EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMODG00000010622 (Gene tree)
Gene ID: 100013042
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Minus strand
Length: 186375 bases
Position: chr2:517594275-517780649
Accession: 17809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000013305	EST1	PF10374.9	2.2e-14	1	1
ENSMODP00000013305	EST1_DNA_bind	PF10373.9	6.2e-62	1	1
ENSMODP00000013305	PIN_4	PF13638.6	2.1e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000013550	SMG6-201	9138	-	ENSMODP00000013305	1411 (aa)	-	F7DPA4

Gene Model

Click here to download ENSMODG00000010622's gene model file

Pathways

Pathway ID	Pathway Name	Source
mdo03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000010622's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000010622	SMG6	100	85.513	ENSG00000070366	SMG6	100	95.108	Homo_sapiens
ENSMODG00000010622	SMG6	83	55.153	ENSAPOG00000019448	smg6	74	56.235	Acanthochromis_polyacanthus
ENSMODG00000010622	SMG6	100	86.428	ENSAMEG00000007632	SMG6	100	86.428	Ailuropoda_melanoleuca
ENSMODG00000010622	SMG6	83	54.710	ENSAOCG00000002630	smg6	74	55.512	Amphiprion_ocellaris
ENSMODG00000010622	SMG6	83	54.788	ENSAPEG00000019101	smg6	74	55.747	Amphiprion_percula
ENSMODG00000010622	SMG6	83	54.786	ENSATEG00000006483	smg6	73	55.349	Anabas_testudineus
ENSMODG00000010622	SMG6	87	58.327	ENSACAG00000011783	SMG6	99	58.976	Anolis_carolinensis
ENSMODG00000010622	SMG6	100	85.513	ENSANAG00000035760	SMG6	100	85.513	Aotus_nancymaae
ENSMODG00000010622	SMG6	72	59.578	ENSACLG00000005288	smg6	80	56.003	Astatotilapia_calliptera
ENSMODG00000010622	SMG6	69	63.015	ENSAMXG00000017326	smg6	98	51.190	Astyanax_mexicanus
ENSMODG00000010622	SMG6	100	86.076	ENSBTAG00000000267	SMG6	100	86.076	Bos_taurus
ENSMODG00000010622	SMG6	100	85.795	ENSCJAG00000001820	SMG6	100	85.795	Callithrix_jacchus
ENSMODG00000010622	SMG6	100	86.146	ENSCAFG00000019260	SMG6	100	86.146	Canis_familiaris
ENSMODG00000010622	SMG6	100	86.146	ENSCAFG00020009770	SMG6	100	86.146	Canis_lupus_dingo
ENSMODG00000010622	SMG6	100	85.865	ENSCHIG00000021998	SMG6	100	85.865	Capra_hircus
ENSMODG00000010622	SMG6	100	85.373	ENSTSYG00000003406	SMG6	100	95.108	Carlito_syrichta
ENSMODG00000010622	SMG6	90	81.265	ENSCAPG00000016197	SMG6	99	81.265	Cavia_aperea
ENSMODG00000010622	SMG6	100	83.556	ENSCPOG00000014878	SMG6	98	90.476	Cavia_porcellus
ENSMODG00000010622	SMG6	100	85.302	ENSCCAG00000035801	SMG6	100	85.302	Cebus_capucinus
ENSMODG00000010622	SMG6	100	86.287	ENSCATG00000031956	SMG6	100	86.287	Cercocebus_atys
ENSMODG00000010622	SMG6	100	85.513	ENSCLAG00000006748	SMG6	95	92.511	Chinchilla_lanigera
ENSMODG00000010622	SMG6	100	86.217	ENSCSAG00000013800	SMG6	100	86.217	Chlorocebus_sabaeus
ENSMODG00000010622	SMG6	57	95.522	ENSCHOG00000005024	-	73	95.522	Choloepus_hoffmanni
ENSMODG00000010622	SMG6	100	73.050	ENSCPBG00000020369	SMG6	100	73.677	Chrysemys_picta_bellii
ENSMODG00000010622	SMG6	98	85.848	ENSCANG00000031764	SMG6	100	95.108	Colobus_angolensis_palliatus
ENSMODG00000010622	SMG6	55	77.962	ENSCGRG00001019595	Smg6	100	77.962	Cricetulus_griseus_chok1gshd
ENSMODG00000010622	SMG6	98	78.720	ENSCGRG00000007782	Smg6	100	78.864	Cricetulus_griseus_crigri
ENSMODG00000010622	SMG6	83	58.318	ENSCSEG00000012757	smg6	90	52.385	Cynoglossus_semilaevis
ENSMODG00000010622	SMG6	72	58.702	ENSCVAG00000012789	smg6	89	54.319	Cyprinodon_variegatus
ENSMODG00000010622	SMG6	100	54.244	ENSDARG00000100481	smg6	100	48.322	Danio_rerio
ENSMODG00000010622	SMG6	100	85.443	ENSDNOG00000048283	SMG6	100	85.443	Dasypus_novemcinctus
ENSMODG00000010622	SMG6	96	95.788	ENSDORG00000016614	Smg6	100	95.788	Dipodomys_ordii
ENSMODG00000010622	SMG6	93	95.238	ENSETEG00000016790	SMG6	93	95.238	Echinops_telfairi
ENSMODG00000010622	SMG6	79	49.488	ENSEBUG00000005059	smg6	74	49.860	Eptatretus_burgeri
ENSMODG00000010622	SMG6	99	86.299	ENSEASG00005009318	SMG6	99	86.299	Equus_asinus_asinus
ENSMODG00000010622	SMG6	99	86.088	ENSECAG00000006519	SMG6	99	86.088	Equus_caballus
ENSMODG00000010622	SMG6	100	75.316	ENSEEUG00000003493	SMG6	100	75.316	Erinaceus_europaeus
ENSMODG00000010622	SMG6	72	59.982	ENSELUG00000005934	smg6	67	56.436	Esox_lucius
ENSMODG00000010622	SMG6	100	86.639	ENSFCAG00000028817	SMG6	100	86.639	Felis_catus
ENSMODG00000010622	SMG6	98	72.721	ENSFALG00000006538	SMG6	100	72.863	Ficedula_albicollis
ENSMODG00000010622	SMG6	100	85.443	ENSFDAG00000015106	SMG6	96	90.830	Fukomys_damarensis
ENSMODG00000010622	SMG6	87	52.849	ENSFHEG00000013282	smg6	79	53.144	Fundulus_heteroclitus
ENSMODG00000010622	SMG6	53	67.136	ENSGMOG00000019077	smg6	58	67.136	Gadus_morhua
ENSMODG00000010622	SMG6	100	71.724	ENSGALG00000003108	SMG6	98	72.253	Gallus_gallus
ENSMODG00000010622	SMG6	83	54.437	ENSGAFG00000000379	smg6	74	54.538	Gambusia_affinis
ENSMODG00000010622	SMG6	74	60.294	ENSGACG00000020521	smg6	99	53.635	Gasterosteus_aculeatus
ENSMODG00000010622	SMG6	98	72.792	ENSGAGG00000025617	SMG6	100	73.362	Gopherus_agassizii
ENSMODG00000010622	SMG6	100	86.287	ENSGGOG00000017156	SMG6	100	86.287	Gorilla_gorilla
ENSMODG00000010622	SMG6	72	59.707	ENSHBUG00000021311	smg6	74	55.748	Haplochromis_burtoni
ENSMODG00000010622	SMG6	100	84.902	ENSHGLG00000012882	SMG6	96	91.266	Heterocephalus_glaber_female
ENSMODG00000010622	SMG6	100	84.972	ENSHGLG00100017815	SMG6	96	91.266	Heterocephalus_glaber_male
ENSMODG00000010622	SMG6	72	58.969	ENSHCOG00000008761	smg6	83	59.104	Hippocampus_comes
ENSMODG00000010622	SMG6	87	54.312	ENSIPUG00000012493	smg6	78	54.553	Ictalurus_punctatus
ENSMODG00000010622	SMG6	100	86.287	ENSSTOG00000028127	SMG6	97	92.140	Ictidomys_tridecemlineatus
ENSMODG00000010622	SMG6	79	81.851	ENSJJAG00000015367	Smg6	95	80.121	Jaculus_jaculus
ENSMODG00000010622	SMG6	87	53.483	ENSKMAG00000000279	smg6	77	53.899	Kryptolebias_marmoratus
ENSMODG00000010622	SMG6	87	52.427	ENSLBEG00000002184	smg6	77	52.577	Labrus_bergylta
ENSMODG00000010622	SMG6	55	57.160	ENSLACG00000000806	-	98	57.914	Latimeria_chalumnae
ENSMODG00000010622	SMG6	72	66.255	ENSLOCG00000006448	smg6	99	56.588	Lepisosteus_oculatus
ENSMODG00000010622	SMG6	100	85.584	ENSLAFG00000001261	SMG6	100	85.584	Loxodonta_africana
ENSMODG00000010622	SMG6	100	86.217	ENSMFAG00000003394	SMG6	100	86.217	Macaca_fascicularis
ENSMODG00000010622	SMG6	100	86.146	ENSMMUG00000023161	SMG6	100	86.146	Macaca_mulatta
ENSMODG00000010622	SMG6	100	81.697	ENSMNEG00000044592	SMG6	100	81.697	Macaca_nemestrina
ENSMODG00000010622	SMG6	93	95.301	ENSMLEG00000029353	SMG6	100	95.301	Mandrillus_leucophaeus
ENSMODG00000010622	SMG6	82	55.387	ENSMAMG00000020119	smg6	79	55.885	Mastacembelus_armatus
ENSMODG00000010622	SMG6	72	59.578	ENSMZEG00005024736	smg6	74	55.994	Maylandia_zebra
ENSMODG00000010622	SMG6	73	65.974	ENSMGAG00000005401	-	99	66.163	Meleagris_gallopavo
ENSMODG00000010622	SMG6	100	86.709	ENSMICG00000012913	SMG6	100	86.709	Microcebus_murinus
ENSMODG00000010622	SMG6	87	53.916	ENSMMOG00000010883	smg6	81	54.670	Mola_mola
ENSMODG00000010622	SMG6	83	54.874	ENSMALG00000001106	smg6	73	55.047	Monopterus_albus
ENSMODG00000010622	SMG6	100	85.302	MGP_CAROLIEiJ_G0016729	Smg6	96	92.140	Mus_caroli
ENSMODG00000010622	SMG6	100	85.654	ENSMUSG00000038290	Smg6	96	92.576	Mus_musculus
ENSMODG00000010622	SMG6	100	84.951	MGP_PahariEiJ_G0017866	Smg6	96	92.576	Mus_pahari
ENSMODG00000010622	SMG6	100	85.443	MGP_SPRETEiJ_G0017572	Smg6	97	91.775	Mus_spretus
ENSMODG00000010622	SMG6	100	86.779	ENSMPUG00000013046	SMG6	100	86.779	Mustela_putorius_furo
ENSMODG00000010622	SMG6	100	85.091	ENSMLUG00000005739	SMG6	100	85.091	Myotis_lucifugus
ENSMODG00000010622	SMG6	98	84.328	ENSNGAG00000007287	Smg6	100	87.342	Nannospalax_galili
ENSMODG00000010622	SMG6	74	58.797	ENSNBRG00000009511	smg6	100	48.695	Neolamprologus_brichardi
ENSMODG00000010622	SMG6	98	85.397	ENSNLEG00000017171	SMG6	100	95.303	Nomascus_leucogenys
ENSMODG00000010622	SMG6	98	89.041	ENSMEUG00000015804	SMG6	100	88.969	Notamacropus_eugenii
ENSMODG00000010622	SMG6	62	85.068	ENSOPRG00000000579	SMG6	92	85.068	Ochotona_princeps
ENSMODG00000010622	SMG6	96	93.614	ENSODEG00000008038	SMG6	100	93.614	Octodon_degus
ENSMODG00000010622	SMG6	100	51.205	ENSONIG00000005594	smg6	100	52.151	Oreochromis_niloticus
ENSMODG00000010622	SMG6	100	86.025	ENSOCUG00000013018	SMG6	100	86.025	Oryctolagus_cuniculus
ENSMODG00000010622	SMG6	100	53.198	ENSORLG00000003317	smg6	92	53.730	Oryzias_latipes
ENSMODG00000010622	SMG6	100	52.830	ENSORLG00020015343	smg6	92	53.590	Oryzias_latipes_hni
ENSMODG00000010622	SMG6	100	52.711	ENSORLG00015020454	smg6	92	53.544	Oryzias_latipes_hsok
ENSMODG00000010622	SMG6	88	52.216	ENSOMEG00000010838	smg6	78	53.348	Oryzias_melastigma
ENSMODG00000010622	SMG6	100	86.367	ENSOGAG00000004483	SMG6	100	86.367	Otolemur_garnettii
ENSMODG00000010622	SMG6	100	84.610	ENSOARG00000015076	SMG6	100	86.023	Ovis_aries
ENSMODG00000010622	SMG6	100	86.146	ENSPPAG00000043296	SMG6	100	86.146	Pan_paniscus
ENSMODG00000010622	SMG6	100	86.709	ENSPPRG00000014581	SMG6	100	86.709	Panthera_pardus
ENSMODG00000010622	SMG6	98	86.816	ENSPTIG00000008925	SMG6	100	96.477	Panthera_tigris_altaica
ENSMODG00000010622	SMG6	100	86.076	ENSPTRG00000008544	SMG6	100	95.108	Pan_troglodytes
ENSMODG00000010622	SMG6	100	86.217	ENSPANG00000024588	SMG6	100	86.217	Papio_anubis
ENSMODG00000010622	SMG6	89	71.574	ENSPSIG00000006660	SMG6	96	71.809	Pelodiscus_sinensis
ENSMODG00000010622	SMG6	100	49.599	ENSPMGG00000000844	smg6	100	60.691	Periophthalmus_magnuspinnatus
ENSMODG00000010622	SMG6	100	86.357	ENSPEMG00000020707	Smg6	98	91.703	Peromyscus_maniculatus_bairdii
ENSMODG00000010622	SMG6	100	51.311	ENSPFOG00000012035	smg6	100	51.819	Poecilia_formosa
ENSMODG00000010622	SMG6	72	59.000	ENSPLAG00000017660	smg6	74	54.739	Poecilia_latipinna
ENSMODG00000010622	SMG6	72	58.930	ENSPMEG00000000258	smg6	74	54.824	Poecilia_mexicana
ENSMODG00000010622	SMG6	84	59.107	ENSPREG00000010066	smg6	86	54.660	Poecilia_reticulata
ENSMODG00000010622	SMG6	100	80.632	ENSPPYG00000007790	SMG6	100	80.632	Pongo_abelii
ENSMODG00000010622	SMG6	100	81.716	ENSPCAG00000000552	SMG6	100	81.716	Procavia_capensis
ENSMODG00000010622	SMG6	100	86.287	ENSPCOG00000020925	SMG6	100	86.287	Propithecus_coquereli
ENSMODG00000010622	SMG6	86	89.655	ENSPVAG00000002159	SMG6	86	89.655	Pteropus_vampyrus
ENSMODG00000010622	SMG6	83	56.255	ENSPNYG00000024151	smg6	100	48.724	Pundamilia_nyererei
ENSMODG00000010622	SMG6	86	51.286	ENSPNAG00000015480	smg6	90	47.003	Pygocentrus_nattereri
ENSMODG00000010622	SMG6	100	85.443	ENSRNOG00000003041	Smg6	97	90.490	Rattus_norvegicus
ENSMODG00000010622	SMG6	100	85.935	ENSRBIG00000024746	SMG6	100	85.935	Rhinopithecus_bieti
ENSMODG00000010622	SMG6	100	85.935	ENSRROG00000030423	SMG6	100	94.716	Rhinopithecus_roxellana
ENSMODG00000010622	SMG6	100	85.654	ENSSBOG00000022518	SMG6	100	84.177	Saimiri_boliviensis_boliviensis
ENSMODG00000010622	SMG6	98	93.233	ENSSHAG00000010045	SMG6	98	93.233	Sarcophilus_harrisii
ENSMODG00000010622	SMG6	74	61.783	ENSSFOG00015005436	smg6	70	58.950	Scleropages_formosus
ENSMODG00000010622	SMG6	87	53.720	ENSSMAG00000019777	smg6	73	55.504	Scophthalmus_maximus
ENSMODG00000010622	SMG6	74	58.938	ENSSDUG00000016412	smg6	74	55.047	Seriola_dumerili
ENSMODG00000010622	SMG6	99	70.798	ENSSPUG00000007152	SMG6	99	70.938	Sphenodon_punctatus
ENSMODG00000010622	SMG6	72	59.103	ENSSPAG00000015633	smg6	74	55.599	Stegastes_partitus
ENSMODG00000010622	SMG6	100	85.875	ENSSSCG00000017826	SMG6	100	85.875	Sus_scrofa
ENSMODG00000010622	SMG6	100	72.358	ENSTGUG00000005836	SMG6	100	72.568	Taeniopygia_guttata
ENSMODG00000010622	SMG6	100	49.415	ENSTRUG00000000358	smg6	100	49.578	Takifugu_rubripes
ENSMODG00000010622	SMG6	100	50.725	ENSTNIG00000016164	smg6	100	51.194	Tetraodon_nigroviridis
ENSMODG00000010622	SMG6	100	81.492	ENSTBEG00000011424	SMG6	100	81.492	Tupaia_belangeri
ENSMODG00000010622	SMG6	91	89.697	ENSTTRG00000001175	SMG6	91	89.697	Tursiops_truncatus
ENSMODG00000010622	SMG6	100	86.526	ENSUAMG00000025152	SMG6	100	86.628	Ursus_americanus
ENSMODG00000010622	SMG6	98	86.816	ENSUMAG00000009306	SMG6	100	86.816	Ursus_maritimus
ENSMODG00000010622	SMG6	85	96.296	ENSVPAG00000000225	SMG6	88	96.296	Vicugna_pacos
ENSMODG00000010622	SMG6	100	86.146	ENSVVUG00000021727	SMG6	100	86.146	Vulpes_vulpes
ENSMODG00000010622	SMG6	98	58.953	ENSXETG00000023799	SMG6	100	59.660	Xenopus_tropicalis
ENSMODG00000010622	SMG6	72	60.056	ENSXCOG00000009867	smg6	74	55.680	Xiphophorus_couchianus
ENSMODG00000010622	SMG6	99	52.737	ENSXMAG00000010321	smg6	85	54.751	Xiphophorus_maculatus