EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMODG00000015182 (Gene tree)
Gene ID: 100014541
Gene Symbol: SND1
Alias: TDRD11|p100
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Plus strand
Length: 551382 bases
Position: chr8:187324097-187875478
Accession: 100014541
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000018972	TUDOR	PF00567.24	4.8e-27	1	1
ENSMODP00000018972	SNase	PF00565.17	3.1e-70	1	5
ENSMODP00000018972	SNase	PF00565.17	3.1e-70	2	5
ENSMODP00000018972	SNase	PF00565.17	3.1e-70	3	5
ENSMODP00000018972	SNase	PF00565.17	3.1e-70	4	5
ENSMODP00000018972	SNase	PF00565.17	3.1e-70	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000019314	SND1-201	4120	-	ENSMODP00000018972	910 (aa)	XP_001366230	F7BW23

Gene Model

Click here to download ENSMODG00000015182's gene model file

Pathways

Pathway ID	Pathway Name	Source
mdo05203	Viral carcinogenesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000015182's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000015182	SND1	99	95.652	ENSG00000197157	SND1	99	95.652	Homo_sapiens
ENSMODG00000015182	SND1	100	83.224	ENSAPOG00000017599	snd1	99	84.093	Acanthochromis_polyacanthus
ENSMODG00000015182	SND1	100	95.724	ENSAMEG00000004664	SND1	93	95.773	Ailuropoda_melanoleuca
ENSMODG00000015182	SND1	98	81.411	ENSACIG00000003551	snd1	99	81.292	Amphilophus_citrinellus
ENSMODG00000015182	SND1	100	83.004	ENSAOCG00000014166	snd1	99	83.871	Amphiprion_ocellaris
ENSMODG00000015182	SND1	100	83.004	ENSAPEG00000007067	snd1	99	83.871	Amphiprion_percula
ENSMODG00000015182	SND1	98	82.235	ENSATEG00000018475	snd1	88	83.580	Anabas_testudineus
ENSMODG00000015182	SND1	99	95.875	ENSANAG00000034463	SND1	99	96.041	Aotus_nancymaae
ENSMODG00000015182	SND1	100	82.895	ENSACLG00000022897	snd1	98	83.929	Astatotilapia_calliptera
ENSMODG00000015182	SND1	99	83.718	ENSAMXG00000016318	snd1	98	84.298	Astyanax_mexicanus
ENSMODG00000015182	SND1	99	95.987	ENSBTAG00000010692	SND1	99	95.987	Bos_taurus
ENSMODG00000015182	SND1	98	46.542	WBGene00006626	tsn-1	98	46.872	Caenorhabditis_elegans
ENSMODG00000015182	SND1	99	95.875	ENSCJAG00000017668	SND1	99	96.041	Callithrix_jacchus
ENSMODG00000015182	SND1	100	95.934	ENSCAFG00000001700	SND1	99	95.987	Canis_familiaris
ENSMODG00000015182	SND1	100	95.934	ENSCAFG00020021639	SND1	99	95.987	Canis_lupus_dingo
ENSMODG00000015182	SND1	99	95.987	ENSCHIG00000023390	SND1	99	95.987	Capra_hircus
ENSMODG00000015182	SND1	73	95.246	ENSTSYG00000004979	SND1	96	95.246	Carlito_syrichta
ENSMODG00000015182	SND1	99	82.908	ENSCAPG00000010677	SND1	98	82.889	Cavia_aperea
ENSMODG00000015182	SND1	99	95.095	ENSCPOG00000006251	SND1	99	95.095	Cavia_porcellus
ENSMODG00000015182	SND1	100	96.154	ENSCCAG00000036847	SND1	100	96.154	Cebus_capucinus
ENSMODG00000015182	SND1	99	95.987	ENSCATG00000035214	SND1	99	96.154	Cercocebus_atys
ENSMODG00000015182	SND1	99	95.206	ENSCLAG00000011796	SND1	99	95.206	Chinchilla_lanigera
ENSMODG00000015182	SND1	99	95.987	ENSCSAG00000010182	SND1	99	95.987	Chlorocebus_sabaeus
ENSMODG00000015182	SND1	78	89.216	ENSCHOG00000002218	SND1	86	89.216	Choloepus_hoffmanni
ENSMODG00000015182	SND1	100	91.758	ENSCPBG00000018094	SND1	98	92.713	Chrysemys_picta_bellii
ENSMODG00000015182	SND1	98	57.522	ENSCING00000000524	-	98	57.522	Ciona_intestinalis
ENSMODG00000015182	SND1	99	57.930	ENSCSAVG00000008807	-	99	58.075	Ciona_savignyi
ENSMODG00000015182	SND1	99	95.987	ENSCANG00000035119	SND1	99	95.987	Colobus_angolensis_palliatus
ENSMODG00000015182	SND1	99	94.426	ENSCGRG00001022514	Snd1	99	94.426	Cricetulus_griseus_chok1gshd
ENSMODG00000015182	SND1	97	94.570	ENSCGRG00000012277	Snd1	99	94.570	Cricetulus_griseus_crigri
ENSMODG00000015182	SND1	98	83.669	ENSCSEG00000008661	snd1	98	83.669	Cynoglossus_semilaevis
ENSMODG00000015182	SND1	100	83.333	ENSCVAG00000010316	snd1	100	82.874	Cyprinodon_variegatus
ENSMODG00000015182	SND1	100	84.009	ENSDARG00000006766	snd1	97	87.004	Danio_rerio
ENSMODG00000015182	SND1	97	93.236	ENSDNOG00000006795	SND1	100	93.236	Dasypus_novemcinctus
ENSMODG00000015182	SND1	99	95.429	ENSDORG00000000336	Snd1	99	95.429	Dipodomys_ordii
ENSMODG00000015182	SND1	98	50.054	FBgn0035121	Tudor-SN	98	50.163	Drosophila_melanogaster
ENSMODG00000015182	SND1	90	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSMODG00000015182	SND1	57	66.142	ENSEBUG00000014201	-	84	76.503	Eptatretus_burgeri
ENSMODG00000015182	SND1	99	94.304	ENSEASG00005008513	SND1	99	94.304	Equus_asinus_asinus
ENSMODG00000015182	SND1	99	95.875	ENSECAG00000011451	SND1	99	95.875	Equus_caballus
ENSMODG00000015182	SND1	100	83.956	ENSEEUG00000014737	SND1	99	83.835	Erinaceus_europaeus
ENSMODG00000015182	SND1	99	81.579	ENSELUG00000001805	snd1	95	82.497	Esox_lucius
ENSMODG00000015182	SND1	100	95.934	ENSFCAG00000008289	SND1	99	95.987	Felis_catus
ENSMODG00000015182	SND1	98	95.307	ENSFDAG00000015881	SND1	99	95.318	Fukomys_damarensis
ENSMODG00000015182	SND1	99	81.446	ENSFHEG00000004093	snd1	97	83.935	Fundulus_heteroclitus
ENSMODG00000015182	SND1	72	74.294	ENSGMOG00000018932	snd1	64	74.294	Gadus_morhua
ENSMODG00000015182	SND1	100	83.553	ENSGAFG00000008421	snd1	99	84.427	Gambusia_affinis
ENSMODG00000015182	SND1	100	53.963	ENSGACG00000019793	snd1	98	54.425	Gasterosteus_aculeatus
ENSMODG00000015182	SND1	99	95.875	ENSGGOG00000009614	SND1	99	96.041	Gorilla_gorilla
ENSMODG00000015182	SND1	99	83.260	ENSHBUG00000019135	snd1	99	83.929	Haplochromis_burtoni
ENSMODG00000015182	SND1	99	95.206	ENSHGLG00000003618	SND1	99	95.206	Heterocephalus_glaber_female
ENSMODG00000015182	SND1	99	94.807	ENSHGLG00100012449	SND1	99	95.206	Heterocephalus_glaber_male
ENSMODG00000015182	SND1	100	82.018	ENSHCOG00000005266	snd1	98	83.221	Hippocampus_comes
ENSMODG00000015182	SND1	100	82.057	ENSIPUG00000013279	snd1	98	83.073	Ictalurus_punctatus
ENSMODG00000015182	SND1	99	95.541	ENSSTOG00000002140	SND1	99	95.541	Ictidomys_tridecemlineatus
ENSMODG00000015182	SND1	99	95.764	ENSJJAG00000009561	Snd1	99	95.764	Jaculus_jaculus
ENSMODG00000015182	SND1	100	83.333	ENSKMAG00000016997	snd1	98	84.340	Kryptolebias_marmoratus
ENSMODG00000015182	SND1	100	83.893	ENSLBEG00000013563	snd1	99	82.647	Labrus_bergylta
ENSMODG00000015182	SND1	99	85.116	ENSLOCG00000015537	snd1	98	85.116	Lepisosteus_oculatus
ENSMODG00000015182	SND1	100	95.495	ENSLAFG00000009696	SND1	99	95.652	Loxodonta_africana
ENSMODG00000015182	SND1	99	95.987	ENSMFAG00000038114	SND1	99	96.154	Macaca_fascicularis
ENSMODG00000015182	SND1	99	95.987	ENSMMUG00000015432	SND1	99	95.987	Macaca_mulatta
ENSMODG00000015182	SND1	99	95.987	ENSMNEG00000039808	SND1	100	96.158	Macaca_nemestrina
ENSMODG00000015182	SND1	99	95.875	ENSMLEG00000029040	SND1	100	96.045	Mandrillus_leucophaeus
ENSMODG00000015182	SND1	99	82.911	ENSMAMG00000011739	snd1	98	83.594	Mastacembelus_armatus
ENSMODG00000015182	SND1	100	82.895	ENSMZEG00005005681	snd1	98	83.929	Maylandia_zebra
ENSMODG00000015182	SND1	99	95.652	ENSMICG00000000097	SND1	99	95.652	Microcebus_murinus
ENSMODG00000015182	SND1	99	94.983	ENSMOCG00000005040	Snd1	99	94.983	Microtus_ochrogaster
ENSMODG00000015182	SND1	100	82.675	ENSMMOG00000001795	snd1	99	83.537	Mola_mola
ENSMODG00000015182	SND1	100	82.566	ENSMALG00000012071	snd1	98	83.371	Monopterus_albus
ENSMODG00000015182	SND1	98	94.860	MGP_CAROLIEiJ_G0028159	Snd1	99	94.872	Mus_caroli
ENSMODG00000015182	SND1	98	94.749	ENSMUSG00000001424	Snd1	99	94.760	Mus_musculus
ENSMODG00000015182	SND1	98	94.749	MGP_PahariEiJ_G0021917	Snd1	99	94.760	Mus_pahari
ENSMODG00000015182	SND1	98	94.860	MGP_SPRETEiJ_G0029159	Snd1	99	94.872	Mus_spretus
ENSMODG00000015182	SND1	100	95.275	ENSMPUG00000006545	SND1	99	95.429	Mustela_putorius_furo
ENSMODG00000015182	SND1	97	94.525	ENSMLUG00000017130	SND1	99	94.525	Myotis_lucifugus
ENSMODG00000015182	SND1	99	95.095	ENSNGAG00000011186	Snd1	99	95.095	Nannospalax_galili
ENSMODG00000015182	SND1	100	82.785	ENSNBRG00000006681	snd1	98	83.817	Neolamprologus_brichardi
ENSMODG00000015182	SND1	100	95.824	ENSNLEG00000012263	SND1	100	96.045	Nomascus_leucogenys
ENSMODG00000015182	SND1	91	100.000	ENSOPRG00000013405	SND1	91	100.000	Ochotona_princeps
ENSMODG00000015182	SND1	99	95.318	ENSODEG00000011502	SND1	99	95.318	Octodon_degus
ENSMODG00000015182	SND1	100	82.675	ENSONIG00000011481	snd1	96	83.705	Oreochromis_niloticus
ENSMODG00000015182	SND1	98	95.158	ENSOANG00000000817	SND1	99	94.426	Ornithorhynchus_anatinus
ENSMODG00000015182	SND1	100	94.615	ENSOCUG00000001620	SND1	99	94.649	Oryctolagus_cuniculus
ENSMODG00000015182	SND1	98	83.240	ENSORLG00000015201	snd1	98	83.240	Oryzias_latipes
ENSMODG00000015182	SND1	98	83.352	ENSORLG00020013991	snd1	98	83.352	Oryzias_latipes_hni
ENSMODG00000015182	SND1	98	83.352	ENSORLG00015012436	snd1	98	83.352	Oryzias_latipes_hsok
ENSMODG00000015182	SND1	100	82.456	ENSOMEG00000006406	snd1	98	83.669	Oryzias_melastigma
ENSMODG00000015182	SND1	99	95.551	ENSOGAG00000013356	SND1	93	95.551	Otolemur_garnettii
ENSMODG00000015182	SND1	97	93.446	ENSOARG00000002149	SND1	100	93.446	Ovis_aries
ENSMODG00000015182	SND1	99	95.764	ENSPPAG00000042947	SND1	99	95.764	Pan_paniscus
ENSMODG00000015182	SND1	100	95.934	ENSPPRG00000004494	SND1	99	95.987	Panthera_pardus
ENSMODG00000015182	SND1	100	95.824	ENSPTIG00000014214	SND1	99	95.875	Panthera_tigris_altaica
ENSMODG00000015182	SND1	99	95.764	ENSPTRG00000023911	SND1	99	95.928	Pan_troglodytes
ENSMODG00000015182	SND1	97	96.154	ENSPANG00000011997	SND1	99	96.154	Papio_anubis
ENSMODG00000015182	SND1	99	81.257	ENSPKIG00000023494	snd1	98	81.576	Paramormyrops_kingsleyae
ENSMODG00000015182	SND1	92	82.156	ENSPMGG00000003629	snd1	100	82.156	Periophthalmus_magnuspinnatus
ENSMODG00000015182	SND1	99	94.872	ENSPEMG00000010240	Snd1	99	94.872	Peromyscus_maniculatus_bairdii
ENSMODG00000015182	SND1	97	73.672	ENSPMAG00000007915	-	99	73.672	Petromyzon_marinus
ENSMODG00000015182	SND1	100	99.011	ENSPCIG00000011561	SND1	100	99.011	Phascolarctos_cinereus
ENSMODG00000015182	SND1	100	83.004	ENSPFOG00000001557	snd1	99	83.871	Poecilia_formosa
ENSMODG00000015182	SND1	100	83.004	ENSPLAG00000018459	snd1	96	83.871	Poecilia_latipinna
ENSMODG00000015182	SND1	100	83.443	ENSPMEG00000006803	snd1	99	84.316	Poecilia_mexicana
ENSMODG00000015182	SND1	100	83.333	ENSPREG00000002189	snd1	99	84.205	Poecilia_reticulata
ENSMODG00000015182	SND1	92	95.460	ENSPPYG00000017972	SND1	98	95.460	Pongo_abelii
ENSMODG00000015182	SND1	100	84.286	ENSPCAG00000011305	SND1	99	84.169	Procavia_capensis
ENSMODG00000015182	SND1	99	95.652	ENSPCOG00000026791	SND1	100	95.819	Propithecus_coquereli
ENSMODG00000015182	SND1	99	93.868	ENSPVAG00000013945	SND1	99	93.868	Pteropus_vampyrus
ENSMODG00000015182	SND1	100	82.895	ENSPNYG00000000932	snd1	98	83.929	Pundamilia_nyererei
ENSMODG00000015182	SND1	100	83.042	ENSPNAG00000001206	snd1	98	84.000	Pygocentrus_nattereri
ENSMODG00000015182	SND1	98	94.637	ENSRNOG00000031173	Snd1	99	94.649	Rattus_norvegicus
ENSMODG00000015182	SND1	73	95.113	ENSRBIG00000027782	-	93	95.247	Rhinopithecus_bieti
ENSMODG00000015182	SND1	99	95.987	ENSRROG00000033020	SND1	99	95.987	Rhinopithecus_roxellana
ENSMODG00000015182	SND1	99	95.875	ENSSBOG00000032461	SND1	99	96.041	Saimiri_boliviensis_boliviensis
ENSMODG00000015182	SND1	98	94.932	ENSSHAG00000015359	SND1	100	94.932	Sarcophilus_harrisii
ENSMODG00000015182	SND1	100	81.610	ENSSFOG00015001103	snd1	98	82.686	Scleropages_formosus
ENSMODG00000015182	SND1	98	83.110	ENSSMAG00000001932	snd1	93	82.851	Scophthalmus_maximus
ENSMODG00000015182	SND1	100	83.004	ENSSDUG00000002699	snd1	92	83.871	Seriola_dumerili
ENSMODG00000015182	SND1	100	75.877	ENSSLDG00000001950	snd1	98	76.641	Seriola_lalandi_dorsalis
ENSMODG00000015182	SND1	86	97.170	ENSSARG00000004877	SND1	92	97.170	Sorex_araneus
ENSMODG00000015182	SND1	70	87.478	ENSSPUG00000017586	SND1	96	87.478	Sphenodon_punctatus
ENSMODG00000015182	SND1	73	83.926	ENSSPAG00000021398	snd1	96	86.038	Stegastes_partitus
ENSMODG00000015182	SND1	99	95.764	ENSSSCG00000016590	SND1	99	95.764	Sus_scrofa
ENSMODG00000015182	SND1	99	82.709	ENSTRUG00000014067	snd1	98	83.221	Takifugu_rubripes
ENSMODG00000015182	SND1	100	82.932	ENSTNIG00000011019	snd1	98	83.669	Tetraodon_nigroviridis
ENSMODG00000015182	SND1	93	89.858	ENSTBEG00000003999	SND1	100	89.858	Tupaia_belangeri
ENSMODG00000015182	SND1	99	91.304	ENSTTRG00000006059	SND1	99	91.304	Tursiops_truncatus
ENSMODG00000015182	SND1	67	84.536	ENSUAMG00000002820	-	86	84.267	Ursus_americanus
ENSMODG00000015182	SND1	91	96.981	ENSUAMG00000005604	-	94	96.981	Ursus_americanus
ENSMODG00000015182	SND1	100	95.714	ENSUMAG00000005960	SND1	99	95.764	Ursus_maritimus
ENSMODG00000015182	SND1	77	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSMODG00000015182	SND1	100	95.934	ENSVVUG00000007226	SND1	99	95.987	Vulpes_vulpes
ENSMODG00000015182	SND1	97	84.294	ENSXETG00000023043	snd1	100	84.211	Xenopus_tropicalis
ENSMODG00000015182	SND1	92	80.641	ENSXCOG00000013629	snd1	99	80.641	Xiphophorus_couchianus
ENSMODG00000015182	SND1	100	83.553	ENSXMAG00000011469	snd1	99	84.427	Xiphophorus_maculatus