_nigroviridis
ENSMODG00000009442	EDC3	100	92.323	ENSTTRG00000007990	EDC3	100	92.323	Tursiops_truncatus
ENSMODG00000009442	EDC3	100	91.732	ENSUAMG00000026710	-	100	91.732	Ursus_americanus
ENSMODG00000009442	EDC3	100	91.732	ENSUMAG00000005006	EDC3	96	91.732	Ursus_maritimus
ENSMODG00000009442	EDC3	79	85.185	ENSVPAG00000003499	-	79	85.185	Vicugna_pacos
ENSMODG00000009442	EDC3	100	92.126	ENSVVUG00000018601	EDC3	100	92.126	Vulpes_vulpes
ENSMODG00000009442	EDC3	68	82.184	ENSXETG00000010622	edc3	99	83.333	Xenopus_tropicalis
ENSMODG00000009442	EDC3	100	69.548	ENSXMAG00000007377	edc3	100	69.548	Xiphophorus_maculatus