EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMODG00000012925 (Gene tree)
Gene ID: 100010935
Gene Symbol: -
Alias: -
Full Name: signal recognition particle 54
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Plus strand
Length: 40790 bases
Position: chr1:285411587-285452376
Accession: 100010935
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000016172	SRP54	PF00448.22	7.9e-79	1	1
ENSMODP00000016172	SRP54_N	PF02881.19	1.3e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000016472	-	1570	-	ENSMODP00000016172	504 (aa)	XP_001363021	F7GC32

Gene Model

Click here to download ENSMODG00000012925's gene model file

Pathways

Pathway ID	Pathway Name	Source
mdo03060	Protein export	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000012925's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMODG00000012925	-	100	100.000	ENSMODG00000023150	-	100	100.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000012925	-	100	99.802	ENSG00000100883	SRP54	100	100.000	Homo_sapiens
ENSMODG00000012925	-	100	95.833	ENSAPOG00000011314	srp54	100	95.833	Acanthochromis_polyacanthus
ENSMODG00000012925	-	100	99.802	ENSAMEG00000015544	SRP54	100	99.802	Ailuropoda_melanoleuca
ENSMODG00000012925	-	89	94.655	ENSACIG00000022831	srp54	97	94.655	Amphilophus_citrinellus
ENSMODG00000012925	-	100	95.833	ENSAOCG00000019401	srp54	100	95.833	Amphiprion_ocellaris
ENSMODG00000012925	-	100	95.833	ENSAPEG00000001977	srp54	100	95.833	Amphiprion_percula
ENSMODG00000012925	-	100	96.230	ENSATEG00000013877	srp54	100	96.230	Anabas_testudineus
ENSMODG00000012925	-	94	98.523	ENSAPLG00000010125	SRP54	95	98.523	Anas_platyrhynchos
ENSMODG00000012925	-	65	81.873	ENSACAG00000001124	-	100	81.873	Anolis_carolinensis
ENSMODG00000012925	-	86	95.392	ENSACAG00000010631	-	100	95.392	Anolis_carolinensis
ENSMODG00000012925	-	100	98.413	ENSACAG00000002103	-	100	98.413	Anolis_carolinensis
ENSMODG00000012925	-	100	99.802	ENSANAG00000022133	SRP54	100	99.802	Aotus_nancymaae
ENSMODG00000012925	-	100	96.032	ENSACLG00000015866	srp54	100	96.032	Astatotilapia_calliptera
ENSMODG00000012925	-	100	95.635	ENSAMXG00000032669	SRP54	100	95.635	Astyanax_mexicanus
ENSMODG00000012925	-	100	99.802	ENSBTAG00000019085	SRP54	100	99.802	Bos_taurus
ENSMODG00000012925	-	98	71.687	WBGene00009012	F21D5.7	100	71.687	Caenorhabditis_elegans
ENSMODG00000012925	-	100	99.802	ENSCJAG00000006581	SRP54	100	99.802	Callithrix_jacchus
ENSMODG00000012925	-	100	99.802	ENSCAFG00000013331	SRP54	100	99.802	Canis_familiaris
ENSMODG00000012925	-	100	99.802	ENSCAFG00020023427	SRP54	100	99.802	Canis_lupus_dingo
ENSMODG00000012925	-	100	99.802	ENSCHIG00000026345	SRP54	100	99.802	Capra_hircus
ENSMODG00000012925	-	94	88.421	ENSTSYG00000035333	-	93	88.421	Carlito_syrichta
ENSMODG00000012925	-	100	99.603	ENSTSYG00000002680	-	100	99.603	Carlito_syrichta
ENSMODG00000012925	-	94	64.286	ENSCAPG00000008780	SRP54	100	64.286	Cavia_aperea
ENSMODG00000012925	-	100	99.405	ENSCPOG00000003691	SRP54	100	99.405	Cavia_porcellus
ENSMODG00000012925	-	90	99.524	ENSCCAG00000024179	SRP54	100	99.761	Cebus_capucinus
ENSMODG00000012925	-	100	99.802	ENSCATG00000034083	SRP54	100	99.802	Cercocebus_atys
ENSMODG00000012925	-	100	99.802	ENSCLAG00000015076	SRP54	100	99.802	Chinchilla_lanigera
ENSMODG00000012925	-	100	99.802	ENSCSAG00000015575	SRP54	100	99.802	Chlorocebus_sabaeus
ENSMODG00000012925	-	95	87.734	ENSCHOG00000008986	SRP54	100	87.734	Choloepus_hoffmanni
ENSMODG00000012925	-	100	99.008	ENSCPBG00000026195	SRP54	100	99.008	Chrysemys_picta_bellii
ENSMODG00000012925	-	100	81.944	ENSCING00000007380	-	100	81.944	Ciona_intestinalis
ENSMODG00000012925	-	100	99.802	ENSCANG00000028532	SRP54	100	99.802	Colobus_angolensis_palliatus
ENSMODG00000012925	-	100	99.405	ENSCGRG00001009525	-	100	99.405	Cricetulus_griseus_chok1gshd
ENSMODG00000012925	-	76	99.221	ENSCGRG00000009453	-	89	99.221	Cricetulus_griseus_crigri
ENSMODG00000012925	-	100	95.040	ENSCSEG00000012392	srp54	100	95.040	Cynoglossus_semilaevis
ENSMODG00000012925	-	100	95.833	ENSCVAG00000010395	srp54	100	95.833	Cyprinodon_variegatus
ENSMODG00000012925	-	100	96.032	ENSDARG00000098367	srp54	100	96.032	Danio_rerio
ENSMODG00000012925	-	100	99.802	ENSDNOG00000032525	SRP54	100	99.802	Dasypus_novemcinctus
ENSMODG00000012925	-	89	85.045	ENSDORG00000005159	-	97	85.045	Dipodomys_ordii
ENSMODG00000012925	-	96	77.526	FBgn0010747	Srp54k	98	77.108	Drosophila_melanogaster
ENSMODG00000012925	-	100	98.611	ENSETEG00000016307	-	100	98.611	Echinops_telfairi
ENSMODG00000012925	-	83	58.134	ENSETEG00000012102	-	99	58.134	Echinops_telfairi
ENSMODG00000012925	-	100	87.698	ENSEBUG00000009437	-	100	87.698	Eptatretus_burgeri
ENSMODG00000012925	-	100	99.802	ENSEASG00005002057	SRP54	100	99.802	Equus_asinus_asinus
ENSMODG00000012925	-	99	99.598	ENSECAG00000018042	SRP54	98	99.598	Equus_caballus
ENSMODG00000012925	-	100	83.135	ENSEEUG00000001511	SRP54	100	83.135	Erinaceus_europaeus
ENSMODG00000012925	-	100	95.238	ENSELUG00000003395	srp54	100	95.238	Esox_lucius
ENSMODG00000012925	-	100	99.603	ENSFCAG00000032033	SRP54	100	99.603	Felis_catus
ENSMODG00000012925	-	100	98.611	ENSFALG00000005995	SRP54	100	98.611	Ficedula_albicollis
ENSMODG00000012925	-	100	99.802	ENSFDAG00000016767	SRP54	100	99.802	Fukomys_damarensis
ENSMODG00000012925	-	100	95.437	ENSFHEG00000004263	srp54	100	95.437	Fundulus_heteroclitus
ENSMODG00000012925	-	95	90.167	ENSGMOG00000011391	srp54	100	90.167	Gadus_morhua
ENSMODG00000012925	-	100	98.611	ENSGALG00000023135	SRP54	100	98.611	Gallus_gallus
ENSMODG00000012925	-	100	96.032	ENSGAFG00000011586	srp54	100	96.032	Gambusia_affinis
ENSMODG00000012925	-	100	95.437	ENSGACG00000004181	srp54	100	95.437	Gasterosteus_aculeatus
ENSMODG00000012925	-	100	99.008	ENSGAGG00000014766	SRP54	100	99.008	Gopherus_agassizii
ENSMODG00000012925	-	100	99.802	ENSGGOG00000002926	SRP54	100	99.802	Gorilla_gorilla
ENSMODG00000012925	-	100	96.032	ENSHBUG00000005678	srp54	100	96.032	Haplochromis_burtoni
ENSMODG00000012925	-	100	99.802	ENSHGLG00000002850	SRP54	100	99.802	Heterocephalus_glaber_female
ENSMODG00000012925	-	100	68.911	ENSHGLG00100007281	-	100	68.911	Heterocephalus_glaber_male
ENSMODG00000012925	-	100	99.802	ENSHGLG00100005263	SRP54	100	99.802	Heterocephalus_glaber_male
ENSMODG00000012925	-	100	94.048	ENSHCOG00000021127	srp54	100	94.048	Hippocampus_comes
ENSMODG00000012925	-	100	95.238	ENSIPUG00000001420	srp54	100	95.238	Ictalurus_punctatus
ENSMODG00000012925	-	100	99.802	ENSSTOG00000016023	SRP54	100	99.802	Ictidomys_tridecemlineatus
ENSMODG00000012925	-	100	94.643	ENSJJAG00000013417	-	100	94.643	Jaculus_jaculus
ENSMODG00000012925	-	87	76.364	ENSJJAG00000016404	-	100	76.364	Jaculus_jaculus
ENSMODG00000012925	-	100	95.437	ENSKMAG00000007707	srp54	100	95.437	Kryptolebias_marmoratus
ENSMODG00000012925	-	100	95.833	ENSLBEG00000021122	srp54	100	95.833	Labrus_bergylta
ENSMODG00000012925	-	100	95.833	ENSLBEG00000018690	srp54	100	95.833	Labrus_bergylta
ENSMODG00000012925	-	100	96.230	ENSLACG00000017890	SRP54	100	96.230	Latimeria_chalumnae
ENSMODG00000012925	-	100	96.825	ENSLOCG00000009440	srp54	100	96.825	Lepisosteus_oculatus
ENSMODG00000012925	-	100	99.802	ENSLAFG00000012007	SRP54	100	99.802	Loxodonta_africana
ENSMODG00000012925	-	100	99.802	ENSMFAG00000044371	SRP54	100	99.802	Macaca_fascicularis
ENSMODG00000012925	-	100	99.802	ENSMMUG00000015073	FAM177A1	100	99.802	Macaca_mulatta
ENSMODG00000012925	-	100	99.802	ENSMNEG00000006947	SRP54	100	99.802	Macaca_nemestrina
ENSMODG00000012925	-	100	99.802	ENSMLEG00000042251	SRP54	100	99.802	Mandrillus_leucophaeus
ENSMODG00000012925	-	100	96.032	ENSMAMG00000004803	srp54	100	96.032	Mastacembelus_armatus
ENSMODG00000012925	-	100	96.032	ENSMZEG00005027528	srp54	100	96.032	Maylandia_zebra
ENSMODG00000012925	-	100	93.874	ENSMGAG00000012481	SRP54	100	93.874	Meleagris_gallopavo
ENSMODG00000012925	-	100	99.603	ENSMAUG00000014447	-	100	99.603	Mesocricetus_auratus
ENSMODG00000012925	-	100	99.802	ENSMICG00000010270	SRP54	100	99.802	Microcebus_murinus
ENSMODG00000012925	-	87	99.545	ENSMOCG00000000948	-	100	99.545	Microtus_ochrogaster
ENSMODG00000012925	-	89	94.183	ENSMMOG00000020303	srp54	98	94.183	Mola_mola
ENSMODG00000012925	-	88	95.485	ENSMALG00000009163	srp54	98	95.485	Monopterus_albus
ENSMODG00000012925	-	100	99.603	MGP_CAROLIEiJ_G0017754	-	100	99.603	Mus_caroli
ENSMODG00000012925	-	100	99.603	ENSMUSG00000073079	Srp54a	100	99.603	Mus_musculus
ENSMODG00000012925	-	100	98.810	ENSMUSG00000079108	Srp54c	100	98.810	Mus_musculus
ENSMODG00000012925	-	100	99.603	ENSMUSG00000112449	Srp54b	100	99.603	Mus_musculus
ENSMODG00000012925	-	100	99.603	MGP_PahariEiJ_G0029510	-	100	99.603	Mus_pahari
ENSMODG00000012925	-	100	99.802	ENSMPUG00000016302	SRP54	100	99.802	Mustela_putorius_furo
ENSMODG00000012925	-	100	99.206	ENSMLUG00000008958	SRP54	100	99.206	Myotis_lucifugus
ENSMODG00000012925	-	100	89.683	ENSNGAG00000019806	-	100	89.683	Nannospalax_galili
ENSMODG00000012925	-	87	95.682	ENSNBRG00000006000	srp54	100	95.682	Neolamprologus_brichardi
ENSMODG00000012925	-	100	99.802	ENSNLEG00000003496	SRP54	100	99.802	Nomascus_leucogenys
ENSMODG00000012925	-	67	100.000	ENSMEUG00000000138	-	76	100.000	Notamacropus_eugenii
ENSMODG00000012925	-	58	100.000	ENSOPRG00000014502	-	60	100.000	Ochotona_princeps
ENSMODG00000012925	-	100	99.802	ENSODEG00000004865	SRP54	100	99.802	Octodon_degus
ENSMODG00000012925	-	100	96.032	ENSONIG00000011768	srp54	100	96.032	Oreochromis_niloticus
ENSMODG00000012925	-	100	99.802	ENSOANG00000014051	SRP54	100	99.802	Ornithorhynchus_anatinus
ENSMODG00000012925	-	100	99.206	ENSOCUG00000007838	SRP54	100	99.206	Oryctolagus_cuniculus
ENSMODG00000012925	-	100	95.833	ENSORLG00000010027	srp54	100	95.833	Oryzias_latipes
ENSMODG00000012925	-	100	95.833	ENSORLG00020001878	srp54	100	95.833	Oryzias_latipes_hni
ENSMODG00000012925	-	100	95.833	ENSORLG00015021866	srp54	100	95.833	Oryzias_latipes_hsok
ENSMODG00000012925	-	100	95.635	ENSOMEG00000020952	srp54	100	95.635	Oryzias_melastigma
ENSMODG00000012925	-	100	99.802	ENSOGAG00000012188	SRP54	100	99.802	Otolemur_garnettii
ENSMODG00000012925	-	100	99.802	ENSOARG00000007160	SRP54	100	99.802	Ovis_aries
ENSMODG00000012925	-	100	99.802	ENSPPAG00000017434	SRP54	100	99.802	Pan_paniscus
ENSMODG00000012925	-	100	98.611	ENSPPRG00000014047	SRP54	100	98.611	Panthera_pardus
ENSMODG00000012925	-	100	99.603	ENSPTIG00000000744	SRP54	96	99.603	Panthera_tigris_altaica
ENSMODG00000012925	-	100	99.802	ENSPTRG00000006259	FAM177A1	100	99.802	Pan_troglodytes
ENSMODG00000012925	-	100	99.802	ENSPANG00000023853	SRP54	100	99.802	Papio_anubis
ENSMODG00000012925	-	100	95.635	ENSPKIG00000001953	srp54	100	95.635	Paramormyrops_kingsleyae
ENSMODG00000012925	-	100	98.810	ENSPSIG00000006476	SRP54	100	98.810	Pelodiscus_sinensis
ENSMODG00000012925	-	91	93.043	ENSPMGG00000004127	srp54	99	93.043	Periophthalmus_magnuspinnatus
ENSMODG00000012925	-	100	86.706	ENSPEMG00000019634	-	100	86.706	Peromyscus_maniculatus_bairdii
ENSMODG00000012925	-	100	88.690	ENSPMAG00000006078	-	100	88.690	Petromyzon_marinus
ENSMODG00000012925	-	100	99.802	ENSPCIG00000016175	SRP54	100	99.802	Phascolarctos_cinereus
ENSMODG00000012925	-	100	96.032	ENSPFOG00000008870	srp54	100	96.032	Poecilia_formosa
ENSMODG00000012925	-	100	96.032	ENSPLAG00000009889	srp54	100	96.032	Poecilia_latipinna
ENSMODG00000012925	-	100	96.032	ENSPMEG00000008601	srp54	100	96.032	Poecilia_mexicana
ENSMODG00000012925	-	100	96.032	ENSPREG00000004505	srp54	100	96.032	Poecilia_reticulata
ENSMODG00000012925	-	100	94.643	ENSPPYG00000005739	SRP54	100	94.643	Pongo_abelii
ENSMODG00000012925	-	100	95.635	ENSPCAG00000006268	SRP54	100	95.635	Procavia_capensis
ENSMODG00000012925	-	100	97.822	ENSPCOG00000022473	SRP54	100	97.822	Propithecus_coquereli
ENSMODG00000012925	-	63	100.000	ENSPVAG00000010056	SRP54	82	100.000	Pteropus_vampyrus
ENSMODG00000012925	-	100	96.032	ENSPNYG00000009717	srp54	100	96.032	Pundamilia_nyererei
ENSMODG00000012925	-	100	95.833	ENSPNAG00000008544	srp54	100	95.833	Pygocentrus_nattereri
ENSMODG00000012925	-	100	99.405	ENSRNOG00000032776	Srp54a	100	99.405	Rattus_norvegicus
ENSMODG00000012925	-	100	99.802	ENSRROG00000041292	SRP54	100	99.802	Rhinopithecus_roxellana
ENSMODG00000012925	-	86	53.061	YPR088C	SRP54	95	48.276	Saccharomyces_cerevisiae
ENSMODG00000012925	-	94	99.789	ENSSBOG00000035145	SRP54	100	99.789	Saimiri_boliviensis_boliviensis
ENSMODG00000012925	-	68	100.000	ENSSHAG00000000671	SRP54	100	100.000	Sarcophilus_harrisii
ENSMODG00000012925	-	100	96.230	ENSSFOG00015013920	srp54	100	96.230	Scleropages_formosus
ENSMODG00000012925	-	100	89.888	ENSSMAG00000002441	srp54	100	89.888	Scophthalmus_maximus
ENSMODG00000012925	-	100	95.635	ENSSDUG00000018586	srp54	100	95.635	Seriola_dumerili
ENSMODG00000012925	-	100	95.437	ENSSLDG00000010476	srp54	100	95.437	Seriola_lalandi_dorsalis
ENSMODG00000012925	-	100	99.802	ENSSARG00000002744	SRP54	100	99.802	Sorex_araneus
ENSMODG00000012925	-	100	99.008	ENSSPUG00000013101	SRP54	100	99.008	Sphenodon_punctatus
ENSMODG00000012925	-	100	95.833	ENSSPAG00000002354	srp54	100	95.833	Stegastes_partitus
ENSMODG00000012925	-	100	99.802	ENSSSCG00000001955	SRP54	100	99.802	Sus_scrofa
ENSMODG00000012925	-	94	98.523	ENSTGUG00000011945	-	95	98.523	Taeniopygia_guttata
ENSMODG00000012925	-	100	95.040	ENSTRUG00000007057	srp54	100	95.040	Takifugu_rubripes
ENSMODG00000012925	-	100	94.643	ENSTNIG00000002589	srp54	100	94.643	Tetraodon_nigroviridis
ENSMODG00000012925	-	89	91.275	ENSTBEG00000011409	SRP54	100	91.275	Tupaia_belangeri
ENSMODG00000012925	-	100	89.683	ENSTTRG00000000928	SRP54	100	89.683	Tursiops_truncatus
ENSMODG00000012925	-	52	99.618	ENSUAMG00000012385	SRP54	100	99.618	Ursus_americanus
ENSMODG00000012925	-	100	99.802	ENSUMAG00000011234	SRP54	100	99.802	Ursus_maritimus
ENSMODG00000012925	-	94	99.578	ENSVPAG00000005668	SRP54	100	99.578	Vicugna_pacos
ENSMODG00000012925	-	100	99.802	ENSVVUG00000019962	SRP54	100	99.802	Vulpes_vulpes
ENSMODG00000012925	-	100	82.446	ENSXETG00000012290	srp54	100	82.446	Xenopus_tropicalis
ENSMODG00000012925	-	88	95.937	ENSXCOG00000004658	srp54	96	95.937	Xiphophorus_couchianus
ENSMODG00000012925	-	100	96.032	ENSXMAG00000018315	srp54	100	96.032	Xiphophorus_maculatus