EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMODG00000014067 (Gene tree)
Gene ID: 100025358
Gene Symbol: USB1
Alias: C16orf57|FLJ13154|HVSL1|Mpn1
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Minus strand
Length: 6867 bases
Position: chr1:710093694-710100560
Accession: 100025358
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000017591	HVSL	PF09749.9	1.3e-62	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000017917	USB1-201	807	-	ENSMODP00000017591	268 (aa)	XP_001376322	F6TSW3

Gene Model

Click here to download ENSMODG00000014067's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000014067's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000014067	USB1	100	66.791	ENSG00000103005	USB1	100	73.364	Homo_sapiens
ENSMODG00000014067	USB1	99	49.117	ENSAPOG00000011942	usb1	77	53.917	Acanthochromis_polyacanthus
ENSMODG00000014067	USB1	100	63.082	ENSAMEG00000017205	USB1	100	65.556	Ailuropoda_melanoleuca
ENSMODG00000014067	USB1	86	51.948	ENSACIG00000012234	usb1	79	53.271	Amphilophus_citrinellus
ENSMODG00000014067	USB1	99	48.936	ENSAOCG00000014831	usb1	99	47.703	Amphiprion_ocellaris
ENSMODG00000014067	USB1	99	49.291	ENSAPEG00000000296	usb1	99	48.057	Amphiprion_percula
ENSMODG00000014067	USB1	89	50.201	ENSATEG00000009348	usb1	77	52.995	Anabas_testudineus
ENSMODG00000014067	USB1	84	67.699	ENSAPLG00000002756	USB1	97	67.727	Anas_platyrhynchos
ENSMODG00000014067	USB1	85	62.445	ENSACAG00000015481	USB1	96	62.727	Anolis_carolinensis
ENSMODG00000014067	USB1	100	66.045	ENSANAG00000035640	USB1	100	67.537	Aotus_nancymaae
ENSMODG00000014067	USB1	94	48.606	ENSACLG00000020586	usb1	86	48.606	Astatotilapia_calliptera
ENSMODG00000014067	USB1	83	51.570	ENSAMXG00000040146	usb1	72	50.917	Astyanax_mexicanus
ENSMODG00000014067	USB1	100	68.284	ENSBTAG00000015758	USB1	100	67.910	Bos_taurus
ENSMODG00000014067	USB1	100	67.164	ENSCJAG00000011733	USB1	100	68.284	Callithrix_jacchus
ENSMODG00000014067	USB1	99	66.545	ENSCAFG00000008556	USB1	73	65.091	Canis_familiaris
ENSMODG00000014067	USB1	99	67.164	ENSCAFG00020009263	USB1	82	72.811	Canis_lupus_dingo
ENSMODG00000014067	USB1	100	66.791	ENSCHIG00000024290	USB1	100	66.418	Capra_hircus
ENSMODG00000014067	USB1	100	65.934	ENSTSYG00000006997	USB1	100	65.934	Carlito_syrichta
ENSMODG00000014067	USB1	84	58.482	ENSCAPG00000009057	USB1	93	58.716	Cavia_aperea
ENSMODG00000014067	USB1	100	65.683	ENSCPOG00000014325	USB1	81	72.936	Cavia_porcellus
ENSMODG00000014067	USB1	100	66.045	ENSCCAG00000022132	USB1	100	67.537	Cebus_capucinus
ENSMODG00000014067	USB1	100	67.910	ENSCATG00000032174	USB1	100	69.403	Cercocebus_atys
ENSMODG00000014067	USB1	66	73.295	ENSCLAG00000007363	USB1	100	73.295	Chinchilla_lanigera
ENSMODG00000014067	USB1	100	67.537	ENSCSAG00000004783	USB1	100	69.030	Chlorocebus_sabaeus
ENSMODG00000014067	USB1	91	64.198	ENSCPBG00000026943	USB1	100	60.638	Chrysemys_picta_bellii
ENSMODG00000014067	USB1	99	66.541	ENSCANG00000037135	USB1	99	68.421	Colobus_angolensis_palliatus
ENSMODG00000014067	USB1	100	68.635	ENSCGRG00001011243	USB1	100	66.790	Cricetulus_griseus_chok1gshd
ENSMODG00000014067	USB1	100	68.635	ENSCGRG00000013252	USB1	100	66.790	Cricetulus_griseus_crigri
ENSMODG00000014067	USB1	99	48.188	ENSCSEG00000013881	usb1	99	46.182	Cynoglossus_semilaevis
ENSMODG00000014067	USB1	84	51.316	ENSCVAG00000009252	usb1	95	50.901	Cyprinodon_variegatus
ENSMODG00000014067	USB1	84	52.193	ENSDARG00000003841	usb1	79	51.584	Danio_rerio
ENSMODG00000014067	USB1	100	64.925	ENSDORG00000001888	Usb1	100	66.791	Dipodomys_ordii
ENSMODG00000014067	USB1	78	41.509	FBgn0037713	CG16790	79	41.509	Drosophila_melanogaster
ENSMODG00000014067	USB1	100	56.618	ENSETEG00000019682	USB1	100	56.618	Echinops_telfairi
ENSMODG00000014067	USB1	83	50.901	ENSEBUG00000005889	usb1	76	50.691	Eptatretus_burgeri
ENSMODG00000014067	USB1	100	67.537	ENSEASG00005005484	USB1	100	65.926	Equus_asinus_asinus
ENSMODG00000014067	USB1	100	67.910	ENSECAG00000019493	USB1	91	66.296	Equus_caballus
ENSMODG00000014067	USB1	66	65.341	ENSEEUG00000000154	USB1	66	65.341	Erinaceus_europaeus
ENSMODG00000014067	USB1	91	46.614	ENSELUG00000010974	usb1	81	48.182	Esox_lucius
ENSMODG00000014067	USB1	100	65.672	ENSFCAG00000002693	USB1	100	66.296	Felis_catus
ENSMODG00000014067	USB1	84	66.667	ENSFALG00000006876	USB1	80	67.925	Ficedula_albicollis
ENSMODG00000014067	USB1	100	68.519	ENSFDAG00000010052	USB1	100	67.407	Fukomys_damarensis
ENSMODG00000014067	USB1	86	48.560	ENSFHEG00000012334	usb1	73	53.804	Fundulus_heteroclitus
ENSMODG00000014067	USB1	83	52.000	ENSGMOG00000004228	usb1	97	52.055	Gadus_morhua
ENSMODG00000014067	USB1	83	66.964	ENSGALG00000035604	USB1	99	62.921	Gallus_gallus
ENSMODG00000014067	USB1	99	50.000	ENSGAFG00000021890	usb1	78	54.128	Gambusia_affinis
ENSMODG00000014067	USB1	84	48.661	ENSGACG00000003257	usb1	78	48.387	Gasterosteus_aculeatus
ENSMODG00000014067	USB1	100	62.816	ENSGAGG00000022572	USB1	100	62.816	Gopherus_agassizii
ENSMODG00000014067	USB1	100	66.418	ENSGGOG00000017147	USB1	100	67.910	Gorilla_gorilla
ENSMODG00000014067	USB1	94	48.606	ENSHBUG00000009823	usb1	87	48.606	Haplochromis_burtoni
ENSMODG00000014067	USB1	100	69.259	ENSHGLG00000016078	USB1	98	68.148	Heterocephalus_glaber_female
ENSMODG00000014067	USB1	100	69.259	ENSHGLG00100005562	USB1	98	68.148	Heterocephalus_glaber_male
ENSMODG00000014067	USB1	81	50.463	ENSHCOG00000015633	usb1	83	50.463	Hippocampus_comes
ENSMODG00000014067	USB1	99	46.758	ENSIPUG00000008601	usb1	82	51.899	Ictalurus_punctatus
ENSMODG00000014067	USB1	100	64.835	ENSSTOG00000007548	USB1	100	65.000	Ictidomys_tridecemlineatus
ENSMODG00000014067	USB1	100	67.528	ENSJJAG00000021859	Usb1	100	65.683	Jaculus_jaculus
ENSMODG00000014067	USB1	85	53.304	ENSKMAG00000007200	usb1	76	53.456	Kryptolebias_marmoratus
ENSMODG00000014067	USB1	86	48.052	ENSLBEG00000008452	usb1	62	53.005	Labrus_bergylta
ENSMODG00000014067	USB1	81	58.407	ENSLACG00000000105	USB1	64	63.978	Latimeria_chalumnae
ENSMODG00000014067	USB1	94	50.988	ENSLOCG00000000465	usb1	77	54.587	Lepisosteus_oculatus
ENSMODG00000014067	USB1	100	54.577	ENSLAFG00000002267	USB1	100	52.098	Loxodonta_africana
ENSMODG00000014067	USB1	100	67.537	ENSMFAG00000003926	USB1	100	69.030	Macaca_fascicularis
ENSMODG00000014067	USB1	100	67.537	ENSMMUG00000022669	USB1	100	69.030	Macaca_mulatta
ENSMODG00000014067	USB1	100	67.164	ENSMNEG00000042487	USB1	100	68.657	Macaca_nemestrina
ENSMODG00000014067	USB1	100	67.537	ENSMLEG00000028756	USB1	100	69.030	Mandrillus_leucophaeus
ENSMODG00000014067	USB1	99	48.561	ENSMAMG00000015092	usb1	78	52.995	Mastacembelus_armatus
ENSMODG00000014067	USB1	94	48.606	ENSMZEG00005010008	usb1	87	48.606	Maylandia_zebra
ENSMODG00000014067	USB1	100	67.159	ENSMAUG00000007832	Usb1	100	64.576	Mesocricetus_auratus
ENSMODG00000014067	USB1	100	64.925	ENSMICG00000004900	USB1	100	66.045	Microcebus_murinus
ENSMODG00000014067	USB1	100	66.421	ENSMOCG00000022647	Usb1	100	63.838	Microtus_ochrogaster
ENSMODG00000014067	USB1	84	51.339	ENSMMOG00000000490	usb1	84	51.613	Mola_mola
ENSMODG00000014067	USB1	90	49.402	ENSMALG00000005930	usb1	77	52.535	Monopterus_albus
ENSMODG00000014067	USB1	100	67.159	MGP_CAROLIEiJ_G0031421	Usb1	100	69.027	Mus_caroli
ENSMODG00000014067	USB1	100	66.790	ENSMUSG00000031792	Usb1	100	69.027	Mus_musculus
ENSMODG00000014067	USB1	100	65.683	MGP_PahariEiJ_G0023019	Usb1	100	70.940	Mus_pahari
ENSMODG00000014067	USB1	100	67.159	MGP_SPRETEiJ_G0032540	Usb1	100	65.314	Mus_spretus
ENSMODG00000014067	USB1	100	65.428	ENSMPUG00000004684	USB1	96	64.835	Mustela_putorius_furo
ENSMODG00000014067	USB1	85	72.926	ENSMLUG00000007400	USB1	94	73.853	Myotis_lucifugus
ENSMODG00000014067	USB1	100	67.037	ENSNGAG00000009703	Usb1	100	66.423	Nannospalax_galili
ENSMODG00000014067	USB1	94	44.223	ENSNBRG00000008747	usb1	99	49.533	Neolamprologus_brichardi
ENSMODG00000014067	USB1	94	66.403	ENSNLEG00000003340	USB1	100	67.984	Nomascus_leucogenys
ENSMODG00000014067	USB1	56	76.282	ENSMEUG00000003328	-	99	74.194	Notamacropus_eugenii
ENSMODG00000014067	USB1	87	49.569	ENSOPRG00000011803	USB1	94	50.000	Ochotona_princeps
ENSMODG00000014067	USB1	100	65.314	ENSODEG00000016214	USB1	100	63.838	Octodon_degus
ENSMODG00000014067	USB1	99	48.057	ENSONIG00000011063	usb1	87	48.606	Oreochromis_niloticus
ENSMODG00000014067	USB1	84	73.128	ENSOANG00000012118	USB1	92	73.059	Ornithorhynchus_anatinus
ENSMODG00000014067	USB1	84	51.786	ENSORLG00000012479	usb1	79	52.093	Oryzias_latipes
ENSMODG00000014067	USB1	84	51.339	ENSORLG00020018671	usb1	79	51.628	Oryzias_latipes_hni
ENSMODG00000014067	USB1	84	51.786	ENSORLG00015009679	usb1	79	52.093	Oryzias_latipes_hsok
ENSMODG00000014067	USB1	84	50.000	ENSOMEG00000012930	usb1	78	50.233	Oryzias_melastigma
ENSMODG00000014067	USB1	100	59.341	ENSOGAG00000003273	USB1	100	61.194	Otolemur_garnettii
ENSMODG00000014067	USB1	94	66.008	ENSOARG00000001107	USB1	84	71.560	Ovis_aries
ENSMODG00000014067	USB1	100	66.791	ENSPPAG00000042137	USB1	100	68.284	Pan_paniscus
ENSMODG00000014067	USB1	100	65.299	ENSPPRG00000024797	USB1	100	65.926	Panthera_pardus
ENSMODG00000014067	USB1	100	64.925	ENSPTIG00000007506	USB1	100	65.201	Panthera_tigris_altaica
ENSMODG00000014067	USB1	100	61.194	ENSPTRG00000008172	USB1	100	73.832	Pan_troglodytes
ENSMODG00000014067	USB1	100	67.537	ENSPANG00000025138	USB1	100	69.030	Papio_anubis
ENSMODG00000014067	USB1	95	50.775	ENSPKIG00000015109	usb1	73	53.917	Paramormyrops_kingsleyae
ENSMODG00000014067	USB1	84	53.778	ENSPSIG00000004305	USB1	97	53.425	Pelodiscus_sinensis
ENSMODG00000014067	USB1	83	51.570	ENSPMGG00000017725	usb1	83	51.389	Periophthalmus_magnuspinnatus
ENSMODG00000014067	USB1	100	66.545	ENSPEMG00000016183	Usb1	100	64.727	Peromyscus_maniculatus_bairdii
ENSMODG00000014067	USB1	87	53.191	ENSPMAG00000000462	usb1	93	53.846	Petromyzon_marinus
ENSMODG00000014067	USB1	99	49.822	ENSPFOG00000011130	usb1	99	47.687	Poecilia_formosa
ENSMODG00000014067	USB1	99	49.822	ENSPLAG00000009820	usb1	99	47.687	Poecilia_latipinna
ENSMODG00000014067	USB1	99	49.466	ENSPMEG00000006402	usb1	78	53.670	Poecilia_mexicana
ENSMODG00000014067	USB1	86	50.607	ENSPREG00000001047	usb1	74	55.978	Poecilia_reticulata
ENSMODG00000014067	USB1	95	62.353	ENSPPYG00000007401	USB1	100	63.922	Pongo_abelii
ENSMODG00000014067	USB1	100	64.234	ENSPCOG00000022612	USB1	100	66.052	Propithecus_coquereli
ENSMODG00000014067	USB1	100	64.925	ENSPVAG00000004613	USB1	100	64.925	Pteropus_vampyrus
ENSMODG00000014067	USB1	99	45.714	ENSPNYG00000022262	usb1	87	49.004	Pundamilia_nyererei
ENSMODG00000014067	USB1	95	50.000	ENSPNAG00000011736	usb1	74	52.511	Pygocentrus_nattereri
ENSMODG00000014067	USB1	100	67.897	ENSRNOG00000013216	Usb1	100	66.052	Rattus_norvegicus
ENSMODG00000014067	USB1	100	61.567	ENSRBIG00000044466	USB1	100	74.299	Rhinopithecus_bieti
ENSMODG00000014067	USB1	100	67.537	ENSRROG00000029211	USB1	100	69.403	Rhinopithecus_roxellana
ENSMODG00000014067	USB1	100	67.164	ENSSBOG00000029362	USB1	100	68.657	Saimiri_boliviensis_boliviensis
ENSMODG00000014067	USB1	81	81.193	ENSSHAG00000006993	USB1	99	76.494	Sarcophilus_harrisii
ENSMODG00000014067	USB1	91	53.333	ENSSFOG00015023663	usb1	68	56.682	Scleropages_formosus
ENSMODG00000014067	USB1	99	47.635	ENSSMAG00000015834	usb1	99	46.622	Scophthalmus_maximus
ENSMODG00000014067	USB1	84	53.571	ENSSDUG00000002949	usb1	80	53.456	Seriola_dumerili
ENSMODG00000014067	USB1	98	48.872	ENSSLDG00000014174	usb1	88	50.000	Seriola_lalandi_dorsalis
ENSMODG00000014067	USB1	80	69.626	ENSSPUG00000006741	USB1	100	69.626	Sphenodon_punctatus
ENSMODG00000014067	USB1	85	53.744	ENSSPAG00000007484	usb1	76	53.670	Stegastes_partitus
ENSMODG00000014067	USB1	100	65.799	ENSSSCG00000002807	USB1	100	66.421	Sus_scrofa
ENSMODG00000014067	USB1	79	68.868	ENSTGUG00000004792	USB1	95	63.071	Taeniopygia_guttata
ENSMODG00000014067	USB1	99	47.037	ENSTRUG00000021069	usb1	99	46.886	Takifugu_rubripes
ENSMODG00000014067	USB1	99	45.865	ENSTNIG00000000626	usb1	81	48.848	Tetraodon_nigroviridis
ENSMODG00000014067	USB1	85	48.908	ENSTBEG00000001507	USB1	94	49.083	Tupaia_belangeri
ENSMODG00000014067	USB1	100	62.724	ENSUAMG00000016823	USB1	100	64.103	Ursus_americanus
ENSMODG00000014067	USB1	80	70.093	ENSUMAG00000021369	USB1	100	70.093	Ursus_maritimus
ENSMODG00000014067	USB1	99	67.897	ENSVVUG00000023700	USB1	84	73.272	Vulpes_vulpes
ENSMODG00000014067	USB1	81	55.251	ENSXETG00000013795	usb1	88	55.251	Xenopus_tropicalis
ENSMODG00000014067	USB1	96	50.382	ENSXMAG00000024687	usb1	81	48.800	Xiphophorus_maculatus