EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMODG00000015544 (Gene tree)
Gene ID: 100013505
Gene Symbol: SMARCAL1
Alias: HARP|HHARP
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Monodelphis_domestica
Status: putative
Strand: Minus strand
Length: 76590 bases
Position: chr7:176694148-176770737
Accession: 100013505
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMODP00000019401	ResIII	PF04851.15	4.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMODT00000019749	SMARCAL1-201	4186	XM_001367852	ENSMODP00000019401	965 (aa)	XP_001367889	F6SKP2

Gene Model

Click here to download ENSMODG00000015544's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMODG00000015544's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMODG00000015544	SMARCAL1	99	60.758	ENSG00000138375	SMARCAL1	99	75.000	Homo_sapiens
ENSMODG00000015544	SMARCAL1	75	59.807	ENSAPOG00000020156	SMARCAL1	99	50.668	Acanthochromis_polyacanthus
ENSMODG00000015544	SMARCAL1	72	61.254	ENSACIG00000001500	smarcal1	89	61.254	Amphilophus_citrinellus
ENSMODG00000015544	SMARCAL1	71	61.718	ENSAOCG00000014266	SMARCAL1	98	52.039	Amphiprion_ocellaris
ENSMODG00000015544	SMARCAL1	75	59.751	ENSAPEG00000015861	SMARCAL1	78	59.751	Amphiprion_percula
ENSMODG00000015544	SMARCAL1	80	57.732	ENSATEG00000020624	SMARCAL1	99	51.033	Anabas_testudineus
ENSMODG00000015544	SMARCAL1	99	54.059	ENSAPLG00000009864	SMARCAL1	99	54.950	Anas_platyrhynchos
ENSMODG00000015544	SMARCAL1	99	55.268	ENSACAG00000004612	SMARCAL1	99	55.268	Anolis_carolinensis
ENSMODG00000015544	SMARCAL1	71	61.974	ENSACLG00000015990	SMARCAL1	97	51.429	Astatotilapia_calliptera
ENSMODG00000015544	SMARCAL1	99	52.228	ENSAMXG00000003350	smarcal1	99	52.228	Astyanax_mexicanus
ENSMODG00000015544	SMARCAL1	96	68.553	ENSCPBG00000013599	SMARCAL1	100	68.553	Chrysemys_picta_bellii
ENSMODG00000015544	SMARCAL1	66	48.062	ENSCING00000009308	-	100	48.062	Ciona_intestinalis
ENSMODG00000015544	SMARCAL1	72	60.576	ENSCSEG00000010785	SMARCAL1	98	51.178	Cynoglossus_semilaevis
ENSMODG00000015544	SMARCAL1	99	52.169	ENSCVAG00000018780	SMARCAL1	100	52.169	Cyprinodon_variegatus
ENSMODG00000015544	SMARCAL1	55	52.099	ENSEBUG00000011906	SMARCAL1	73	52.099	Eptatretus_burgeri
ENSMODG00000015544	SMARCAL1	74	59.724	ENSELUG00000010440	-	94	50.494	Esox_lucius
ENSMODG00000015544	SMARCAL1	99	54.645	ENSFALG00000003981	SMARCAL1	99	54.945	Ficedula_albicollis
ENSMODG00000015544	SMARCAL1	75	59.474	ENSFHEG00000008380	SMARCAL1	99	51.187	Fundulus_heteroclitus
ENSMODG00000015544	SMARCAL1	54	61.502	ENSGMOG00000010034	smarcal1	88	61.502	Gadus_morhua
ENSMODG00000015544	SMARCAL1	99	56.294	ENSGALG00000011475	RPL37A	99	56.439	Gallus_gallus
ENSMODG00000015544	SMARCAL1	68	63.569	ENSGACG00000006073	SMARCAL1	100	66.480	Gasterosteus_aculeatus
ENSMODG00000015544	SMARCAL1	92	58.521	ENSGAGG00000015660	SMARCAL1	99	58.521	Gopherus_agassizii
ENSMODG00000015544	SMARCAL1	96	51.544	ENSHBUG00000002973	smarcal1	97	51.534	Haplochromis_burtoni
ENSMODG00000015544	SMARCAL1	72	60.288	ENSHCOG00000017921	smarcal1	82	60.288	Hippocampus_comes
ENSMODG00000015544	SMARCAL1	71	60.088	ENSKMAG00000012023	SMARCAL1	99	49.946	Kryptolebias_marmoratus
ENSMODG00000015544	SMARCAL1	71	58.806	ENSLBEG00000022915	smarcal1	89	58.806	Labrus_bergylta
ENSMODG00000015544	SMARCAL1	90	51.919	ENSLBEG00000003493	smarcal1	100	52.032	Labrus_bergylta
ENSMODG00000015544	SMARCAL1	99	51.057	ENSLACG00000010974	SMARCAL1	99	51.057	Latimeria_chalumnae
ENSMODG00000015544	SMARCAL1	92	54.051	ENSLOCG00000009637	smarcal1	99	54.213	Lepisosteus_oculatus
ENSMODG00000015544	SMARCAL1	96	52.295	ENSMAMG00000000828	SMARCAL1	98	52.295	Mastacembelus_armatus
ENSMODG00000015544	SMARCAL1	71	61.829	ENSMZEG00005007660	SMARCAL1	97	51.323	Maylandia_zebra
ENSMODG00000015544	SMARCAL1	99	56.173	ENSMGAG00000011658	SMARCAL1	99	56.173	Meleagris_gallopavo
ENSMODG00000015544	SMARCAL1	75	55.830	ENSMMOG00000003842	smarcal1	90	55.830	Mola_mola
ENSMODG00000015544	SMARCAL1	68	62.290	ENSNBRG00000016273	smarcal1	84	62.290	Neolamprologus_brichardi
ENSMODG00000015544	SMARCAL1	92	74.029	ENSMEUG00000004395	SMARCAL1	100	74.029	Notamacropus_eugenii
ENSMODG00000015544	SMARCAL1	71	62.391	ENSONIG00000009036	smarcal1	99	62.391	Oreochromis_niloticus
ENSMODG00000015544	SMARCAL1	97	50.849	ENSORLG00000016455	SMARCAL1	97	50.849	Oryzias_latipes
ENSMODG00000015544	SMARCAL1	97	50.849	ENSORLG00020001610	SMARCAL1	97	50.849	Oryzias_latipes_hni
ENSMODG00000015544	SMARCAL1	97	50.738	ENSORLG00015001865	SMARCAL1	97	50.738	Oryzias_latipes_hsok
ENSMODG00000015544	SMARCAL1	75	57.866	ENSOMEG00000001845	smarcal1	84	57.866	Oryzias_melastigma
ENSMODG00000015544	SMARCAL1	79	56.437	ENSPMGG00000019092	SMARCAL1	89	54.963	Periophthalmus_magnuspinnatus
ENSMODG00000015544	SMARCAL1	100	78.834	ENSPCIG00000022514	SMARCAL1	100	78.834	Phascolarctos_cinereus
ENSMODG00000015544	SMARCAL1	77	61.884	ENSPFOG00000000560	SMARCAL1	96	52.417	Poecilia_formosa
ENSMODG00000015544	SMARCAL1	77	61.884	ENSPMEG00000018146	SMARCAL1	96	52.417	Poecilia_mexicana
ENSMODG00000015544	SMARCAL1	54	64.240	ENSPREG00000009591	SMARCAL1	88	68.213	Poecilia_reticulata
ENSMODG00000015544	SMARCAL1	75	62.345	ENSPNAG00000014900	smarcal1	95	62.345	Pygocentrus_nattereri
ENSMODG00000015544	SMARCAL1	99	69.836	ENSSHAG00000013538	SMARCAL1	100	69.836	Sarcophilus_harrisii
ENSMODG00000015544	SMARCAL1	99	49.340	ENSSMAG00000010427	SMARCAL1	100	49.340	Scophthalmus_maximus
ENSMODG00000015544	SMARCAL1	71	61.773	ENSSDUG00000017470	SMARCAL1	73	61.773	Seriola_dumerili
ENSMODG00000015544	SMARCAL1	75	59.178	ENSSLDG00000007224	SMARCAL1	100	49.747	Seriola_lalandi_dorsalis
ENSMODG00000015544	SMARCAL1	84	67.211	ENSSPUG00000015369	SMARCAL1	79	67.211	Sphenodon_punctatus
ENSMODG00000015544	SMARCAL1	67	63.142	ENSSPAG00000003742	smarcal1	82	63.256	Stegastes_partitus
ENSMODG00000015544	SMARCAL1	95	57.866	ENSSSCG00000035501	SMARCAL1	99	57.866	Sus_scrofa
ENSMODG00000015544	SMARCAL1	71	67.737	ENSTGUG00000005079	SMARCAL1	99	67.737	Taeniopygia_guttata
ENSMODG00000015544	SMARCAL1	96	57.061	ENSTRUG00000010701	SMARCAL1	97	57.061	Takifugu_rubripes
ENSMODG00000015544	SMARCAL1	99	54.323	ENSTTRG00000009001	SMARCAL1	99	54.323	Tursiops_truncatus
ENSMODG00000015544	SMARCAL1	97	56.992	ENSXETG00000000465	smarcal1	98	56.992	Xenopus_tropicalis