EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMODG00000012275 (Gene tree)
Gene ID: 100022236
Gene Symbol: SF3B1
Alias: Hsh155|PRPF10|Prp10|SAP155|SF3b155
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Minus strand
Length: 48966 bases
Position: chr4:218433651-218482616
Accession: 100022236
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000015370	SF3b1	PF08920.10	4.9e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000015656	SF3B1-201	6473	XM_001369907	ENSMODP00000015370	1303 (aa)	XP_001369944	F6YFZ8

Gene Model

Click here to download ENSMODG00000012275's gene model file

Pathways

Pathway ID	Pathway Name	Source
mdo03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000012275's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000012275	SF3B1	100	99.310	ENSG00000115524	SF3B1	100	100.000	Homo_sapiens
ENSMODG00000012275	SF3B1	100	92.938	ENSAPOG00000011894	sf3b1	100	92.938	Acanthochromis_polyacanthus
ENSMODG00000012275	SF3B1	99	99.228	ENSAMEG00000013809	SF3B1	99	99.228	Ailuropoda_melanoleuca
ENSMODG00000012275	SF3B1	100	92.607	ENSACIG00000020910	sf3b1	97	92.454	Amphilophus_citrinellus
ENSMODG00000012275	SF3B1	100	93.090	ENSAOCG00000004478	sf3b1	100	93.090	Amphiprion_ocellaris
ENSMODG00000012275	SF3B1	100	93.090	ENSAPEG00000012937	sf3b1	100	93.090	Amphiprion_percula
ENSMODG00000012275	SF3B1	100	93.237	ENSATEG00000020435	sf3b1	100	93.237	Anabas_testudineus
ENSMODG00000012275	SF3B1	99	98.995	ENSAPLG00000003993	SF3B1	99	98.995	Anas_platyrhynchos
ENSMODG00000012275	SF3B1	100	98.619	ENSACAG00000009612	SF3B1	100	98.619	Anolis_carolinensis
ENSMODG00000012275	SF3B1	100	99.310	ENSANAG00000021577	SF3B1	100	99.655	Aotus_nancymaae
ENSMODG00000012275	SF3B1	100	92.249	ENSACLG00000023470	sf3b1	100	92.097	Astatotilapia_calliptera
ENSMODG00000012275	SF3B1	100	93.693	ENSAMXG00000002219	sf3b1	100	93.541	Astyanax_mexicanus
ENSMODG00000012275	SF3B1	100	99.233	ENSBTAG00000008915	SF3B1	100	99.233	Bos_taurus
ENSMODG00000012275	SF3B1	98	66.390	WBGene00011605	sftb-1	98	66.465	Caenorhabditis_elegans
ENSMODG00000012275	SF3B1	100	99.310	ENSCJAG00000003902	SF3B1	100	99.310	Callithrix_jacchus
ENSMODG00000012275	SF3B1	100	99.310	ENSCAFG00000010826	SF3B1	100	99.310	Canis_familiaris
ENSMODG00000012275	SF3B1	100	99.310	ENSCAFG00020004750	SF3B1	100	99.310	Canis_lupus_dingo
ENSMODG00000012275	SF3B1	100	99.233	ENSCHIG00000015226	SF3B1	100	99.233	Capra_hircus
ENSMODG00000012275	SF3B1	100	99.233	ENSTSYG00000009214	SF3B1	100	99.233	Carlito_syrichta
ENSMODG00000012275	SF3B1	99	99.154	ENSCAPG00000006547	SF3B1	99	99.154	Cavia_aperea
ENSMODG00000012275	SF3B1	99	99.304	ENSCPOG00000009353	SF3B1	100	99.304	Cavia_porcellus
ENSMODG00000012275	SF3B1	100	99.310	ENSCCAG00000020506	SF3B1	100	99.310	Cebus_capucinus
ENSMODG00000012275	SF3B1	100	99.310	ENSCATG00000035735	SF3B1	100	99.310	Cercocebus_atys
ENSMODG00000012275	SF3B1	99	99.305	ENSCLAG00000014767	SF3B1	99	99.305	Chinchilla_lanigera
ENSMODG00000012275	SF3B1	100	99.310	ENSCSAG00000011505	SF3B1	100	99.310	Chlorocebus_sabaeus
ENSMODG00000012275	SF3B1	76	96.923	ENSCHOG00000009860	SF3B1	76	96.875	Choloepus_hoffmanni
ENSMODG00000012275	SF3B1	100	99.002	ENSCPBG00000021902	SF3B1	100	99.002	Chrysemys_picta_bellii
ENSMODG00000012275	SF3B1	68	77.619	ENSCING00000002558	-	99	78.683	Ciona_intestinalis
ENSMODG00000012275	SF3B1	99	79.394	ENSCSAVG00000002559	-	99	79.075	Ciona_savignyi
ENSMODG00000012275	SF3B1	100	99.310	ENSCANG00000029415	SF3B1	100	99.310	Colobus_angolensis_palliatus
ENSMODG00000012275	SF3B1	100	99.310	ENSCGRG00001016990	Sf3b1	100	99.310	Cricetulus_griseus_chok1gshd
ENSMODG00000012275	SF3B1	100	99.310	ENSCGRG00000005301	Sf3b1	100	99.310	Cricetulus_griseus_crigri
ENSMODG00000012275	SF3B1	100	89.482	ENSCSEG00000003860	sf3b1	100	89.329	Cynoglossus_semilaevis
ENSMODG00000012275	SF3B1	96	93.123	ENSCVAG00000003680	sf3b1	99	93.123	Cyprinodon_variegatus
ENSMODG00000012275	SF3B1	100	93.014	ENSDARG00000056138	sf3b1	100	92.938	Danio_rerio
ENSMODG00000012275	SF3B1	100	99.234	ENSDNOG00000011754	SF3B1	100	99.234	Dasypus_novemcinctus
ENSMODG00000012275	SF3B1	99	96.911	ENSDORG00000002399	Sf3b1	100	96.911	Dipodomys_ordii
ENSMODG00000012275	SF3B1	100	76.471	FBgn0031266	Sf3b1	100	76.471	Drosophila_melanogaster
ENSMODG00000012275	SF3B1	83	98.609	ENSETEG00000009188	SF3B1	100	98.609	Echinops_telfairi
ENSMODG00000012275	SF3B1	99	87.030	ENSEBUG00000004325	sf3b1	100	90.009	Eptatretus_burgeri
ENSMODG00000012275	SF3B1	100	99.310	ENSEASG00005020159	SF3B1	98	99.310	Equus_asinus_asinus
ENSMODG00000012275	SF3B1	100	99.310	ENSECAG00000021657	SF3B1	98	99.310	Equus_caballus
ENSMODG00000012275	SF3B1	87	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSMODG00000012275	SF3B1	100	92.453	ENSELUG00000005977	sf3b1	98	92.528	Esox_lucius
ENSMODG00000012275	SF3B1	100	99.310	ENSFCAG00000005038	SF3B1	100	99.310	Felis_catus
ENSMODG00000012275	SF3B1	99	98.918	ENSFALG00000004281	SF3B1	99	98.918	Ficedula_albicollis
ENSMODG00000012275	SF3B1	100	99.310	ENSFDAG00000017510	SF3B1	100	99.310	Fukomys_damarensis
ENSMODG00000012275	SF3B1	100	92.407	ENSFHEG00000014333	sf3b1	100	92.407	Fundulus_heteroclitus
ENSMODG00000012275	SF3B1	100	93.069	ENSGMOG00000006773	sf3b1	100	93.069	Gadus_morhua
ENSMODG00000012275	SF3B1	100	99.002	ENSGALG00000008038	SF3B1	100	99.002	Gallus_gallus
ENSMODG00000012275	SF3B1	100	91.457	ENSGAFG00000000704	sf3b1	99	92.978	Gambusia_affinis
ENSMODG00000012275	SF3B1	100	92.759	ENSGACG00000008839	sf3b1	100	93.216	Gasterosteus_aculeatus
ENSMODG00000012275	SF3B1	100	98.323	ENSGAGG00000017478	SF3B1	100	98.323	Gopherus_agassizii
ENSMODG00000012275	SF3B1	99	92.325	ENSGGOG00000009264	SF3B1	99	93.538	Gorilla_gorilla
ENSMODG00000012275	SF3B1	99	92.314	ENSHBUG00000007705	sf3b1	99	92.161	Haplochromis_burtoni
ENSMODG00000012275	SF3B1	99	99.305	ENSHGLG00000008285	-	99	99.305	Heterocephalus_glaber_female
ENSMODG00000012275	SF3B1	99	97.297	ENSHGLG00100005535	-	99	97.297	Heterocephalus_glaber_male
ENSMODG00000012275	SF3B1	100	92.372	ENSHCOG00000016775	sf3b1	100	92.296	Hippocampus_comes
ENSMODG00000012275	SF3B1	100	93.465	ENSIPUG00000013171	sf3b1	100	93.465	Ictalurus_punctatus
ENSMODG00000012275	SF3B1	100	99.310	ENSSTOG00000011034	SF3B1	100	99.310	Ictidomys_tridecemlineatus
ENSMODG00000012275	SF3B1	99	99.225	ENSJJAG00000010903	Sf3b1	99	99.225	Jaculus_jaculus
ENSMODG00000012275	SF3B1	100	92.500	ENSKMAG00000004009	sf3b1	100	92.500	Kryptolebias_marmoratus
ENSMODG00000012275	SF3B1	100	93.130	ENSLBEG00000022208	sf3b1	100	92.977	Labrus_bergylta
ENSMODG00000012275	SF3B1	99	91.954	ENSLACG00000014832	SF3B1	99	91.954	Latimeria_chalumnae
ENSMODG00000012275	SF3B1	100	94.461	ENSLOCG00000003899	sf3b1	100	94.310	Lepisosteus_oculatus
ENSMODG00000012275	SF3B1	100	99.310	ENSLAFG00000001956	SF3B1	100	99.310	Loxodonta_africana
ENSMODG00000012275	SF3B1	99	99.305	ENSMMUG00000022430	SF3B1	99	99.305	Macaca_mulatta
ENSMODG00000012275	SF3B1	100	99.310	ENSMNEG00000042333	SF3B1	100	99.655	Macaca_nemestrina
ENSMODG00000012275	SF3B1	95	92.915	ENSMLEG00000026141	SF3B1	99	93.462	Mandrillus_leucophaeus
ENSMODG00000012275	SF3B1	100	93.161	ENSMAMG00000010241	sf3b1	100	93.161	Mastacembelus_armatus
ENSMODG00000012275	SF3B1	100	92.249	ENSMZEG00005021254	sf3b1	100	92.097	Maylandia_zebra
ENSMODG00000012275	SF3B1	99	98.454	ENSMGAG00000007017	SF3B1	99	98.454	Meleagris_gallopavo
ENSMODG00000012275	SF3B1	99	95.058	ENSMAUG00000009071	Sf3b1	99	95.058	Mesocricetus_auratus
ENSMODG00000012275	SF3B1	100	99.233	ENSMICG00000013879	SF3B1	100	99.233	Microcebus_murinus
ENSMODG00000012275	SF3B1	99	94.830	ENSMOCG00000000455	Sf3b1	99	94.830	Microtus_ochrogaster
ENSMODG00000012275	SF3B1	83	92.420	ENSMMOG00000000475	sf3b1	100	92.420	Mola_mola
ENSMODG00000012275	SF3B1	100	93.085	ENSMALG00000017211	sf3b1	100	93.085	Monopterus_albus
ENSMODG00000012275	SF3B1	100	99.310	MGP_CAROLIEiJ_G0014141	Sf3b1	100	99.310	Mus_caroli
ENSMODG00000012275	SF3B1	100	99.310	ENSMUSG00000025982	Sf3b1	100	99.310	Mus_musculus
ENSMODG00000012275	SF3B1	100	99.310	MGP_SPRETEiJ_G0014947	Sf3b1	100	99.310	Mus_spretus
ENSMODG00000012275	SF3B1	100	99.310	ENSMPUG00000007799	SF3B1	100	99.310	Mustela_putorius_furo
ENSMODG00000012275	SF3B1	100	98.083	ENSMLUG00000000840	SF3B1	100	98.083	Myotis_lucifugus
ENSMODG00000012275	SF3B1	99	99.000	ENSNGAG00000021884	-	100	99.000	Nannospalax_galili
ENSMODG00000012275	SF3B1	100	88.643	ENSNBRG00000015816	sf3b1	100	88.643	Neolamprologus_brichardi
ENSMODG00000012275	SF3B1	100	99.310	ENSNLEG00000006861	SF3B1	100	99.310	Nomascus_leucogenys
ENSMODG00000012275	SF3B1	70	100.000	ENSMEUG00000015848	-	67	100.000	Notamacropus_eugenii
ENSMODG00000012275	SF3B1	100	87.730	ENSOPRG00000008596	SF3B1	100	87.730	Ochotona_princeps
ENSMODG00000012275	SF3B1	100	99.310	ENSODEG00000011153	-	100	99.310	Octodon_degus
ENSMODG00000012275	SF3B1	100	92.249	ENSONIG00000013758	sf3b1	100	92.097	Oreochromis_niloticus
ENSMODG00000012275	SF3B1	83	98.893	ENSOCUG00000012722	-	96	98.893	Oryctolagus_cuniculus
ENSMODG00000012275	SF3B1	100	92.781	ENSORLG00000020219	sf3b1	100	92.781	Oryzias_latipes
ENSMODG00000012275	SF3B1	100	92.781	ENSORLG00020001746	sf3b1	100	92.781	Oryzias_latipes_hni
ENSMODG00000012275	SF3B1	64	90.119	ENSORLG00015001759	sf3b1	98	90.119	Oryzias_latipes_hsok
ENSMODG00000012275	SF3B1	100	92.787	ENSOMEG00000019231	sf3b1	100	92.787	Oryzias_melastigma
ENSMODG00000012275	SF3B1	100	99.233	ENSOARG00000015374	SF3B1	100	99.233	Ovis_aries
ENSMODG00000012275	SF3B1	100	99.310	ENSPPAG00000035007	SF3B1	100	99.310	Pan_paniscus
ENSMODG00000012275	SF3B1	100	99.310	ENSPPRG00000009090	SF3B1	100	99.310	Panthera_pardus
ENSMODG00000012275	SF3B1	100	99.310	ENSPTIG00000021557	SF3B1	100	99.310	Panthera_tigris_altaica
ENSMODG00000012275	SF3B1	99	90.762	ENSPTRG00000012771	SF3B1	99	90.762	Pan_troglodytes
ENSMODG00000012275	SF3B1	100	99.310	ENSPANG00000013417	SF3B1	100	99.310	Papio_anubis
ENSMODG00000012275	SF3B1	100	94.597	ENSPKIG00000000784	sf3b1	100	94.444	Paramormyrops_kingsleyae
ENSMODG00000012275	SF3B1	99	97.834	ENSPSIG00000017222	SF3B1	98	97.834	Pelodiscus_sinensis
ENSMODG00000012275	SF3B1	90	93.429	ENSPMGG00000004330	sf3b1	99	93.260	Periophthalmus_magnuspinnatus
ENSMODG00000012275	SF3B1	99	99.305	ENSPEMG00000010699	Sf3b1	100	99.305	Peromyscus_maniculatus_bairdii
ENSMODG00000012275	SF3B1	100	89.818	ENSPMAG00000001311	sf3b1	100	89.970	Petromyzon_marinus
ENSMODG00000012275	SF3B1	100	99.923	ENSPCIG00000010642	SF3B1	100	99.923	Phascolarctos_cinereus
ENSMODG00000012275	SF3B1	100	92.868	ENSPFOG00000000073	sf3b1	100	92.868	Poecilia_formosa
ENSMODG00000012275	SF3B1	100	92.938	ENSPLAG00000002293	sf3b1	100	92.938	Poecilia_latipinna
ENSMODG00000012275	SF3B1	100	92.938	ENSPMEG00000000446	sf3b1	98	92.938	Poecilia_mexicana
ENSMODG00000012275	SF3B1	100	93.014	ENSPREG00000019652	sf3b1	100	93.014	Poecilia_reticulata
ENSMODG00000012275	SF3B1	100	98.723	ENSPPYG00000013044	SF3B1	96	98.723	Pongo_abelii
ENSMODG00000012275	SF3B1	100	99.156	ENSPCAG00000009292	SF3B1	100	99.156	Procavia_capensis
ENSMODG00000012275	SF3B1	100	99.233	ENSPCOG00000024074	SF3B1	100	99.233	Propithecus_coquereli
ENSMODG00000012275	SF3B1	100	99.310	ENSPVAG00000008302	SF3B1	100	99.310	Pteropus_vampyrus
ENSMODG00000012275	SF3B1	100	92.173	ENSPNYG00000014939	sf3b1	100	92.021	Pundamilia_nyererei
ENSMODG00000012275	SF3B1	100	93.389	ENSPNAG00000008288	sf3b1	100	93.465	Pygocentrus_nattereri
ENSMODG00000012275	SF3B1	100	99.310	ENSRNOG00000013516	Sf3b1	100	99.310	Rattus_norvegicus
ENSMODG00000012275	SF3B1	99	95.545	ENSRBIG00000026096	SF3B1	100	95.545	Rhinopithecus_bieti
ENSMODG00000012275	SF3B1	100	99.310	ENSRROG00000031308	SF3B1	100	99.310	Rhinopithecus_roxellana
ENSMODG00000012275	SF3B1	100	99.310	ENSSBOG00000020080	SF3B1	100	99.310	Saimiri_boliviensis_boliviensis
ENSMODG00000012275	SF3B1	100	100.000	ENSSHAG00000017564	SF3B1	100	100.000	Sarcophilus_harrisii
ENSMODG00000012275	SF3B1	100	94.077	ENSSFOG00015021535	sf3b1	100	94.229	Scleropages_formosus
ENSMODG00000012275	SF3B1	99	92.348	ENSSMAG00000013977	sf3b1	99	92.273	Scophthalmus_maximus
ENSMODG00000012275	SF3B1	100	93.085	ENSSDUG00000017422	sf3b1	100	93.085	Seriola_dumerili
ENSMODG00000012275	SF3B1	100	93.009	ENSSLDG00000019495	sf3b1	100	93.009	Seriola_lalandi_dorsalis
ENSMODG00000012275	SF3B1	76	99.824	ENSSARG00000007016	SF3B1	76	99.824	Sorex_araneus
ENSMODG00000012275	SF3B1	100	98.849	ENSSPUG00000000410	SF3B1	100	98.849	Sphenodon_punctatus
ENSMODG00000012275	SF3B1	100	93.237	ENSSPAG00000010451	sf3b1	99	93.237	Stegastes_partitus
ENSMODG00000012275	SF3B1	91	98.907	ENSSSCG00000016075	SF3B1	100	99.655	Sus_scrofa
ENSMODG00000012275	SF3B1	100	98.926	ENSTGUG00000010553	SF3B1	100	98.926	Taeniopygia_guttata
ENSMODG00000012275	SF3B1	100	93.085	ENSTRUG00000015534	sf3b1	100	92.933	Takifugu_rubripes
ENSMODG00000012275	SF3B1	88	99.793	ENSTBEG00000008714	SF3B1	93	99.793	Tupaia_belangeri
ENSMODG00000012275	SF3B1	92	94.058	ENSTTRG00000003414	SF3B1	92	94.058	Tursiops_truncatus
ENSMODG00000012275	SF3B1	94	94.362	ENSUAMG00000018506	SF3B1	99	98.988	Ursus_americanus
ENSMODG00000012275	SF3B1	100	99.310	ENSUMAG00000020945	SF3B1	100	99.310	Ursus_maritimus
ENSMODG00000012275	SF3B1	100	91.181	ENSVPAG00000005798	SF3B1	100	91.181	Vicugna_pacos
ENSMODG00000012275	SF3B1	100	99.310	ENSVVUG00000025948	SF3B1	95	99.310	Vulpes_vulpes
ENSMODG00000012275	SF3B1	100	96.245	ENSXETG00000013339	sf3b1	100	96.245	Xenopus_tropicalis
ENSMODG00000012275	SF3B1	100	89.450	ENSXCOG00000018086	sf3b1	100	89.337	Xiphophorus_couchianus
ENSMODG00000012275	SF3B1	100	92.938	ENSXMAG00000007369	sf3b1	100	93.154	Xiphophorus_maculatus