EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMODG00000013617 (Gene tree)
Gene ID: 100017767
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Minus strand
Length: 5759 bases
Position: chr2:528616373-528622131
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000017032	RNA_pol_L_2	PF13656.6	3e-29	1	1
ENSMODP00000017032	RNA_pol_L	PF01193.24	3.3e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000017348	-	387	-	ENSMODP00000017032	128 (aa)	-	F6VE83

Gene Model

Click here to download ENSMODG00000013617's gene model file

Pathways

Pathway ID	Pathway Name	Source
mdo03020	RNA polymerase	KEGG
mdo05016	Huntington disease	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000013617's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMODG00000013617	-	73	31.183	ENSMODG00000023881	POLR1D	82	31.183

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000013617	-	88	95.536	ENSG00000228049	POLR2J2	91	98.113	Homo_sapiens
ENSMODG00000013617	-	100	91.406	ENSG00000005075	POLR2J	100	91.406	Homo_sapiens
ENSMODG00000013617	-	100	86.719	ENSAPOG00000019538	polr2j	100	86.719	Acanthochromis_polyacanthus
ENSMODG00000013617	-	100	92.308	ENSAMEG00000015480	-	100	92.308	Ailuropoda_melanoleuca
ENSMODG00000013617	-	83	71.963	ENSACIG00000014549	POLR2J2	88	71.963	Amphilophus_citrinellus
ENSMODG00000013617	-	100	85.938	ENSAOCG00000006937	polr2j	100	85.938	Amphiprion_ocellaris
ENSMODG00000013617	-	100	86.719	ENSAPEG00000021761	polr2j	100	86.719	Amphiprion_percula
ENSMODG00000013617	-	100	86.719	ENSATEG00000013312	-	100	86.719	Anabas_testudineus
ENSMODG00000013617	-	100	86.719	ENSATEG00000009731	polr2j	100	86.719	Anabas_testudineus
ENSMODG00000013617	-	88	88.393	ENSAPLG00000003744	-	100	88.393	Anas_platyrhynchos
ENSMODG00000013617	-	100	82.812	ENSACAG00000000251	POLR2J	100	82.812	Anolis_carolinensis
ENSMODG00000013617	-	100	86.719	ENSACLG00000014564	polr2j	100	86.719	Astatotilapia_calliptera
ENSMODG00000013617	-	100	88.281	ENSAMXG00000007517	polr2j	100	88.281	Astyanax_mexicanus
ENSMODG00000013617	-	57	68.493	ENSBTAG00000048046	-	61	68.493	Bos_taurus
ENSMODG00000013617	-	81	71.154	WBGene00012187	rpb-11	84	71.154	Caenorhabditis_elegans
ENSMODG00000013617	-	100	91.406	ENSCJAG00000016203	-	100	91.406	Callithrix_jacchus
ENSMODG00000013617	-	100	91.406	ENSCAFG00000013683	-	100	91.406	Canis_familiaris
ENSMODG00000013617	-	86	90.000	ENSTSYG00000029243	-	85	90.000	Carlito_syrichta
ENSMODG00000013617	-	100	91.406	ENSCPOG00000001401	-	100	91.406	Cavia_porcellus
ENSMODG00000013617	-	100	67.969	ENSCATG00000016595	-	97	76.699	Cercocebus_atys
ENSMODG00000013617	-	100	91.406	ENSCLAG00000005238	-	100	91.406	Chinchilla_lanigera
ENSMODG00000013617	-	100	91.406	ENSCSAG00000018092	-	100	91.406	Chlorocebus_sabaeus
ENSMODG00000013617	-	100	74.219	ENSCING00000020531	-	100	74.219	Ciona_intestinalis
ENSMODG00000013617	-	100	74.219	ENSCSAVG00000006948	-	100	74.219	Ciona_savignyi
ENSMODG00000013617	-	100	91.406	ENSCGRG00001012814	Polr2j	100	91.406	Cricetulus_griseus_chok1gshd
ENSMODG00000013617	-	100	77.344	ENSCGRG00000008433	Polr2j	100	77.344	Cricetulus_griseus_crigri
ENSMODG00000013617	-	100	85.938	ENSCSEG00000020352	polr2j	100	85.938	Cynoglossus_semilaevis
ENSMODG00000013617	-	100	85.938	ENSCVAG00000014267	polr2j	100	85.938	Cyprinodon_variegatus
ENSMODG00000013617	-	100	87.500	ENSDARG00000035146	polr2j	100	87.500	Danio_rerio
ENSMODG00000013617	-	100	91.406	ENSDORG00000005934	Polr2j	100	91.406	Dipodomys_ordii
ENSMODG00000013617	-	98	71.429	FBgn0032634	Rpb11	98	71.429	Drosophila_melanogaster
ENSMODG00000013617	-	100	58.594	ENSEBUG00000016100	polr2j	100	58.594	Eptatretus_burgeri
ENSMODG00000013617	-	100	91.406	ENSEASG00005016864	-	100	91.406	Equus_asinus_asinus
ENSMODG00000013617	-	100	87.500	ENSELUG00000012822	polr2j	100	87.500	Esox_lucius
ENSMODG00000013617	-	100	91.406	ENSFCAG00000000377	-	100	91.406	Felis_catus
ENSMODG00000013617	-	100	91.406	ENSFALG00000009523	POLR2J	100	91.406	Ficedula_albicollis
ENSMODG00000013617	-	100	91.406	ENSFDAG00000010507	-	100	91.406	Fukomys_damarensis
ENSMODG00000013617	-	100	86.719	ENSFHEG00000006625	polr2j	100	86.719	Fundulus_heteroclitus
ENSMODG00000013617	-	100	86.719	ENSGMOG00000018207	polr2j	100	86.719	Gadus_morhua
ENSMODG00000013617	-	100	91.406	ENSGALG00000030808	-	100	91.406	Gallus_gallus
ENSMODG00000013617	-	100	86.719	ENSGAFG00000019555	polr2j	100	86.719	Gambusia_affinis
ENSMODG00000013617	-	100	86.719	ENSGACG00000003310	polr2j	100	86.719	Gasterosteus_aculeatus
ENSMODG00000013617	-	97	82.258	ENSGAGG00000018304	-	96	82.258	Gopherus_agassizii
ENSMODG00000013617	-	87	85.586	ENSGGOG00000004519	-	80	85.586	Gorilla_gorilla
ENSMODG00000013617	-	100	86.719	ENSHBUG00000008467	polr2j	100	86.719	Haplochromis_burtoni
ENSMODG00000013617	-	100	91.406	ENSHGLG00000013598	POLR2J	98	100.000	Heterocephalus_glaber_female
ENSMODG00000013617	-	100	91.406	ENSHGLG00100011242	POLR2J	98	100.000	Heterocephalus_glaber_male
ENSMODG00000013617	-	100	86.719	ENSHCOG00000014827	polr2j	68	86.719	Hippocampus_comes
ENSMODG00000013617	-	100	88.281	ENSIPUG00000023960	polr2j	100	88.281	Ictalurus_punctatus
ENSMODG00000013617	-	100	91.406	ENSSTOG00000006377	POLR2J	99	95.652	Ictidomys_tridecemlineatus
ENSMODG00000013617	-	100	86.719	ENSJJAG00000018834	-	100	86.719	Jaculus_jaculus
ENSMODG00000013617	-	100	91.406	ENSJJAG00000013854	-	100	91.406	Jaculus_jaculus
ENSMODG00000013617	-	100	86.719	ENSKMAG00000014581	polr2j	79	86.719	Kryptolebias_marmoratus
ENSMODG00000013617	-	100	86.719	ENSLBEG00000005885	polr2j	100	86.719	Labrus_bergylta
ENSMODG00000013617	-	100	88.281	ENSLOCG00000001885	polr2j	89	88.281	Lepisosteus_oculatus
ENSMODG00000013617	-	100	91.406	ENSLAFG00000021507	-	100	91.406	Loxodonta_africana
ENSMODG00000013617	-	100	90.769	ENSMMUG00000012019	POLR2J	100	90.769	Macaca_mulatta
ENSMODG00000013617	-	100	86.719	ENSMAMG00000009374	polr2j	100	86.719	Mastacembelus_armatus
ENSMODG00000013617	-	100	86.719	ENSMZEG00005011932	polr2j	100	86.719	Maylandia_zebra
ENSMODG00000013617	-	100	91.406	ENSMGAG00000003534	POLR2J	100	91.406	Meleagris_gallopavo
ENSMODG00000013617	-	100	91.406	ENSMAUG00000013049	Polr2j	100	91.406	Mesocricetus_auratus
ENSMODG00000013617	-	79	91.089	ENSMICG00000026811	-	98	91.089	Microcebus_murinus
ENSMODG00000013617	-	100	91.406	ENSMOCG00000001294	Polr2j	100	91.406	Microtus_ochrogaster
ENSMODG00000013617	-	100	85.938	ENSMMOG00000013265	polr2j	100	85.938	Mola_mola
ENSMODG00000013617	-	100	86.719	ENSMALG00000020749	polr2j	100	86.719	Monopterus_albus
ENSMODG00000013617	-	100	91.406	MGP_CAROLIEiJ_G0027851	Polr2j	100	95.652	Mus_caroli
ENSMODG00000013617	-	100	91.406	ENSMUSG00000039771	Polr2j	100	96.522	Mus_musculus
ENSMODG00000013617	-	100	91.406	MGP_PahariEiJ_G0024434	Polr2j	94	98.214	Mus_pahari
ENSMODG00000013617	-	100	91.406	MGP_SPRETEiJ_G0028853	Polr2j	100	96.522	Mus_spretus
ENSMODG00000013617	-	100	91.406	ENSMLUG00000010467	POLR2J	100	91.406	Myotis_lucifugus
ENSMODG00000013617	-	100	91.406	ENSNGAG00000023412	Polr2j	97	100.000	Nannospalax_galili
ENSMODG00000013617	-	60	90.909	ENSNBRG00000006580	polr2j	59	90.909	Neolamprologus_brichardi
ENSMODG00000013617	-	100	70.312	ENSODEG00000008559	-	100	70.312	Octodon_degus
ENSMODG00000013617	-	100	91.406	ENSODEG00000015648	-	96	100.000	Octodon_degus
ENSMODG00000013617	-	100	86.719	ENSONIG00000000259	polr2j	100	86.719	Oreochromis_niloticus
ENSMODG00000013617	-	100	89.062	ENSOANG00000020912	POLR2J	100	89.062	Ornithorhynchus_anatinus
ENSMODG00000013617	-	100	93.750	ENSOCUG00000023609	POLR2J	100	93.750	Oryctolagus_cuniculus
ENSMODG00000013617	-	100	86.719	ENSORLG00000029046	polr2j	83	86.719	Oryzias_latipes
ENSMODG00000013617	-	100	86.719	ENSORLG00020007625	polr2j	83	86.719	Oryzias_latipes_hni
ENSMODG00000013617	-	100	86.719	ENSORLG00015003457	polr2j	83	86.719	Oryzias_latipes_hsok
ENSMODG00000013617	-	100	85.938	ENSOMEG00000002097	polr2j	100	85.938	Oryzias_melastigma
ENSMODG00000013617	-	100	75.385	ENSOGAG00000008250	-	100	75.385	Otolemur_garnettii
ENSMODG00000013617	-	100	91.406	ENSOARG00000014204	-	98	91.406	Ovis_aries
ENSMODG00000013617	-	100	91.406	ENSPPRG00000012439	-	100	91.406	Panthera_pardus
ENSMODG00000013617	-	98	83.200	ENSPTIG00000018714	-	100	87.719	Panthera_tigris_altaica
ENSMODG00000013617	-	87	89.189	ENSPSIG00000010173	-	100	89.189	Pelodiscus_sinensis
ENSMODG00000013617	-	100	86.719	ENSPMGG00000021256	polr2j	100	86.719	Periophthalmus_magnuspinnatus
ENSMODG00000013617	-	100	91.406	ENSPEMG00000015733	Polr2j	100	91.406	Peromyscus_maniculatus_bairdii
ENSMODG00000013617	-	100	91.406	ENSPCIG00000009026	-	100	91.406	Phascolarctos_cinereus
ENSMODG00000013617	-	100	86.719	ENSPFOG00000012001	polr2j	99	86.719	Poecilia_formosa
ENSMODG00000013617	-	100	86.719	ENSPLAG00000014075	polr2j	100	86.719	Poecilia_latipinna
ENSMODG00000013617	-	100	86.719	ENSPMEG00000020585	polr2j	100	86.719	Poecilia_mexicana
ENSMODG00000013617	-	100	86.719	ENSPREG00000015255	polr2j	100	86.719	Poecilia_reticulata
ENSMODG00000013617	-	100	91.406	ENSPCOG00000024573	-	100	91.406	Propithecus_coquereli
ENSMODG00000013617	-	85	99.083	ENSPVAG00000017770	-	62	99.083	Pteropus_vampyrus
ENSMODG00000013617	-	100	86.719	ENSPNYG00000014832	polr2j	100	86.719	Pundamilia_nyererei
ENSMODG00000013617	-	100	85.938	ENSPNAG00000016595	polr2j	100	85.938	Pygocentrus_nattereri
ENSMODG00000013617	-	100	91.406	ENSRNOG00000001430	Polr2j	100	91.406	Rattus_norvegicus
ENSMODG00000013617	-	100	91.406	ENSSBOG00000025579	-	100	91.406	Saimiri_boliviensis_boliviensis
ENSMODG00000013617	-	63	86.250	ENSSHAG00000010443	-	81	86.250	Sarcophilus_harrisii
ENSMODG00000013617	-	88	92.035	ENSSFOG00015003371	polr2j	86	92.035	Scleropages_formosus
ENSMODG00000013617	-	100	86.719	ENSSMAG00000006729	polr2j	100	86.719	Scophthalmus_maximus
ENSMODG00000013617	-	100	86.719	ENSSDUG00000018490	polr2j	100	86.719	Seriola_dumerili
ENSMODG00000013617	-	100	86.719	ENSSLDG00000022354	polr2j	100	86.719	Seriola_lalandi_dorsalis
ENSMODG00000013617	-	100	91.406	ENSSPUG00000010802	-	100	91.406	Sphenodon_punctatus
ENSMODG00000013617	-	100	86.719	ENSSPAG00000021953	polr2j	100	86.719	Stegastes_partitus
ENSMODG00000013617	-	100	75.781	ENSSSCG00000003703	-	83	75.781	Sus_scrofa
ENSMODG00000013617	-	100	91.406	ENSSSCG00000007688	-	100	91.406	Sus_scrofa
ENSMODG00000013617	-	63	86.250	ENSTGUG00000004510	-	100	86.250	Taeniopygia_guttata
ENSMODG00000013617	-	87	89.189	ENSTGUG00000004501	-	100	89.189	Taeniopygia_guttata
ENSMODG00000013617	-	100	87.500	ENSTRUG00000020842	polr2j	100	87.500	Takifugu_rubripes
ENSMODG00000013617	-	100	86.719	ENSTNIG00000002994	polr2j	100	86.719	Tetraodon_nigroviridis
ENSMODG00000013617	-	92	76.471	ENSTBEG00000005797	-	78	76.471	Tupaia_belangeri
ENSMODG00000013617	-	100	91.406	ENSUAMG00000011310	-	100	91.406	Ursus_americanus
ENSMODG00000013617	-	100	91.406	ENSUMAG00000012594	-	100	91.406	Ursus_maritimus
ENSMODG00000013617	-	100	89.844	ENSXETG00000001108	polr2j	100	89.844	Xenopus_tropicalis
ENSMODG00000013617	-	100	86.719	ENSXMAG00000012422	polr2j	100	86.719	Xiphophorus_maculatus