EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMODG00000015177 (Gene tree)
Gene ID: 100025239
Gene Symbol: LSM2
Alias: C6orf28|G7b|YBL026W
Full Name: LSM2 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Minus strand
Length: 4216 bases
Position: chr2:267971091-267975306
Accession: 13940
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000018963	LSM	PF01423.22	4.8e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000019305	LSM2-201	288	-	ENSMODP00000018963	95 (aa)	-	F7BWI8

Gene Model

Click here to download ENSMODG00000015177's gene model file

Pathways

Pathway ID	Pathway Name	Source
mdo03018	RNA degradation	KEGG
mdo03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000015177's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMODG00000015177	LSM2	77	30.137	ENSMODG00000023328	LSM10	57	30.137
ENSMODG00000015177	LSM2	66	36.923	ENSMODG00000015044	-	67	33.721

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000015177	LSM2	99	98.936	ENSG00000204392	LSM2	99	98.936	Homo_sapiens
ENSMODG00000015177	LSM2	100	100.000	ENSAPOG00000017967	si:ch73-14h10.2	99	100.000	Acanthochromis_polyacanthus
ENSMODG00000015177	LSM2	99	98.936	ENSAMEG00000006483	LSM2	100	98.936	Ailuropoda_melanoleuca
ENSMODG00000015177	LSM2	100	100.000	ENSACIG00000007795	si:ch73-14h10.2	63	100.000	Amphilophus_citrinellus
ENSMODG00000015177	LSM2	100	100.000	ENSAOCG00000006949	si:ch73-14h10.2	79	100.000	Amphiprion_ocellaris
ENSMODG00000015177	LSM2	100	100.000	ENSAPEG00000020375	si:ch73-14h10.2	88	100.000	Amphiprion_percula
ENSMODG00000015177	LSM2	99	100.000	ENSATEG00000011376	si:ch73-14h10.2	99	100.000	Anabas_testudineus
ENSMODG00000015177	LSM2	100	98.947	ENSACAG00000017281	LSM2	91	98.947	Anolis_carolinensis
ENSMODG00000015177	LSM2	99	98.936	ENSANAG00000028372	LSM2	99	98.936	Aotus_nancymaae
ENSMODG00000015177	LSM2	96	80.220	ENSANAG00000028033	-	96	80.220	Aotus_nancymaae
ENSMODG00000015177	LSM2	99	100.000	ENSACLG00000024717	smx5	99	100.000	Astatotilapia_calliptera
ENSMODG00000015177	LSM2	99	100.000	ENSAMXG00000036868	si:ch73-14h10.2	99	100.000	Astyanax_mexicanus
ENSMODG00000015177	LSM2	99	98.936	ENSBTAG00000005634	LSM2	99	98.936	Bos_taurus
ENSMODG00000015177	LSM2	98	82.796	WBGene00001808	gut-2	96	82.796	Caenorhabditis_elegans
ENSMODG00000015177	LSM2	99	98.936	ENSCJAG00000040899	LSM2	99	98.936	Callithrix_jacchus
ENSMODG00000015177	LSM2	75	97.183	ENSCAFG00020016978	-	88	97.183	Canis_lupus_dingo
ENSMODG00000015177	LSM2	99	98.936	ENSCHIG00000016153	LSM2	100	98.936	Capra_hircus
ENSMODG00000015177	LSM2	99	98.936	ENSTSYG00000034844	LSM2	99	98.936	Carlito_syrichta
ENSMODG00000015177	LSM2	98	89.247	ENSTSYG00000030015	-	99	89.247	Carlito_syrichta
ENSMODG00000015177	LSM2	76	98.611	ENSCAPG00000009970	LSM2	92	98.611	Cavia_aperea
ENSMODG00000015177	LSM2	99	98.936	ENSCPOG00000021053	LSM2	99	98.936	Cavia_porcellus
ENSMODG00000015177	LSM2	99	98.936	ENSCCAG00000024276	LSM2	99	98.936	Cebus_capucinus
ENSMODG00000015177	LSM2	99	98.936	ENSCATG00000013737	LSM2	99	98.936	Cercocebus_atys
ENSMODG00000015177	LSM2	99	98.936	ENSCLAG00000008081	LSM2	99	98.936	Chinchilla_lanigera
ENSMODG00000015177	LSM2	99	98.936	ENSCSAG00000008800	LSM2	99	98.936	Chlorocebus_sabaeus
ENSMODG00000015177	LSM2	99	98.936	ENSCHOG00000007702	LSM2	99	98.936	Choloepus_hoffmanni
ENSMODG00000015177	LSM2	99	95.745	ENSCING00000022677	-	99	95.745	Ciona_intestinalis
ENSMODG00000015177	LSM2	99	98.936	ENSCANG00000039576	LSM2	99	98.936	Colobus_angolensis_palliatus
ENSMODG00000015177	LSM2	99	98.936	ENSCGRG00001013932	Lsm2	99	98.936	Cricetulus_griseus_chok1gshd
ENSMODG00000015177	LSM2	76	98.611	ENSCGRG00000013311	Lsm2	62	98.611	Cricetulus_griseus_crigri
ENSMODG00000015177	LSM2	99	100.000	ENSCSEG00000002911	si:ch73-14h10.2	99	100.000	Cynoglossus_semilaevis
ENSMODG00000015177	LSM2	100	100.000	ENSCVAG00000015394	si:ch73-14h10.2	90	100.000	Cyprinodon_variegatus
ENSMODG00000015177	LSM2	99	98.936	ENSDARG00000070867	smx5	99	98.936	Danio_rerio
ENSMODG00000015177	LSM2	99	98.936	ENSDNOG00000002633	LSM2	100	98.936	Dasypus_novemcinctus
ENSMODG00000015177	LSM2	99	98.936	ENSDORG00000026571	Lsm2	99	98.936	Dipodomys_ordii
ENSMODG00000015177	LSM2	95	95.556	FBgn0036277	CG10418	95	95.556	Drosophila_melanogaster
ENSMODG00000015177	LSM2	99	98.936	ENSEASG00005015670	LSM2	79	98.936	Equus_asinus_asinus
ENSMODG00000015177	LSM2	99	98.936	ENSECAG00000018791	LSM2	79	98.936	Equus_caballus
ENSMODG00000015177	LSM2	99	98.936	ENSELUG00000008241	smx5	99	98.936	Esox_lucius
ENSMODG00000015177	LSM2	99	98.936	ENSFCAG00000045887	LSM2	99	98.936	Felis_catus
ENSMODG00000015177	LSM2	99	98.936	ENSFDAG00000000390	LSM2	99	98.936	Fukomys_damarensis
ENSMODG00000015177	LSM2	99	96.875	ENSFHEG00000009619	si:ch73-14h10.2	100	96.875	Fundulus_heteroclitus
ENSMODG00000015177	LSM2	99	100.000	ENSGMOG00000019208	si:ch73-14h10.2	100	100.000	Gadus_morhua
ENSMODG00000015177	LSM2	99	100.000	ENSGAFG00000017286	si:ch73-14h10.2	99	100.000	Gambusia_affinis
ENSMODG00000015177	LSM2	99	100.000	ENSGACG00000003827	si:ch73-14h10.2	99	100.000	Gasterosteus_aculeatus
ENSMODG00000015177	LSM2	99	98.936	ENSGAGG00000012458	LSM2	99	98.936	Gopherus_agassizii
ENSMODG00000015177	LSM2	99	98.936	ENSGGOG00000011383	LSM2	99	98.936	Gorilla_gorilla
ENSMODG00000015177	LSM2	99	98.936	ENSHGLG00000011299	LSM2	99	98.936	Heterocephalus_glaber_female
ENSMODG00000015177	LSM2	99	98.936	ENSHGLG00100017194	LSM2	99	98.936	Heterocephalus_glaber_male
ENSMODG00000015177	LSM2	99	100.000	ENSHCOG00000014057	si:ch73-14h10.2	99	100.000	Hippocampus_comes
ENSMODG00000015177	LSM2	99	100.000	ENSIPUG00000010539	lsm2	99	100.000	Ictalurus_punctatus
ENSMODG00000015177	LSM2	99	98.936	ENSSTOG00000013144	LSM2	99	98.936	Ictidomys_tridecemlineatus
ENSMODG00000015177	LSM2	94	76.404	ENSJJAG00000019477	-	100	76.404	Jaculus_jaculus
ENSMODG00000015177	LSM2	99	100.000	ENSKMAG00000014909	si:ch73-14h10.2	99	100.000	Kryptolebias_marmoratus
ENSMODG00000015177	LSM2	100	98.947	ENSLBEG00000025781	si:ch73-14h10.2	99	98.947	Labrus_bergylta
ENSMODG00000015177	LSM2	99	100.000	ENSLACG00000015064	LSM2	99	100.000	Latimeria_chalumnae
ENSMODG00000015177	LSM2	99	100.000	ENSLOCG00000005228	si:ch73-14h10.2	99	100.000	Lepisosteus_oculatus
ENSMODG00000015177	LSM2	99	98.936	ENSLAFG00000016139	LSM2	100	98.936	Loxodonta_africana
ENSMODG00000015177	LSM2	99	98.936	ENSMFAG00000001016	LSM2	99	98.936	Macaca_fascicularis
ENSMODG00000015177	LSM2	99	98.936	ENSMMUG00000006832	LSM2	99	98.936	Macaca_mulatta
ENSMODG00000015177	LSM2	99	80.851	ENSMMUG00000045473	-	97	80.851	Macaca_mulatta
ENSMODG00000015177	LSM2	79	84.000	ENSMNEG00000040973	-	91	84.000	Macaca_nemestrina
ENSMODG00000015177	LSM2	99	98.936	ENSMNEG00000045355	LSM2	99	98.936	Macaca_nemestrina
ENSMODG00000015177	LSM2	99	98.936	ENSMLEG00000037369	-	99	98.936	Mandrillus_leucophaeus
ENSMODG00000015177	LSM2	99	79.787	ENSMLEG00000031181	-	97	79.787	Mandrillus_leucophaeus
ENSMODG00000015177	LSM2	99	100.000	ENSMAMG00000010053	si:ch73-14h10.2	72	100.000	Mastacembelus_armatus
ENSMODG00000015177	LSM2	99	97.917	ENSMZEG00005008688	si:ch73-14h10.2	100	97.917	Maylandia_zebra
ENSMODG00000015177	LSM2	99	98.936	ENSMAUG00000021966	Lsm2	99	98.936	Mesocricetus_auratus
ENSMODG00000015177	LSM2	76	77.778	ENSMICG00000046764	-	92	77.778	Microcebus_murinus
ENSMODG00000015177	LSM2	99	98.936	ENSMOCG00000015306	Lsm2	99	98.936	Microtus_ochrogaster
ENSMODG00000015177	LSM2	99	98.936	ENSMMOG00000005603	si:ch73-14h10.2	100	98.936	Mola_mola
ENSMODG00000015177	LSM2	99	100.000	ENSMALG00000016490	si:ch73-14h10.2	99	100.000	Monopterus_albus
ENSMODG00000015177	LSM2	99	98.936	MGP_CAROLIEiJ_G0021490	Lsm2	99	98.936	Mus_caroli
ENSMODG00000015177	LSM2	99	98.936	ENSMUSG00000007050	Lsm2	99	98.936	Mus_musculus
ENSMODG00000015177	LSM2	99	98.936	MGP_PahariEiJ_G0020485	Lsm2	99	98.936	Mus_pahari
ENSMODG00000015177	LSM2	99	98.936	MGP_SPRETEiJ_G0022395	Lsm2	99	98.936	Mus_spretus
ENSMODG00000015177	LSM2	99	98.936	ENSNGAG00000003997	Lsm2	99	98.936	Nannospalax_galili
ENSMODG00000015177	LSM2	99	97.917	ENSNBRG00000012904	si:ch73-14h10.2	100	97.917	Neolamprologus_brichardi
ENSMODG00000015177	LSM2	99	98.936	ENSNLEG00000035542	LSM2	99	98.936	Nomascus_leucogenys
ENSMODG00000015177	LSM2	75	100.000	ENSMEUG00000003419	LSM2	100	100.000	Notamacropus_eugenii
ENSMODG00000015177	LSM2	99	98.936	ENSOPRG00000003668	LSM2	99	98.936	Ochotona_princeps
ENSMODG00000015177	LSM2	99	98.936	ENSODEG00000017583	LSM2	99	98.936	Octodon_degus
ENSMODG00000015177	LSM2	99	100.000	ENSONIG00000019321	si:ch73-14h10.2	99	100.000	Oreochromis_niloticus
ENSMODG00000015177	LSM2	99	98.936	ENSOANG00000005398	LSM2	100	98.936	Ornithorhynchus_anatinus
ENSMODG00000015177	LSM2	99	98.936	ENSOCUG00000002583	LSM2	99	98.936	Oryctolagus_cuniculus
ENSMODG00000015177	LSM2	99	100.000	ENSORLG00000029858	si:ch73-14h10.2	99	100.000	Oryzias_latipes
ENSMODG00000015177	LSM2	99	76.423	ENSORLG00015000465	si:ch73-14h10.2	99	76.423	Oryzias_latipes_hsok
ENSMODG00000015177	LSM2	99	100.000	ENSOMEG00000002892	si:ch73-14h10.2	99	100.000	Oryzias_melastigma
ENSMODG00000015177	LSM2	99	98.936	ENSOARG00000004575	LSM2	100	98.936	Ovis_aries
ENSMODG00000015177	LSM2	79	85.333	ENSPPAG00000043941	-	93	85.333	Pan_paniscus
ENSMODG00000015177	LSM2	99	98.936	ENSPPAG00000032431	LSM2	99	98.936	Pan_paniscus
ENSMODG00000015177	LSM2	99	98.936	ENSPPRG00000015353	LSM2	99	98.936	Panthera_pardus
ENSMODG00000015177	LSM2	99	98.936	ENSPTIG00000010303	LSM2	99	98.936	Panthera_tigris_altaica
ENSMODG00000015177	LSM2	99	98.936	ENSPTRG00000017986	LSM2	99	98.936	Pan_troglodytes
ENSMODG00000015177	LSM2	99	98.936	ENSPANG00000024577	LSM2	99	98.936	Papio_anubis
ENSMODG00000015177	LSM2	99	100.000	ENSPKIG00000007028	si:ch73-14h10.2	99	100.000	Paramormyrops_kingsleyae
ENSMODG00000015177	LSM2	100	98.947	ENSPSIG00000004458	LSM2	79	98.947	Pelodiscus_sinensis
ENSMODG00000015177	LSM2	99	97.872	ENSPMGG00000018511	si:ch73-14h10.2	100	97.872	Periophthalmus_magnuspinnatus
ENSMODG00000015177	LSM2	99	100.000	ENSPCIG00000018560	-	95	100.000	Phascolarctos_cinereus
ENSMODG00000015177	LSM2	99	100.000	ENSPFOG00000001621	si:ch73-14h10.2	99	100.000	Poecilia_formosa
ENSMODG00000015177	LSM2	99	100.000	ENSPLAG00000017165	si:ch73-14h10.2	99	100.000	Poecilia_latipinna
ENSMODG00000015177	LSM2	99	100.000	ENSPMEG00000019574	si:ch73-14h10.2	99	100.000	Poecilia_mexicana
ENSMODG00000015177	LSM2	99	98.936	ENSPREG00000016534	si:ch73-14h10.2	100	98.936	Poecilia_reticulata
ENSMODG00000015177	LSM2	99	98.936	ENSPPYG00000016461	-	53	98.936	Pongo_abelii
ENSMODG00000015177	LSM2	99	98.936	ENSPCAG00000013737	LSM2	99	98.936	Procavia_capensis
ENSMODG00000015177	LSM2	99	98.936	ENSPCOG00000020134	LSM2	99	98.936	Propithecus_coquereli
ENSMODG00000015177	LSM2	99	98.936	ENSPVAG00000012405	LSM2	99	98.936	Pteropus_vampyrus
ENSMODG00000015177	LSM2	99	100.000	ENSPNYG00000019298	smx5	99	100.000	Pundamilia_nyererei
ENSMODG00000015177	LSM2	99	100.000	ENSPNAG00000027769	si:ch73-14h10.2	99	100.000	Pygocentrus_nattereri
ENSMODG00000015177	LSM2	56	92.453	ENSRNOG00000011065	AC126899.1	76	92.453	Rattus_norvegicus
ENSMODG00000015177	LSM2	99	98.936	ENSRNOG00000048725	Lsm2	99	98.936	Rattus_norvegicus
ENSMODG00000015177	LSM2	99	98.936	ENSRBIG00000010172	LSM2	99	98.936	Rhinopithecus_bieti
ENSMODG00000015177	LSM2	79	85.333	ENSRBIG00000011356	-	91	85.333	Rhinopithecus_bieti
ENSMODG00000015177	LSM2	79	85.333	ENSRROG00000030708	-	91	85.333	Rhinopithecus_roxellana
ENSMODG00000015177	LSM2	99	98.936	ENSRROG00000030345	LSM2	99	98.936	Rhinopithecus_roxellana
ENSMODG00000015177	LSM2	99	63.830	YBL026W	LSM2	99	63.830	Saccharomyces_cerevisiae
ENSMODG00000015177	LSM2	99	98.936	ENSSBOG00000018943	LSM2	99	98.936	Saimiri_boliviensis_boliviensis
ENSMODG00000015177	LSM2	99	100.000	ENSSFOG00015006734	lsm2	99	100.000	Scleropages_formosus
ENSMODG00000015177	LSM2	100	98.947	ENSSMAG00000001122	si:ch73-14h10.2	99	98.936	Scophthalmus_maximus
ENSMODG00000015177	LSM2	99	100.000	ENSSDUG00000021605	smx5	99	100.000	Seriola_dumerili
ENSMODG00000015177	LSM2	99	100.000	ENSSLDG00000002765	si:ch73-14h10.2	99	100.000	Seriola_lalandi_dorsalis
ENSMODG00000015177	LSM2	99	100.000	ENSSPUG00000009631	LSM2	99	100.000	Sphenodon_punctatus
ENSMODG00000015177	LSM2	99	100.000	ENSSPAG00000016904	si:ch73-14h10.2	99	100.000	Stegastes_partitus
ENSMODG00000015177	LSM2	99	98.936	ENSSSCG00000039021	LSM2	99	98.936	Sus_scrofa
ENSMODG00000015177	LSM2	99	98.936	ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	Takifugu_rubripes
ENSMODG00000015177	LSM2	71	95.522	ENSTNIG00000013770	si:ch73-14h10.2	100	95.522	Tetraodon_nigroviridis
ENSMODG00000015177	LSM2	99	98.936	ENSTTRG00000014131	LSM2	99	98.936	Tursiops_truncatus
ENSMODG00000015177	LSM2	99	98.936	ENSUMAG00000013425	LSM2	65	98.936	Ursus_maritimus
ENSMODG00000015177	LSM2	99	98.936	ENSVPAG00000001761	LSM2	100	98.936	Vicugna_pacos
ENSMODG00000015177	LSM2	79	97.333	ENSVVUG00000016264	-	93	97.333	Vulpes_vulpes
ENSMODG00000015177	LSM2	99	98.936	ENSXETG00000024077	lsm2	99	98.936	Xenopus_tropicalis
ENSMODG00000015177	LSM2	99	98.936	ENSXCOG00000006078	si:ch73-14h10.2	100	98.936	Xiphophorus_couchianus
ENSMODG00000015177	LSM2	99	98.936	ENSXMAG00000028018	si:ch73-14h10.2	100	98.936	Xiphophorus_maculatus