EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMODG00000010755 (Gene tree)
Gene ID: 100015835
Gene Symbol: CPSF1
Alias: CPSF160
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Minus strand
Length: 22512 bases
Position: chr3:436043277-436065788
Accession: 100015835
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000013477	CPSF_A	PF03178.15	5.6e-93	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000013723	CPSF1-201	5265	-	ENSMODP00000013477	1449 (aa)	XP_007488835	F7FWI0

Gene Model

Click here to download ENSMODG00000010755's gene model file

Pathways

Pathway ID	Pathway Name	Source
mdo03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000010755's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000010755	CPSF1	100	92.901	ENSG00000071894	CPSF1	100	92.901	Homo_sapiens
ENSMODG00000010755	CPSF1	100	78.340	ENSAPOG00000019621	cpsf1	100	78.205	Acanthochromis_polyacanthus
ENSMODG00000010755	CPSF1	97	91.952	ENSAMEG00000005557	CPSF1	100	91.952	Ailuropoda_melanoleuca
ENSMODG00000010755	CPSF1	100	78.788	ENSACIG00000006112	cpsf1	100	78.650	Amphilophus_citrinellus
ENSMODG00000010755	CPSF1	100	79.602	ENSAOCG00000007120	cpsf1	100	79.464	Amphiprion_ocellaris
ENSMODG00000010755	CPSF1	100	79.753	ENSAPEG00000005755	cpsf1	100	79.684	Amphiprion_percula
ENSMODG00000010755	CPSF1	100	78.586	ENSATEG00000011097	cpsf1	100	78.855	Anabas_testudineus
ENSMODG00000010755	CPSF1	93	83.556	ENSACAG00000009655	CPSF1	100	83.556	Anolis_carolinensis
ENSMODG00000010755	CPSF1	100	93.172	ENSANAG00000036514	CPSF1	100	93.172	Aotus_nancymaae
ENSMODG00000010755	CPSF1	99	78.732	ENSACLG00000012231	cpsf1	99	79.563	Astatotilapia_calliptera
ENSMODG00000010755	CPSF1	100	73.934	ENSAMXG00000008485	cpsf1	100	74.003	Astyanax_mexicanus
ENSMODG00000010755	CPSF1	100	91.927	ENSBTAG00000008355	CPSF1	100	92.391	Bos_taurus
ENSMODG00000010755	CPSF1	100	31.714	WBGene00022301	cpsf-1	100	40.282	Caenorhabditis_elegans
ENSMODG00000010755	CPSF1	100	93.034	ENSCJAG00000021421	CPSF1	100	93.034	Callithrix_jacchus
ENSMODG00000010755	CPSF1	97	93.585	ENSCAFG00000001600	CPSF1	100	94.155	Canis_familiaris
ENSMODG00000010755	CPSF1	100	93.720	ENSCAFG00020020821	CPSF1	100	93.720	Canis_lupus_dingo
ENSMODG00000010755	CPSF1	100	88.522	ENSCHIG00000015833	CPSF1	100	88.522	Capra_hircus
ENSMODG00000010755	CPSF1	100	93.724	ENSTSYG00000028560	CPSF1	100	93.724	Carlito_syrichta
ENSMODG00000010755	CPSF1	97	92.280	ENSCAPG00000014921	CPSF1	99	92.280	Cavia_aperea
ENSMODG00000010755	CPSF1	100	91.586	ENSCPOG00000011448	CPSF1	100	91.586	Cavia_porcellus
ENSMODG00000010755	CPSF1	100	93.103	ENSCCAG00000037658	CPSF1	100	93.103	Cebus_capucinus
ENSMODG00000010755	CPSF1	100	92.897	ENSCATG00000037234	CPSF1	100	92.897	Cercocebus_atys
ENSMODG00000010755	CPSF1	100	93.237	ENSCLAG00000012166	CPSF1	100	93.237	Chinchilla_lanigera
ENSMODG00000010755	CPSF1	100	92.897	ENSCSAG00000008502	CPSF1	100	92.897	Chlorocebus_sabaeus
ENSMODG00000010755	CPSF1	99	89.686	ENSCPBG00000018910	CPSF1	96	89.686	Chrysemys_picta_bellii
ENSMODG00000010755	CPSF1	96	47.755	ENSCING00000000514	-	100	47.684	Ciona_intestinalis
ENSMODG00000010755	CPSF1	99	48.196	ENSCSAVG00000002293	-	98	50.235	Ciona_savignyi
ENSMODG00000010755	CPSF1	99	88.448	ENSCANG00000032760	CPSF1	100	87.963	Colobus_angolensis_palliatus
ENSMODG00000010755	CPSF1	100	92.685	ENSCGRG00001016344	Cpsf1	100	92.685	Cricetulus_griseus_chok1gshd
ENSMODG00000010755	CPSF1	100	90.338	ENSCGRG00000003118	Cpsf1	100	90.338	Cricetulus_griseus_crigri
ENSMODG00000010755	CPSF1	100	77.877	ENSCSEG00000013464	cpsf1	100	77.877	Cynoglossus_semilaevis
ENSMODG00000010755	CPSF1	85	77.592	ENSCVAG00000014059	cpsf1	100	75.463	Cyprinodon_variegatus
ENSMODG00000010755	CPSF1	100	80.165	ENSDARG00000034178	cpsf1	100	80.082	Danio_rerio
ENSMODG00000010755	CPSF1	57	94.783	ENSDNOG00000043654	CPSF1	94	94.783	Dasypus_novemcinctus
ENSMODG00000010755	CPSF1	97	92.995	ENSDORG00000006278	Cpsf1	99	92.995	Dipodomys_ordii
ENSMODG00000010755	CPSF1	100	45.350	FBgn0024698	Cpsf160	100	45.314	Drosophila_melanogaster
ENSMODG00000010755	CPSF1	80	97.315	ENSETEG00000006022	CPSF1	83	97.315	Echinops_telfairi
ENSMODG00000010755	CPSF1	100	94.065	ENSEASG00005010774	CPSF1	100	94.065	Equus_asinus_asinus
ENSMODG00000010755	CPSF1	100	94.203	ENSECAG00000022209	CPSF1	100	94.203	Equus_caballus
ENSMODG00000010755	CPSF1	100	92.000	ENSEEUG00000000471	CPSF1	100	92.000	Erinaceus_europaeus
ENSMODG00000010755	CPSF1	100	78.732	ENSELUG00000012271	cpsf1	100	78.801	Esox_lucius
ENSMODG00000010755	CPSF1	100	93.237	ENSFDAG00000016060	CPSF1	100	93.237	Fukomys_damarensis
ENSMODG00000010755	CPSF1	100	77.450	ENSFHEG00000016801	cpsf1	100	77.313	Fundulus_heteroclitus
ENSMODG00000010755	CPSF1	100	78.249	ENSGMOG00000000796	cpsf1	100	78.273	Gadus_morhua
ENSMODG00000010755	CPSF1	96	85.714	ENSGAFG00000018890	cpsf1	100	85.714	Gambusia_affinis
ENSMODG00000010755	CPSF1	100	78.973	ENSGACG00000008703	cpsf1	100	78.836	Gasterosteus_aculeatus
ENSMODG00000010755	CPSF1	100	86.314	ENSGAGG00000004276	CPSF1	98	89.958	Gopherus_agassizii
ENSMODG00000010755	CPSF1	100	92.961	ENSGGOG00000016185	CPSF1	100	92.961	Gorilla_gorilla
ENSMODG00000010755	CPSF1	100	79.890	ENSHBUG00000018900	cpsf1	100	79.821	Haplochromis_burtoni
ENSMODG00000010755	CPSF1	100	93.168	ENSHGLG00000016139	CPSF1	100	93.168	Heterocephalus_glaber_female
ENSMODG00000010755	CPSF1	100	93.099	ENSHGLG00100009750	CPSF1	100	93.099	Heterocephalus_glaber_male
ENSMODG00000010755	CPSF1	100	77.470	ENSHCOG00000018509	cpsf1	100	77.575	Hippocampus_comes
ENSMODG00000010755	CPSF1	100	77.160	ENSIPUG00000011259	cpsf1	100	77.145	Ictalurus_punctatus
ENSMODG00000010755	CPSF1	97	92.877	ENSSTOG00000009957	CPSF1	99	92.877	Ictidomys_tridecemlineatus
ENSMODG00000010755	CPSF1	100	92.823	ENSJJAG00000023002	Cpsf1	100	92.823	Jaculus_jaculus
ENSMODG00000010755	CPSF1	91	85.580	ENSKMAG00000001940	cpsf1	99	85.580	Kryptolebias_marmoratus
ENSMODG00000010755	CPSF1	100	77.958	ENSLBEG00000003601	cpsf1	100	78.311	Labrus_bergylta
ENSMODG00000010755	CPSF1	88	82.212	ENSLACG00000000233	CPSF1	92	82.212	Latimeria_chalumnae
ENSMODG00000010755	CPSF1	100	79.052	ENSLOCG00000008484	cpsf1	100	79.396	Lepisosteus_oculatus
ENSMODG00000010755	CPSF1	97	93.781	ENSLAFG00000022601	CPSF1	99	93.781	Loxodonta_africana
ENSMODG00000010755	CPSF1	100	92.897	ENSMFAG00000037013	CPSF1	99	94.063	Macaca_fascicularis
ENSMODG00000010755	CPSF1	100	92.966	ENSMMUG00000007380	CPSF1	100	92.966	Macaca_mulatta
ENSMODG00000010755	CPSF1	97	93.214	ENSMNEG00000043564	CPSF1	99	93.214	Macaca_nemestrina
ENSMODG00000010755	CPSF1	100	93.034	ENSMLEG00000043010	CPSF1	100	93.034	Mandrillus_leucophaeus
ENSMODG00000010755	CPSF1	100	78.947	ENSMAMG00000003803	cpsf1	100	79.150	Mastacembelus_armatus
ENSMODG00000010755	CPSF1	100	77.617	ENSMZEG00005001168	cpsf1	100	77.548	Maylandia_zebra
ENSMODG00000010755	CPSF1	100	92.823	ENSMAUG00000003601	Cpsf1	100	92.823	Mesocricetus_auratus
ENSMODG00000010755	CPSF1	100	93.168	ENSMICG00000015767	CPSF1	100	93.168	Microcebus_murinus
ENSMODG00000010755	CPSF1	100	92.754	ENSMOCG00000022758	Cpsf1	100	92.754	Microtus_ochrogaster
ENSMODG00000010755	CPSF1	100	79.353	ENSMMOG00000021245	cpsf1	100	79.284	Mola_mola
ENSMODG00000010755	CPSF1	100	77.905	ENSMALG00000020545	cpsf1	100	77.905	Monopterus_albus
ENSMODG00000010755	CPSF1	100	93.168	MGP_CAROLIEiJ_G0019936	Cpsf1	100	93.168	Mus_caroli
ENSMODG00000010755	CPSF1	100	93.099	ENSMUSG00000034022	Cpsf1	100	93.099	Mus_musculus
ENSMODG00000010755	CPSF1	100	93.237	MGP_PahariEiJ_G0019946	Cpsf1	100	93.237	Mus_pahari
ENSMODG00000010755	CPSF1	100	93.099	MGP_SPRETEiJ_G0020839	Cpsf1	100	93.099	Mus_spretus
ENSMODG00000010755	CPSF1	93	93.427	ENSMPUG00000006419	CPSF1	93	93.427	Mustela_putorius_furo
ENSMODG00000010755	CPSF1	100	92.961	ENSNGAG00000022460	Cpsf1	100	92.961	Nannospalax_galili
ENSMODG00000010755	CPSF1	100	75.017	ENSNBRG00000000813	cpsf1	100	75.086	Neolamprologus_brichardi
ENSMODG00000010755	CPSF1	86	79.825	ENSNLEG00000010633	-	100	87.500	Nomascus_leucogenys
ENSMODG00000010755	CPSF1	82	100.000	ENSMEUG00000014922	CPSF1	85	100.000	Notamacropus_eugenii
ENSMODG00000010755	CPSF1	61	96.429	ENSOPRG00000004693	-	71	96.429	Ochotona_princeps
ENSMODG00000010755	CPSF1	100	93.375	ENSODEG00000013995	CPSF1	100	93.375	Octodon_degus
ENSMODG00000010755	CPSF1	100	80.096	ENSONIG00000007676	cpsf1	100	79.959	Oreochromis_niloticus
ENSMODG00000010755	CPSF1	57	92.857	ENSOANG00000010716	CPSF1	87	92.857	Ornithorhynchus_anatinus
ENSMODG00000010755	CPSF1	100	78.305	ENSORLG00000013544	cpsf1	92	87.654	Oryzias_latipes
ENSMODG00000010755	CPSF1	100	78.441	ENSORLG00020021693	cpsf1	92	87.654	Oryzias_latipes_hni
ENSMODG00000010755	CPSF1	100	78.373	ENSORLG00015009979	cpsf1	100	78.441	Oryzias_latipes_hsok
ENSMODG00000010755	CPSF1	100	78.252	ENSOMEG00000011849	cpsf1	100	78.252	Oryzias_melastigma
ENSMODG00000010755	CPSF1	100	93.172	ENSOGAG00000000315	CPSF1	100	93.172	Otolemur_garnettii
ENSMODG00000010755	CPSF1	100	93.034	ENSPPAG00000019280	CPSF1	100	93.034	Pan_paniscus
ENSMODG00000010755	CPSF1	100	93.034	ENSPTRG00000049288	-	100	93.034	Pan_troglodytes
ENSMODG00000010755	CPSF1	100	91.458	ENSPTRG00000051253	-	100	91.458	Pan_troglodytes
ENSMODG00000010755	CPSF1	97	93.143	ENSPANG00000015005	CPSF1	99	93.143	Papio_anubis
ENSMODG00000010755	CPSF1	100	80.454	ENSPKIG00000002582	cpsf1	100	80.650	Paramormyrops_kingsleyae
ENSMODG00000010755	CPSF1	100	99.724	ENSPCIG00000009035	CPSF1	100	99.724	Phascolarctos_cinereus
ENSMODG00000010755	CPSF1	100	76.959	ENSPFOG00000012870	cpsf1	100	76.892	Poecilia_formosa
ENSMODG00000010755	CPSF1	100	76.907	ENSPREG00000016307	cpsf1	100	76.840	Poecilia_reticulata
ENSMODG00000010755	CPSF1	100	85.517	ENSPPYG00000018973	CPSF1	100	85.517	Pongo_abelii
ENSMODG00000010755	CPSF1	91	94.602	ENSPCAG00000011541	CPSF1	94	94.602	Procavia_capensis
ENSMODG00000010755	CPSF1	100	89.379	ENSPCOG00000020001	CPSF1	100	89.241	Propithecus_coquereli
ENSMODG00000010755	CPSF1	91	98.857	ENSPVAG00000006761	CPSF1	91	98.857	Pteropus_vampyrus
ENSMODG00000010755	CPSF1	100	79.068	ENSPNYG00000004906	cpsf1	100	78.798	Pundamilia_nyererei
ENSMODG00000010755	CPSF1	100	75.618	ENSPNAG00000024395	cpsf1	100	75.618	Pygocentrus_nattereri
ENSMODG00000010755	CPSF1	100	93.030	ENSRNOG00000030705	Cpsf1	100	93.030	Rattus_norvegicus
ENSMODG00000010755	CPSF1	100	92.966	ENSRBIG00000044907	CPSF1	100	92.966	Rhinopithecus_bieti
ENSMODG00000010755	CPSF1	100	92.897	ENSRROG00000044861	CPSF1	100	92.897	Rhinopithecus_roxellana
ENSMODG00000010755	CPSF1	97	93.143	ENSSBOG00000027177	CPSF1	99	93.143	Saimiri_boliviensis_boliviensis
ENSMODG00000010755	CPSF1	100	99.448	ENSSHAG00000006500	CPSF1	100	99.448	Sarcophilus_harrisii
ENSMODG00000010755	CPSF1	100	78.282	ENSSFOG00015004606	cpsf1	100	81.323	Scleropages_formosus
ENSMODG00000010755	CPSF1	100	78.514	ENSSMAG00000020547	cpsf1	100	78.716	Scophthalmus_maximus
ENSMODG00000010755	CPSF1	100	79.505	ENSSDUG00000001100	cpsf1	100	79.574	Seriola_dumerili
ENSMODG00000010755	CPSF1	100	79.628	ENSSLDG00000003619	cpsf1	100	79.628	Seriola_lalandi_dorsalis
ENSMODG00000010755	CPSF1	89	91.667	ENSSARG00000003643	CPSF1	92	91.667	Sorex_araneus
ENSMODG00000010755	CPSF1	96	89.417	ENSSPUG00000014396	CPSF1	99	89.417	Sphenodon_punctatus
ENSMODG00000010755	CPSF1	100	78.596	ENSSPAG00000005349	cpsf1	100	78.731	Stegastes_partitus
ENSMODG00000010755	CPSF1	100	92.823	ENSSSCG00000005906	CPSF1	100	92.823	Sus_scrofa
ENSMODG00000010755	CPSF1	96	78.386	ENSTRUG00000013134	cpsf1	99	78.386	Takifugu_rubripes
ENSMODG00000010755	CPSF1	100	78.947	ENSTNIG00000014027	cpsf1	100	78.811	Tetraodon_nigroviridis
ENSMODG00000010755	CPSF1	77	84.524	ENSTBEG00000001756	CPSF1	91	84.524	Tupaia_belangeri
ENSMODG00000010755	CPSF1	90	96.546	ENSTTRG00000001937	CPSF1	90	96.546	Tursiops_truncatus
ENSMODG00000010755	CPSF1	97	93.942	ENSUAMG00000006476	CPSF1	98	93.942	Ursus_americanus
ENSMODG00000010755	CPSF1	100	77.770	ENSXCOG00000003608	cpsf1	100	77.701	Xiphophorus_couchianus
ENSMODG00000010755	CPSF1	100	77.564	ENSXMAG00000005798	cpsf1	100	77.357	Xiphophorus_maculatus