EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMODG00000009676 (Gene tree)
Gene ID: 100027192
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Minus strand
Length: 184836 bases
Position: chr1:95543715-95728550
Accession: 16060
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000012096	TruB_N	PF01509.18	1.5e-51	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000012320	TRUB1-201	1514	-	ENSMODP00000012096	362 (aa)	-	F6SH34

Gene Model

Click here to download ENSMODG00000009676's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000009676's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMODG00000009676	TRUB1	70	31.164	ENSMODG00000005940	TRUB2	97	31.164

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000009676	TRUB1	81	80.743	ENSG00000165832	TRUB1	82	82.517	Homo_sapiens
ENSMODG00000009676	TRUB1	67	69.672	ENSAPOG00000020565	trub1	89	69.672	Acanthochromis_polyacanthus
ENSMODG00000009676	TRUB1	82	80.602	ENSAMEG00000014931	TRUB1	82	82.353	Ailuropoda_melanoleuca
ENSMODG00000009676	TRUB1	69	63.052	ENSACIG00000003060	trub1	81	63.934	Amphilophus_citrinellus
ENSMODG00000009676	TRUB1	67	69.672	ENSAOCG00000017188	trub1	89	69.672	Amphiprion_ocellaris
ENSMODG00000009676	TRUB1	69	68.273	ENSAPEG00000015209	trub1	89	69.262	Amphiprion_percula
ENSMODG00000009676	TRUB1	69	68.110	ENSATEG00000023291	trub1	86	69.710	Anabas_testudineus
ENSMODG00000009676	TRUB1	78	78.648	ENSAPLG00000006808	TRUB1	97	79.630	Anas_platyrhynchos
ENSMODG00000009676	TRUB1	77	72.563	ENSACAG00000009282	TRUB1	97	72.862	Anolis_carolinensis
ENSMODG00000009676	TRUB1	81	81.633	ENSANAG00000022870	TRUB1	81	83.451	Aotus_nancymaae
ENSMODG00000009676	TRUB1	69	67.331	ENSACLG00000000823	trub1	88	68.852	Astatotilapia_calliptera
ENSMODG00000009676	TRUB1	69	69.076	ENSAMXG00000015845	trub1	82	70.082	Astyanax_mexicanus
ENSMODG00000009676	TRUB1	81	80.405	ENSBTAG00000012955	TRUB1	81	82.168	Bos_taurus
ENSMODG00000009676	TRUB1	81	81.419	ENSCJAG00000047815	TRUB1	81	83.217	Callithrix_jacchus
ENSMODG00000009676	TRUB1	81	82.095	ENSCAFG00000011688	TRUB1	82	83.916	Canis_familiaris
ENSMODG00000009676	TRUB1	81	82.095	ENSCAFG00020013237	TRUB1	82	83.916	Canis_lupus_dingo
ENSMODG00000009676	TRUB1	81	80.405	ENSCHIG00000020884	TRUB1	86	82.168	Capra_hircus
ENSMODG00000009676	TRUB1	81	80.743	ENSTSYG00000000446	TRUB1	81	82.517	Carlito_syrichta
ENSMODG00000009676	TRUB1	70	70.751	ENSCAPG00000017088	TRUB1	99	70.751	Cavia_aperea
ENSMODG00000009676	TRUB1	55	81.500	ENSCPOG00000030129	-	72	86.486	Cavia_porcellus
ENSMODG00000009676	TRUB1	52	85.106	ENSCPOG00000040236	-	75	87.363	Cavia_porcellus
ENSMODG00000009676	TRUB1	81	81.419	ENSCCAG00000028842	TRUB1	81	83.217	Cebus_capucinus
ENSMODG00000009676	TRUB1	81	81.419	ENSCATG00000033431	TRUB1	82	83.217	Cercocebus_atys
ENSMODG00000009676	TRUB1	52	85.185	ENSCLAG00000008664	TRUB1	75	87.363	Chinchilla_lanigera
ENSMODG00000009676	TRUB1	81	81.419	ENSCSAG00000004891	TRUB1	82	83.217	Chlorocebus_sabaeus
ENSMODG00000009676	TRUB1	81	69.863	ENSCHOG00000011931	TRUB1	81	71.277	Choloepus_hoffmanni
ENSMODG00000009676	TRUB1	78	80.986	ENSCPBG00000003051	TRUB1	94	83.088	Chrysemys_picta_bellii
ENSMODG00000009676	TRUB1	81	81.419	ENSCANG00000029445	TRUB1	82	83.217	Colobus_angolensis_palliatus
ENSMODG00000009676	TRUB1	70	78.740	ENSCGRG00001016772	-	85	78.516	Cricetulus_griseus_chok1gshd
ENSMODG00000009676	TRUB1	77	72.143	ENSCGRG00001010322	-	77	72.378	Cricetulus_griseus_chok1gshd
ENSMODG00000009676	TRUB1	77	80.000	ENSCGRG00000010806	Trub1	87	80.420	Cricetulus_griseus_crigri
ENSMODG00000009676	TRUB1	71	63.424	ENSCSEG00000011261	trub1	79	65.984	Cynoglossus_semilaevis
ENSMODG00000009676	TRUB1	70	67.063	ENSCVAG00000008791	trub1	75	68.443	Cyprinodon_variegatus
ENSMODG00000009676	TRUB1	79	63.509	ENSDARG00000053805	trub1	92	65.441	Danio_rerio
ENSMODG00000009676	TRUB1	81	77.891	ENSDNOG00000001069	TRUB1	81	79.298	Dasypus_novemcinctus
ENSMODG00000009676	TRUB1	76	82.014	ENSDORG00000010431	Trub1	82	82.394	Dipodomys_ordii
ENSMODG00000009676	TRUB1	62	83.099	ENSETEG00000009183	TRUB1	62	85.294	Echinops_telfairi
ENSMODG00000009676	TRUB1	81	80.405	ENSEASG00005014739	TRUB1	82	82.168	Equus_asinus_asinus
ENSMODG00000009676	TRUB1	81	80.405	ENSECAG00000007177	TRUB1	82	82.168	Equus_caballus
ENSMODG00000009676	TRUB1	93	63.988	ENSEEUG00000013993	TRUB1	80	71.329	Erinaceus_europaeus
ENSMODG00000009676	TRUB1	68	71.020	ENSELUG00000000502	trub1	85	71.311	Esox_lucius
ENSMODG00000009676	TRUB1	82	80.808	ENSFCAG00000031927	TRUB1	77	85.926	Felis_catus
ENSMODG00000009676	TRUB1	67	79.424	ENSFALG00000002232	TRUB1	93	79.424	Ficedula_albicollis
ENSMODG00000009676	TRUB1	52	86.772	ENSFDAG00000008140	TRUB1	75	89.011	Fukomys_damarensis
ENSMODG00000009676	TRUB1	71	64.729	ENSFHEG00000004016	trub1	84	67.623	Fundulus_heteroclitus
ENSMODG00000009676	TRUB1	76	77.091	ENSGALG00000009091	TRUB1	96	77.574	Gallus_gallus
ENSMODG00000009676	TRUB1	69	64.800	ENSGAFG00000009193	trub1	86	65.164	Gambusia_affinis
ENSMODG00000009676	TRUB1	54	69.072	ENSGACG00000015387	trub1	95	69.072	Gasterosteus_aculeatus
ENSMODG00000009676	TRUB1	76	84.000	ENSGAGG00000009758	TRUB1	78	83.824	Gopherus_agassizii
ENSMODG00000009676	TRUB1	81	81.081	ENSGGOG00000004583	TRUB1	82	82.867	Gorilla_gorilla
ENSMODG00000009676	TRUB1	71	65.900	ENSHBUG00000016787	trub1	88	68.852	Haplochromis_burtoni
ENSMODG00000009676	TRUB1	81	78.157	ENSHGLG00000015314	TRUB1	82	79.371	Heterocephalus_glaber_female
ENSMODG00000009676	TRUB1	52	85.185	ENSHGLG00100009183	TRUB1	77	87.363	Heterocephalus_glaber_male
ENSMODG00000009676	TRUB1	71	65.637	ENSHCOG00000017877	trub1	88	68.443	Hippocampus_comes
ENSMODG00000009676	TRUB1	75	65.934	ENSIPUG00000017559	trub1	93	67.547	Ictalurus_punctatus
ENSMODG00000009676	TRUB1	81	80.205	ENSSTOG00000003641	TRUB1	85	81.979	Ictidomys_tridecemlineatus
ENSMODG00000009676	TRUB1	77	82.734	ENSJJAG00000011800	Trub1	79	84.701	Jaculus_jaculus
ENSMODG00000009676	TRUB1	71	65.759	ENSKMAG00000006232	trub1	88	68.443	Kryptolebias_marmoratus
ENSMODG00000009676	TRUB1	71	65.759	ENSLBEG00000026722	trub1	85	68.852	Labrus_bergylta
ENSMODG00000009676	TRUB1	79	73.702	ENSLACG00000014885	TRUB1	93	75.269	Latimeria_chalumnae
ENSMODG00000009676	TRUB1	78	69.258	ENSLOCG00000012979	trub1	92	70.741	Lepisosteus_oculatus
ENSMODG00000009676	TRUB1	71	85.992	ENSLAFG00000015452	TRUB1	84	79.522	Loxodonta_africana
ENSMODG00000009676	TRUB1	81	81.081	ENSMFAG00000031767	TRUB1	82	82.867	Macaca_fascicularis
ENSMODG00000009676	TRUB1	81	81.419	ENSMMUG00000001902	TRUB1	82	83.217	Macaca_mulatta
ENSMODG00000009676	TRUB1	81	76.351	ENSMNEG00000044646	TRUB1	81	77.972	Macaca_nemestrina
ENSMODG00000009676	TRUB1	81	81.419	ENSMLEG00000042655	TRUB1	82	83.217	Mandrillus_leucophaeus
ENSMODG00000009676	TRUB1	69	67.331	ENSMZEG00005024095	trub1	88	68.852	Maylandia_zebra
ENSMODG00000009676	TRUB1	75	77.289	ENSMGAG00000011135	TRUB1	93	77.778	Meleagris_gallopavo
ENSMODG00000009676	TRUB1	73	80.303	ENSMAUG00000011101	Trub1	80	80.741	Mesocricetus_auratus
ENSMODG00000009676	TRUB1	81	81.570	ENSMICG00000016324	TRUB1	81	83.392	Microcebus_murinus
ENSMODG00000009676	TRUB1	77	78.929	ENSMOCG00000017759	Trub1	86	79.371	Microtus_ochrogaster
ENSMODG00000009676	TRUB1	73	82.707	MGP_CAROLIEiJ_G0023100	Trub1	79	82.836	Mus_caroli
ENSMODG00000009676	TRUB1	73	81.955	ENSMUSG00000025086	Trub1	79	82.090	Mus_musculus
ENSMODG00000009676	TRUB1	77	81.295	MGP_PahariEiJ_G0014588	Trub1	79	82.836	Mus_pahari
ENSMODG00000009676	TRUB1	73	81.955	MGP_SPRETEiJ_G0024021	Trub1	79	82.090	Mus_spretus
ENSMODG00000009676	TRUB1	82	82.828	ENSMPUG00000003556	TRUB1	82	84.669	Mustela_putorius_furo
ENSMODG00000009676	TRUB1	87	77.882	ENSMLUG00000017686	TRUB1	84	83.217	Myotis_lucifugus
ENSMODG00000009676	TRUB1	77	81.786	ENSNGAG00000018682	Trub1	78	83.704	Nannospalax_galili
ENSMODG00000009676	TRUB1	70	66.667	ENSNBRG00000023393	trub1	87	69.262	Neolamprologus_brichardi
ENSMODG00000009676	TRUB1	81	81.081	ENSNLEG00000016345	TRUB1	82	82.867	Nomascus_leucogenys
ENSMODG00000009676	TRUB1	56	100.000	ENSMEUG00000006603	TRUB1	74	100.000	Notamacropus_eugenii
ENSMODG00000009676	TRUB1	81	77.474	ENSOPRG00000009371	TRUB1	83	78.322	Ochotona_princeps
ENSMODG00000009676	TRUB1	81	77.474	ENSODEG00000010854	TRUB1	82	78.322	Octodon_degus
ENSMODG00000009676	TRUB1	69	67.331	ENSONIG00000007249	trub1	89	68.852	Oreochromis_niloticus
ENSMODG00000009676	TRUB1	78	84.155	ENSOANG00000001556	TRUB1	92	84.588	Ornithorhynchus_anatinus
ENSMODG00000009676	TRUB1	81	78.378	ENSOCUG00000009456	TRUB1	83	79.720	Oryctolagus_cuniculus
ENSMODG00000009676	TRUB1	67	69.835	ENSORLG00000029719	trub1	87	69.835	Oryzias_latipes
ENSMODG00000009676	TRUB1	67	69.421	ENSORLG00020016767	trub1	86	69.421	Oryzias_latipes_hni
ENSMODG00000009676	TRUB1	67	69.421	ENSORLG00015014728	trub1	87	69.421	Oryzias_latipes_hsok
ENSMODG00000009676	TRUB1	70	67.063	ENSOMEG00000014556	trub1	85	68.595	Oryzias_melastigma
ENSMODG00000009676	TRUB1	81	81.419	ENSOGAG00000015895	TRUB1	82	83.217	Otolemur_garnettii
ENSMODG00000009676	TRUB1	81	78.405	ENSOARG00000015591	TRUB1	83	79.863	Ovis_aries
ENSMODG00000009676	TRUB1	81	81.081	ENSPPAG00000043645	TRUB1	82	82.867	Pan_paniscus
ENSMODG00000009676	TRUB1	82	80.135	ENSPPRG00000007096	TRUB1	77	85.185	Panthera_pardus
ENSMODG00000009676	TRUB1	82	80.471	ENSPTIG00000006378	TRUB1	77	85.556	Panthera_tigris_altaica
ENSMODG00000009676	TRUB1	81	81.081	ENSPTRG00000002964	TRUB1	82	82.867	Pan_troglodytes
ENSMODG00000009676	TRUB1	81	81.419	ENSPANG00000020712	TRUB1	82	83.217	Papio_anubis
ENSMODG00000009676	TRUB1	76	81.522	ENSPSIG00000012877	TRUB1	93	81.618	Pelodiscus_sinensis
ENSMODG00000009676	TRUB1	70	63.780	ENSPMGG00000000075	trub1	96	60.440	Periophthalmus_magnuspinnatus
ENSMODG00000009676	TRUB1	77	80.000	ENSPEMG00000011156	Trub1	79	81.481	Peromyscus_maniculatus_bairdii
ENSMODG00000009676	TRUB1	79	98.606	ENSPCIG00000009729	TRUB1	78	98.606	Phascolarctos_cinereus
ENSMODG00000009676	TRUB1	71	65.625	ENSPFOG00000009950	trub1	89	67.213	Poecilia_formosa
ENSMODG00000009676	TRUB1	74	62.547	ENSPLAG00000013855	trub1	86	67.213	Poecilia_latipinna
ENSMODG00000009676	TRUB1	71	65.625	ENSPMEG00000009064	trub1	88	67.213	Poecilia_mexicana
ENSMODG00000009676	TRUB1	70	66.667	ENSPREG00000003343	trub1	88	68.033	Poecilia_reticulata
ENSMODG00000009676	TRUB1	81	80.743	ENSPPYG00000002676	TRUB1	82	82.517	Pongo_abelii
ENSMODG00000009676	TRUB1	81	73.649	ENSPCAG00000008427	TRUB1	81	74.476	Procavia_capensis
ENSMODG00000009676	TRUB1	81	75.427	ENSPCOG00000024360	TRUB1	80	77.032	Propithecus_coquereli
ENSMODG00000009676	TRUB1	58	87.678	ENSPVAG00000007575	TRUB1	76	90.547	Pteropus_vampyrus
ENSMODG00000009676	TRUB1	69	67.331	ENSPNYG00000018614	trub1	88	68.852	Pundamilia_nyererei
ENSMODG00000009676	TRUB1	71	59.533	ENSPNAG00000006881	trub1	87	58.582	Pygocentrus_nattereri
ENSMODG00000009676	TRUB1	77	80.935	ENSRNOG00000017321	Trub1	79	82.463	Rattus_norvegicus
ENSMODG00000009676	TRUB1	81	70.608	ENSRBIG00000033423	TRUB1	80	72.028	Rhinopithecus_bieti
ENSMODG00000009676	TRUB1	81	81.419	ENSRROG00000033902	TRUB1	82	83.217	Rhinopithecus_roxellana
ENSMODG00000009676	TRUB1	81	81.419	ENSSBOG00000024237	TRUB1	81	83.217	Saimiri_boliviensis_boliviensis
ENSMODG00000009676	TRUB1	70	98.833	ENSSHAG00000009346	TRUB1	86	98.833	Sarcophilus_harrisii
ENSMODG00000009676	TRUB1	70	70.196	ENSSFOG00015022124	trub1	83	72.727	Scleropages_formosus
ENSMODG00000009676	TRUB1	71	66.148	ENSSMAG00000001020	trub1	87	69.262	Scophthalmus_maximus
ENSMODG00000009676	TRUB1	66	69.038	ENSSDUG00000016414	trub1	88	69.262	Seriola_dumerili
ENSMODG00000009676	TRUB1	66	69.456	ENSSLDG00000015486	trub1	88	69.672	Seriola_lalandi_dorsalis
ENSMODG00000009676	TRUB1	77	80.287	ENSSPUG00000001642	TRUB1	93	81.250	Sphenodon_punctatus
ENSMODG00000009676	TRUB1	69	69.076	ENSSPAG00000001217	trub1	88	70.492	Stegastes_partitus
ENSMODG00000009676	TRUB1	81	79.054	ENSSSCG00000010653	TRUB1	82	81.119	Sus_scrofa
ENSMODG00000009676	TRUB1	75	79.259	ENSTGUG00000010971	TRUB1	96	79.259	Taeniopygia_guttata
ENSMODG00000009676	TRUB1	65	67.932	ENSTBEG00000002880	TRUB1	93	67.932	Tupaia_belangeri
ENSMODG00000009676	TRUB1	58	88.152	ENSTTRG00000005767	TRUB1	77	91.045	Tursiops_truncatus
ENSMODG00000009676	TRUB1	82	82.492	ENSUAMG00000024876	TRUB1	82	84.321	Ursus_americanus
ENSMODG00000009676	TRUB1	81	82.373	ENSUMAG00000002411	TRUB1	85	83.972	Ursus_maritimus
ENSMODG00000009676	TRUB1	81	81.356	ENSVPAG00000005507	TRUB1	82	83.158	Vicugna_pacos
ENSMODG00000009676	TRUB1	81	82.095	ENSVVUG00000010085	TRUB1	69	83.916	Vulpes_vulpes
ENSMODG00000009676	TRUB1	73	67.547	ENSXETG00000023828	trub1	97	66.667	Xenopus_tropicalis
ENSMODG00000009676	TRUB1	70	64.822	ENSXCOG00000017847	trub1	86	66.116	Xiphophorus_couchianus
ENSMODG00000009676	TRUB1	71	64.844	ENSXMAG00000014701	trub1	88	66.393	Xiphophorus_maculatus